Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76195 * 103.00196 * 2 1 4 4 C 1.35437 * 125.87256 * 179.97438 * 3 2 1 5 5 C 1.41387 * 106.77792 * 180.02562 * 4 3 2 6 6 C 1.34463 * 106.93877 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.71124 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47041 * 89.99978 * 7 6 5 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.46733 * 299.99953 * 10 9 8 12 12 C 1.53005 * 109.47212 * 59.99438 * 10 9 8 13 13 C 1.52996 * 109.47473 * 179.97438 * 10 9 8 14 14 C 1.50699 * 109.47239 * 179.97438 * 13 10 9 15 15 H 1.08003 * 119.99960 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99798 * 179.97438 * 14 13 10 17 17 N 1.31508 * 120.00253 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99629 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47482 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47028 * 120.00411 * 18 16 14 21 21 H 1.48497 * 109.47236 * 240.00150 * 18 16 14 22 22 O 1.34417 * 125.86933 * 0.34906 * 3 2 1 23 23 H 1.09006 * 109.47230 * 60.00503 * 1 2 3 24 24 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47314 * 300.00386 * 1 2 3 26 26 H 1.08002 * 126.61265 * 0.02562 * 4 3 2 27 27 H 1.08002 * 126.53056 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.46924 * 329.99889 * 7 6 5 29 29 H 1.08995 * 109.46962 * 210.00043 * 7 6 5 30 30 H 1.00901 * 111.00121 * 56.04537 * 8 7 6 31 31 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 32 32 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 33 33 H 1.09002 * 109.47288 * 60.00045 * 11 10 9 34 34 H 1.09001 * 109.46630 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47188 * 299.99959 * 11 10 9 36 36 H 1.08996 * 109.46524 * 60.00440 * 12 10 9 37 37 H 1.09001 * 109.46962 * 180.02562 * 12 10 9 38 38 H 1.08992 * 109.47457 * 300.00343 * 12 10 9 39 39 H 1.08996 * 109.47261 * 300.00171 * 13 10 9 40 40 H 1.09000 * 109.46870 * 59.99782 * 13 10 9 41 41 H 0.97001 * 120.00663 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4583 2.2432 0.0005 5 6 3.3082 3.6490 0.0009 6 6 1.9876 3.9021 0.0012 7 6 1.3539 5.2694 0.0011 8 7 1.1477 5.7134 -1.3839 9 6 0.5296 7.0456 -1.4231 10 6 0.3304 7.4727 -2.8786 11 6 1.6860 7.5184 -3.5867 12 6 -0.5804 6.4668 -3.5854 13 6 -0.3138 8.8598 -2.9195 14 6 -0.5094 9.2808 -4.3533 15 1 -0.2050 8.6244 -5.1551 16 6 -1.0779 10.5035 -4.6413 17 7 -1.4490 11.3025 -3.6649 18 14 -1.3210 11.0250 -6.4185 19 1 -0.8246 9.9551 -7.3207 20 1 -2.7656 11.2561 -6.6734 21 1 -0.5666 12.2782 -6.6742 22 8 1.3263 2.7293 0.0066 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 4.3887 1.6947 0.0006 27 1 4.1029 4.3804 0.0009 28 1 2.0087 5.9733 0.5147 29 1 0.3938 5.2249 0.5152 30 1 0.5965 5.0441 -1.8999 31 1 -0.4363 7.0129 -0.9190 32 1 1.1783 7.7621 -0.9193 33 1 2.1446 6.5299 -3.5576 34 1 1.5441 7.8223 -4.6239 35 1 2.3350 8.2349 -3.0833 36 1 -1.5461 6.4343 -3.0809 37 1 -0.7219 6.7709 -4.6225 38 1 -0.1219 5.4784 -3.5563 39 1 -1.2795 8.8269 -2.4152 40 1 0.3348 9.5766 -2.4160 41 1 -1.8486 12.1628 -3.8675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603426329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -0.609532 kcal Electronic energy + Delta-G solvation = -19801.595109 eV Core-core repulsion = 16808.935677 eV Total energy + Delta-G solvation = -2992.659432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.58883 -37.74258 -34.71922 -33.11998 -32.26697 -30.12328 -29.31610 -27.06452 -26.35644 -26.06827 -24.22223 -22.19932 -22.01055 -20.74002 -18.50763 -17.87953 -16.40928 -16.27828 -15.88686 -15.48340 -14.80678 -14.70738 -14.16320 -13.90595 -13.88726 -13.64492 -13.12956 -12.96031 -12.67301 -12.53259 -12.39017 -12.11185 -11.99733 -11.63065 -11.10473 -10.99524 -10.89595 -10.76204 -10.51330 -10.29875 -10.25786 -10.13356 -9.71111 -9.56057 -9.04475 -8.84486 -8.32875 -8.23683 -7.56279 -5.97224 -3.97234 0.96012 1.42855 1.60688 2.47011 3.29172 3.32022 3.40016 3.43625 4.44705 4.55059 4.68352 4.72237 4.73977 4.89541 5.24443 5.31816 5.38780 5.39930 5.52651 5.65729 5.71565 5.78301 5.80569 5.95480 6.19328 6.28899 6.36982 6.47437 6.64929 6.75861 6.81984 6.87604 7.12166 7.18642 7.24738 7.32216 7.53992 7.69134 7.83571 8.03043 8.47390 9.08307 9.65735 11.14501 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033700 B = 0.002838 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.672486 B = 9863.913209 C =10130.152235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.033 6.033 3 C -0.037 4.037 4 C -0.175 4.175 5 C -0.178 4.178 6 C 0.001 3.999 7 C 0.138 3.862 8 N -0.681 5.681 9 C 0.069 3.931 10 C -0.058 4.058 11 C -0.117 4.117 12 C -0.130 4.130 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.060 0.940 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 O -0.175 6.175 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.087 0.913 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.342 0.658 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.016 0.984 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -20.387 9.405 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.204 5.796 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.199 4.199 6 C -0.053 4.053 7 C 0.009 3.991 8 N -0.314 5.314 9 C -0.059 4.059 10 C -0.058 4.058 11 C -0.174 4.174 12 C -0.187 4.187 13 C -0.004 4.004 14 C -0.545 4.545 15 H 0.078 0.922 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 O -0.073 6.073 23 H 0.108 0.892 24 H 0.129 0.871 25 H 0.106 0.894 26 H 0.169 0.831 27 H 0.172 0.828 28 H 0.121 0.879 29 H 0.061 0.939 30 H 0.161 0.839 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.937 -21.018 9.374 24.036 hybrid contribution -1.777 1.304 -0.663 2.302 sum 5.159 -19.714 8.711 22.161 Atomic orbital electron populations 1.23607 0.94309 1.07184 1.06742 1.85616 1.06873 0.93498 1.93642 1.24093 0.91016 0.92217 1.12442 1.21548 0.96375 0.94169 1.08108 1.21532 0.95996 0.95344 1.06990 1.22537 0.91464 0.85767 1.05498 1.20385 0.99383 0.86905 0.92407 1.60672 1.55040 1.05210 1.10486 1.22173 0.96239 0.88495 0.99011 1.20636 0.95972 0.98105 0.91119 1.21607 0.95653 0.99604 1.00524 1.21780 0.98170 0.96685 1.02086 1.19129 0.95141 0.88929 0.97193 1.21274 1.39127 1.01674 0.92378 0.92218 1.25016 0.95942 0.96848 0.96813 1.69970 1.42556 1.10148 1.31090 0.86607 0.77673 0.78569 0.85588 1.19761 1.21205 1.21134 1.84182 1.36481 1.13924 1.72742 0.89226 0.87117 0.89400 0.83083 0.82808 0.87889 0.93881 0.83857 0.95534 0.91143 0.93875 0.92633 0.94081 0.94080 0.91599 0.94879 0.96889 0.96594 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.47 101.05 1.06 0.00 16 2 S -0.03 -0.31 22.75 -107.50 -2.45 -2.76 16 3 C -0.04 -0.45 7.35 29.73 0.22 -0.23 16 4 C -0.17 -2.03 10.88 -39.38 -0.43 -2.46 16 5 C -0.18 -2.13 10.80 -39.72 -0.43 -2.56 16 6 C 0.00 0.02 6.83 -35.64 -0.24 -0.23 16 7 C 0.14 1.71 6.21 -4.97 -0.03 1.67 16 8 N -0.68 -9.86 5.70 -115.06 -0.66 -10.52 16 9 C 0.07 1.15 4.65 -3.82 -0.02 1.13 16 10 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 11 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 12 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 13 C 0.03 0.84 4.04 -27.89 -0.11 0.72 16 14 C -0.51 -13.77 7.65 -34.44 -0.26 -14.03 16 15 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 O -0.18 -2.32 10.35 4.46 0.05 -2.27 16 23 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.34 5.00 6.76 -39.29 -0.27 4.74 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 34 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 38 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -29.86 347.67 -8.57 -38.43 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.62 Total: 1.19 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 0.15 Total: -19.85 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.08 Total: -36.51 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: 0.05 Total: -2.27 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.45 Total: -2.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.86 -8.57 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603426329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.820 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds