Wall clock time and date at job start Tue Mar 31 2020 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00035 * 2 1 4 4 H 1.48505 * 109.47068 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47309 * 300.00055 * 3 2 1 6 6 H 1.48496 * 109.46981 * 60.00725 * 3 2 1 7 7 C 1.37874 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99921 * 191.75170 * 7 2 1 9 9 C 1.50703 * 120.00190 * 11.47470 * 7 2 1 10 10 C 1.52993 * 115.55164 * 40.12995 * 9 7 2 11 11 N 1.46901 * 109.47271 * 188.44031 * 10 9 7 12 12 C 1.46526 * 111.00292 * 77.76970 * 11 10 9 13 13 C 1.53211 * 110.03842 * 162.55491 * 12 11 10 14 14 S 1.81936 * 108.61398 * 61.65913 * 13 12 11 15 15 C 1.81876 * 101.79932 * 308.78593 * 14 13 12 16 16 H 1.08999 * 109.74717 * 291.99415 * 15 14 13 17 17 C 1.52991 * 109.48580 * 170.47702 * 15 14 13 18 18 O 1.42952 * 109.28159 * 183.77299 * 17 15 14 19 19 C 1.42870 * 114.24484 * 61.05259 * 18 17 15 20 20 C 1.53131 * 109.55278 * 299.20294 * 19 18 17 21 21 C 1.46437 * 110.99604 * 312.06936 * 11 10 9 22 22 H 1.09004 * 109.44598 * 78.04863 * 21 11 10 23 23 C 1.53003 * 117.49694 * 254.42338 * 9 7 2 24 24 C 1.53001 * 59.99997 * 252.50887 * 23 9 7 25 25 H 0.96998 * 119.99564 * 4.98878 * 1 2 3 26 26 H 1.09004 * 109.47077 * 308.43661 * 10 9 7 27 27 H 1.08999 * 109.47089 * 68.43538 * 10 9 7 28 28 H 1.09005 * 109.37243 * 282.72908 * 12 11 10 29 29 H 1.09001 * 109.37498 * 42.38051 * 12 11 10 30 30 H 1.09004 * 109.61007 * 181.39669 * 13 12 11 31 31 H 1.08997 * 109.61327 * 301.74520 * 13 12 11 32 32 H 1.09010 * 109.50321 * 303.71341 * 17 15 14 33 33 H 1.09000 * 109.50397 * 63.82223 * 17 15 14 34 34 H 1.08994 * 109.45718 * 179.17574 * 19 18 17 35 35 H 1.09003 * 109.43882 * 59.21728 * 19 18 17 36 36 H 1.09000 * 109.54514 * 297.57219 * 20 19 18 37 37 H 1.09004 * 109.60933 * 177.36322 * 20 19 18 38 38 H 1.09002 * 117.50111 * 359.97438 * 23 9 7 39 39 H 1.09000 * 117.49778 * 145.02254 * 23 9 7 40 40 H 1.09002 * 117.49981 * 252.51017 * 24 23 9 41 41 H 1.09006 * 117.51740 * 107.48117 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0675 -1.2040 0.1900 9 6 1.2735 -2.4860 -0.2607 10 6 0.2019 -2.4298 -1.3512 11 7 -0.5580 -3.6870 -1.3563 12 6 -1.5325 -3.7160 -0.2625 13 6 -2.5873 -4.7952 -0.5276 14 16 -1.7582 -6.4133 -0.5954 15 6 -0.4206 -6.0961 -1.7862 16 1 -0.8418 -5.9322 -2.7781 17 6 0.5419 -7.2853 -1.8012 18 8 1.6376 -6.9947 -2.6721 19 6 2.4104 -5.8577 -2.2835 20 6 1.5211 -4.6111 -2.2783 21 6 0.3403 -4.8432 -1.3324 22 1 0.7130 -4.9923 -0.3190 23 6 1.0181 -3.4063 0.9346 24 6 2.0648 -3.7873 -0.1143 25 1 -0.4849 0.8369 -0.0731 26 1 -0.4739 -1.5976 -1.1540 27 1 0.6780 -2.2890 -2.3216 28 1 -1.0188 -3.9346 0.6737 29 1 -2.0205 -2.7442 -0.1870 30 1 -3.3222 -4.7941 0.2775 31 1 -3.0842 -4.5957 -1.4769 32 1 0.9158 -7.4635 -0.7929 33 1 0.0187 -8.1725 -2.1579 34 1 3.2291 -5.7167 -2.9891 35 1 2.8157 -6.0187 -1.2845 36 1 1.1497 -4.4239 -3.2858 37 1 2.0980 -3.7515 -1.9369 38 1 1.3791 -3.0775 1.9091 39 1 0.0863 -3.9718 0.9443 40 1 1.8216 -4.6035 -0.7946 41 1 3.1142 -3.7090 0.1699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602784385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:34 Heat of formation + Delta-G solvation = 98.568527 kcal Electronic energy + Delta-G solvation = -22533.458650 eV Core-core repulsion = 19545.099901 eV Total energy + Delta-G solvation = -2988.358749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.02974 -39.25447 -36.25737 -34.76593 -33.64830 -32.32434 -31.41712 -28.20409 -26.69494 -25.67839 -24.80880 -22.97156 -22.13566 -21.50714 -20.76830 -18.49781 -18.02971 -17.36759 -16.96038 -16.83377 -16.57558 -16.14567 -15.90218 -15.32694 -14.91503 -14.67027 -14.50665 -13.88357 -13.71337 -13.53097 -13.18208 -13.05322 -12.88583 -12.72212 -12.62994 -12.46746 -12.25359 -12.10077 -11.87593 -11.64967 -11.38660 -11.09909 -10.82985 -10.61747 -10.55908 -10.21951 -9.89424 -8.98553 -8.63754 -8.13498 -6.24790 0.72640 1.36419 1.41262 1.47848 1.50669 2.38102 2.83532 2.91798 2.98934 3.51402 3.61616 3.69555 3.82172 3.95707 3.97734 4.12134 4.17601 4.28717 4.36211 4.41155 4.50024 4.56698 4.64717 4.67219 4.69449 4.78706 4.84774 4.87313 5.04278 5.11638 5.15591 5.23235 5.31723 5.44797 5.54661 5.58158 5.89912 6.09947 6.13678 6.34451 6.42196 6.79231 7.38405 8.85511 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.006623 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.849408 B = 4226.397673 C = 4989.540106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.031 3.969 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.044 0.956 9 C 0.013 3.987 10 C 0.095 3.905 11 N -0.539 5.539 12 C 0.036 3.964 13 C -0.063 4.063 14 S -0.272 6.272 15 C -0.073 4.073 16 H 0.093 0.907 17 C 0.083 3.917 18 O -0.380 6.380 19 C 0.058 3.942 20 C -0.174 4.174 21 C 0.051 3.949 22 H 0.094 0.906 23 C -0.246 4.246 24 C -0.281 4.281 25 H 0.264 0.736 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.192 0.808 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -11.472 -3.769 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.169 4.169 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.011 3.989 10 C -0.032 4.032 11 N -0.262 5.262 12 C -0.092 4.092 13 C -0.212 4.212 14 S -0.044 6.044 15 C -0.202 4.202 16 H 0.111 0.889 17 C 0.005 3.995 18 O -0.299 6.299 19 C -0.019 4.019 20 C -0.212 4.212 21 C -0.058 4.058 22 H 0.111 0.889 23 C -0.282 4.282 24 C -0.315 4.315 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.141 0.859 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.131 0.869 40 H 0.208 0.792 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.563 -12.422 -3.738 13.223 hybrid contribution 1.066 2.810 0.723 3.092 sum -1.497 -9.612 -3.015 10.184 Atomic orbital electron populations 1.69920 1.06682 1.27498 1.49173 1.25553 0.95602 1.01681 0.94105 0.85658 0.79009 0.80126 0.77746 1.19854 1.19906 1.21058 1.20873 0.93749 0.91676 1.48904 0.93808 1.19761 0.96302 0.88632 0.94202 1.21701 0.95364 0.90688 0.95460 1.61646 1.17382 1.02557 1.44656 1.22739 0.93433 0.99155 0.93889 1.23537 0.99182 0.91872 1.06601 1.86494 1.37646 1.20711 1.59591 1.24079 0.96831 0.99051 1.00278 0.88858 1.22446 0.86271 0.95344 0.95418 1.87935 1.42242 1.47473 1.52212 1.22870 0.93504 0.83491 1.02035 1.22944 0.97102 1.01324 0.99859 1.23069 0.92322 0.90112 1.00284 0.88916 1.24051 1.01070 1.08431 0.94694 1.26279 0.95570 1.04641 1.05023 0.92676 0.88043 0.93358 0.91675 0.90666 0.85891 0.88987 0.91697 0.86303 0.86076 0.91968 0.91056 0.87670 0.93500 0.86894 0.79201 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.78 10.86 21.45 0.23 -47.54 16 2 C 0.03 1.65 5.24 84.65 0.44 2.09 16 3 Si 0.95 42.04 29.56 68.60 2.03 44.07 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.51 -27.56 9.01 25.60 0.23 -27.33 16 8 H 0.04 2.40 7.84 -2.91 -0.02 2.38 16 9 C 0.01 0.60 1.91 -52.93 -0.10 0.50 16 10 C 0.09 4.21 4.76 86.30 0.41 4.62 16 11 N -0.54 -19.80 4.52 ******* -4.56 -24.36 16 12 C 0.04 1.26 4.89 86.45 0.42 1.69 16 13 C -0.06 -1.75 6.68 72.05 0.48 -1.27 16 14 S -0.27 -7.46 21.76 -56.49 -1.23 -8.69 16 15 C -0.07 -2.04 2.83 30.74 0.09 -1.95 16 16 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 17 C 0.08 2.02 6.14 71.98 0.44 2.46 16 18 O -0.38 -9.86 10.76 -148.98 -1.60 -11.46 16 19 C 0.06 1.46 6.59 72.03 0.47 1.93 16 20 C -0.17 -5.38 3.49 30.66 0.11 -5.27 16 21 C 0.05 1.66 0.84 45.18 0.04 1.70 16 22 H 0.09 3.28 3.52 -2.39 -0.01 3.27 16 23 C -0.25 -10.93 8.59 30.60 0.26 -10.66 16 24 C -0.28 -11.33 6.57 30.60 0.20 -11.12 16 25 H 0.26 13.40 8.32 -92.71 -0.77 12.63 16 26 H 0.10 5.09 5.03 -2.38 -0.01 5.08 16 27 H 0.05 2.17 7.16 -2.39 -0.02 2.15 16 28 H 0.07 2.47 4.18 -2.38 -0.01 2.46 16 29 H 0.07 2.87 7.66 -2.39 -0.02 2.85 16 30 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 1.53 7.23 -2.39 -0.02 1.51 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 37 H 0.11 3.78 4.07 -2.39 -0.01 3.77 16 38 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.11 4.68 2.73 -2.39 -0.01 4.67 16 40 H 0.19 6.50 0.38 -111.14 -0.04 6.46 16 41 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -55.69 297.71 -0.62 -56.31 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 1.01 Total: 34.29 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 3.50 Total: -42.62 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -4.32 Total: -71.90 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -1.60 Total: -11.46 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -1.23 Total: -8.69 kcal Total: -55.69 -0.62 -56.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602784385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.879 kcal (2) G-P(sol) polarization free energy of solvation -55.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds