Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47214 * 240.00625 * 3 2 1 5 5 H 1.48502 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47143 * 120.00466 * 3 2 1 7 7 C 1.37877 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00060 * 191.26958 * 7 2 1 9 9 C 1.50703 * 119.99864 * 11.53748 * 7 2 1 10 10 C 1.53002 * 115.54816 * 39.19072 * 9 7 2 11 11 N 1.46896 * 109.47113 * 54.13755 * 10 9 7 12 12 C 1.46524 * 111.00171 * 64.86971 * 11 10 9 13 13 C 1.53208 * 110.04082 * 197.44342 * 12 11 10 14 14 S 1.81937 * 108.61442 * 298.34273 * 13 12 11 15 15 C 1.81880 * 101.79998 * 51.21375 * 14 13 12 16 16 H 1.08995 * 109.74705 * 67.99850 * 15 14 13 17 17 C 1.52993 * 109.48449 * 189.52654 * 15 14 13 18 18 O 1.42951 * 109.27949 * 176.22600 * 17 15 14 19 19 C 1.42867 * 114.24197 * 298.94322 * 18 17 15 20 20 C 1.53143 * 109.55541 * 60.80009 * 19 18 17 21 21 C 1.46442 * 110.99965 * 190.57138 * 11 10 9 22 22 H 1.09008 * 109.43969 * 281.95755 * 21 11 10 23 23 C 1.52996 * 117.50056 * 253.48146 * 9 7 2 24 24 C 1.52998 * 117.49856 * 184.85684 * 9 7 2 25 25 H 0.96995 * 119.99780 * 5.59590 * 1 2 3 26 26 H 1.09001 * 109.46964 * 174.13480 * 10 9 7 27 27 H 1.09000 * 109.46657 * 294.13682 * 10 9 7 28 28 H 1.08998 * 109.37767 * 317.62047 * 12 11 10 29 29 H 1.09008 * 109.37724 * 77.38871 * 12 11 10 30 30 H 1.09000 * 109.61572 * 58.07926 * 13 12 11 31 31 H 1.08998 * 109.61755 * 178.42955 * 13 12 11 32 32 H 1.09001 * 109.50187 * 296.17111 * 17 15 14 33 33 H 1.08997 * 109.50284 * 56.27968 * 17 15 14 34 34 H 1.08995 * 109.45748 * 300.77358 * 19 18 17 35 35 H 1.08996 * 109.44596 * 180.81576 * 19 18 17 36 36 H 1.09000 * 109.53915 * 182.67693 * 20 19 18 37 37 H 1.08995 * 109.53644 * 62.42466 * 20 19 18 38 38 H 1.09009 * 117.49891 * 359.97438 * 23 9 7 39 39 H 1.09002 * 117.49947 * 145.02373 * 23 9 7 40 40 H 1.08999 * 117.49944 * 214.97960 * 24 9 7 41 41 H 1.09009 * 117.49796 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0689 -1.2031 0.1822 9 6 1.2739 -2.4859 -0.2622 10 6 0.1879 -2.4235 -1.3381 11 7 0.7597 -1.8877 -2.5806 12 6 1.7731 -2.7946 -3.1261 13 6 2.6489 -2.0534 -4.1414 14 16 1.5955 -1.4853 -5.5117 15 6 0.2595 -0.6288 -4.6233 16 1 0.6501 0.2723 -4.1506 17 6 -0.8622 -0.2785 -5.6031 18 8 -1.9470 0.3151 -4.8860 19 6 -2.5298 -0.5338 -3.8956 20 6 -1.4727 -0.9032 -2.8508 21 6 -0.2918 -1.5789 -3.5518 22 1 -0.6314 -2.5007 -4.0243 23 6 1.0368 -3.4170 0.9284 24 6 2.0707 -3.7860 -0.1373 25 1 -0.4849 0.8360 -0.0819 26 1 -0.2015 -3.4252 -1.5198 27 1 -0.6207 -1.7749 -1.0009 28 1 2.3976 -3.1690 -2.3150 29 1 1.2805 -3.6325 -3.6196 30 1 3.1193 -1.1952 -3.6614 31 1 3.4173 -2.7263 -4.5220 32 1 -0.4890 0.4256 -6.3468 33 1 -1.2072 -1.1850 -6.1004 34 1 -2.9042 -1.4410 -4.3697 35 1 -3.3538 -0.0117 -3.4094 36 1 -1.9047 -1.5888 -2.1218 37 1 -1.1289 -0.0008 -2.3454 38 1 1.4097 -3.0955 1.9010 39 1 0.1068 -3.9854 0.9455 40 1 1.8210 -4.5970 -0.8213 41 1 3.1234 -3.7070 0.1345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602784384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -4.442604 kcal Electronic energy + Delta-G solvation = -22226.823758 eV Core-core repulsion = 19233.998111 eV Total energy + Delta-G solvation = -2992.825646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.49823 -37.62087 -35.50715 -32.28954 -31.95278 -31.10055 -29.61969 -25.79935 -25.09903 -24.02847 -23.11280 -21.39129 -20.80706 -19.73899 -18.93545 -16.72143 -16.32522 -15.75456 -15.60230 -14.92044 -14.67679 -14.59969 -14.42095 -13.76993 -13.62064 -13.12491 -13.04329 -12.62587 -12.36140 -11.91915 -11.69336 -11.51916 -11.23852 -11.13732 -11.05092 -10.86120 -10.71568 -10.53190 -10.47969 -9.98041 -9.97235 -9.48619 -9.41758 -9.21595 -9.01572 -8.59426 -7.98963 -7.51319 -7.30091 -5.99611 -3.97565 2.04298 2.80832 3.33912 3.39579 3.44019 4.08195 4.37630 4.46448 4.91067 5.04103 5.07595 5.25035 5.36191 5.40769 5.49417 5.55870 5.57572 5.67910 5.73112 5.78282 5.84176 6.05032 6.08781 6.12994 6.21449 6.31644 6.37933 6.43663 6.49569 6.60519 6.66594 6.88296 6.90424 7.08931 7.28712 7.30676 7.49300 7.94217 7.99337 8.03905 8.47499 8.94978 9.62872 11.06106 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.008264 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.988425 B = 3387.502009 C = 3762.331003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.091 3.909 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.471 4.471 8 H 0.053 0.947 9 C 0.067 3.933 10 C 0.097 3.903 11 N -0.508 5.508 12 C 0.056 3.944 13 C -0.062 4.062 14 S -0.293 6.293 15 C -0.068 4.068 16 H 0.105 0.895 17 C 0.086 3.914 18 O -0.377 6.377 19 C 0.060 3.940 20 C -0.146 4.146 21 C 0.098 3.902 22 H 0.036 0.964 23 C -0.201 4.201 24 C -0.221 4.221 25 H 0.258 0.742 26 H -0.012 1.012 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -3.358 -8.285 9.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.111 4.111 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.508 4.508 8 H 0.071 0.929 9 C 0.067 3.933 10 C -0.029 4.029 11 N -0.231 5.231 12 C -0.074 4.074 13 C -0.211 4.211 14 S -0.066 6.066 15 C -0.197 4.197 16 H 0.123 0.877 17 C 0.008 3.992 18 O -0.296 6.296 19 C -0.017 4.017 20 C -0.185 4.185 21 C -0.013 4.013 22 H 0.053 0.947 23 C -0.240 4.240 24 C -0.259 4.259 25 H 0.068 0.932 26 H 0.006 0.994 27 H 0.144 0.856 28 H 0.119 0.881 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.297 -2.747 -9.266 9.934 hybrid contribution 0.289 -0.114 1.152 1.193 sum -2.008 -2.860 -8.114 8.835 Atomic orbital electron populations 1.69842 1.05851 1.26559 1.48940 1.24642 0.94524 0.98189 0.93785 0.86853 0.79946 0.83860 0.78392 1.20318 1.21446 1.20750 1.20202 0.93348 0.89366 1.47918 0.92928 1.18927 0.93943 0.88530 0.91941 1.21867 0.99136 0.94762 0.87113 1.60943 1.12552 1.45774 1.03811 1.22257 0.95091 0.92692 0.97321 1.23503 0.98472 1.03646 0.95475 1.86372 1.29368 1.72735 1.18129 1.23980 0.95885 1.01645 0.98213 0.87673 1.22293 0.85592 0.98762 0.92586 1.87929 1.47936 1.41769 1.51956 1.22721 0.95795 0.94126 0.89100 1.22404 0.94533 1.03768 0.97807 1.21630 0.92000 0.95514 0.92149 0.94651 1.22945 0.97997 1.07376 0.95684 1.22981 0.96611 1.02071 1.04217 0.93175 0.99440 0.85595 0.88076 0.95620 0.88699 0.88447 0.88439 0.92631 0.93777 0.88665 0.90014 0.88125 0.90361 0.92020 0.91859 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.25 10.38 55.43 0.58 -21.67 16 2 C 0.09 2.34 5.23 -17.82 -0.09 2.24 16 3 Si 0.88 20.72 29.56 -169.99 -5.02 15.69 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.47 -12.05 8.68 -34.44 -0.30 -12.35 16 8 H 0.05 1.38 7.84 -52.49 -0.41 0.97 16 9 C 0.07 1.54 1.35 -155.66 -0.21 1.33 16 10 C 0.10 2.09 3.62 -3.83 -0.01 2.07 16 11 N -0.51 -10.06 4.01 -226.87 -0.91 -10.97 16 12 C 0.06 1.01 5.26 -3.92 -0.02 0.99 16 13 C -0.06 -1.03 6.68 37.27 0.25 -0.78 16 14 S -0.29 -4.76 21.76 -107.50 -2.34 -7.10 16 15 C -0.07 -1.14 2.83 -26.50 -0.07 -1.22 16 16 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 17 C 0.09 1.27 6.14 37.15 0.23 1.50 16 18 O -0.38 -5.97 10.76 -35.23 -0.38 -6.35 16 19 C 0.06 0.86 6.84 37.23 0.25 1.12 16 20 C -0.15 -2.52 4.43 -26.63 -0.12 -2.63 16 21 C 0.10 1.73 1.80 -67.70 -0.12 1.61 16 22 H 0.04 0.63 7.89 -51.92 -0.41 0.22 16 23 C -0.20 -4.39 9.96 -26.73 -0.27 -4.65 16 24 C -0.22 -4.54 8.05 -26.73 -0.22 -4.75 16 25 H 0.26 6.45 8.32 -40.82 -0.34 6.11 16 26 H -0.01 -0.26 8.08 -51.93 -0.42 -0.68 16 27 H 0.13 2.89 3.60 -51.93 -0.19 2.71 16 28 H 0.10 1.92 5.05 -51.93 -0.26 1.66 16 29 H 0.03 0.45 7.90 -51.92 -0.41 0.04 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.43 6.39 -51.93 -0.33 1.10 16 37 H 0.10 2.04 7.51 -51.93 -0.39 1.65 16 38 H 0.08 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16 41 H 0.07 1.52 8.14 -51.92 -0.42 1.09 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -25.59 320.60 -10.54 -36.13 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.60 Total: 4.97 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.70 Total: -15.54 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.33 Total: -32.64 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.38 Total: -6.35 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -4.76 SS G_CDS: -2.34 Total: -7.10 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -25.59 -10.54 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602784384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.688 kcal (2) G-P(sol) polarization free energy of solvation -25.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds