Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86807 * 119.99799 * 2 1 4 4 H 1.48503 * 109.46841 * 270.00336 * 3 2 1 5 5 H 1.48495 * 109.46819 * 30.00040 * 3 2 1 6 6 H 1.48496 * 109.46884 * 150.00234 * 3 2 1 7 7 C 1.38792 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00027 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00003 * 179.97438 * 7 2 1 10 10 C 1.81003 * 100.00022 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47150 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00022 * 355.01298 * 11 10 9 13 13 N 1.34781 * 119.99931 * 175.02053 * 11 10 9 14 14 C 1.46495 * 120.00222 * 5.53279 * 13 11 10 15 15 C 1.52997 * 117.50059 * 194.45908 * 14 13 11 16 16 C 1.53001 * 117.49801 * 125.79646 * 14 13 11 17 17 C 1.46502 * 119.99613 * 185.53560 * 13 11 10 18 18 C 1.53002 * 109.47381 * 296.08598 * 17 13 11 19 19 C 1.52998 * 109.47380 * 180.02562 * 18 17 13 20 20 C 1.53005 * 109.46434 * 299.99814 * 19 18 17 21 21 C 1.52994 * 109.47299 * 60.00257 * 20 19 18 22 22 C 1.52994 * 109.47349 * 299.99608 * 21 20 19 23 23 H 0.97006 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47275 * 60.00100 * 10 9 7 25 25 H 1.09004 * 109.47388 * 300.00523 * 10 9 7 26 26 H 1.09005 * 115.54695 * 340.12755 * 14 13 11 27 27 H 1.08999 * 117.49914 * 359.97438 * 15 14 13 28 28 H 1.09002 * 117.50162 * 145.02284 * 15 14 13 29 29 H 1.09003 * 117.49693 * 214.98279 * 16 14 13 30 30 H 1.08994 * 117.50270 * 359.97438 * 16 14 13 31 31 H 1.09000 * 109.46591 * 176.08798 * 17 13 11 32 32 H 1.09002 * 109.47021 * 300.00448 * 18 17 13 33 33 H 1.08999 * 109.46906 * 59.99747 * 18 17 13 34 34 H 1.08992 * 109.47267 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47396 * 59.99383 * 19 18 17 36 36 H 1.09000 * 109.47503 * 299.99828 * 20 19 18 37 37 H 1.09000 * 109.46585 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47135 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47458 * 59.99863 * 21 20 19 40 40 H 1.08999 * 109.47505 * 300.00228 * 22 21 20 41 41 H 1.09000 * 109.47746 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0008 12 8 6.3434 -2.3001 -0.0922 13 7 6.0464 -4.4903 0.1007 14 6 5.1198 -5.6249 0.0888 15 6 5.6600 -6.9830 0.5410 16 6 5.3686 -6.7294 -0.9403 17 6 7.4877 -4.7228 0.2230 18 6 8.1911 -4.2454 -1.0491 19 6 9.6962 -4.4888 -0.9216 20 6 10.2378 -3.7146 0.2819 21 6 9.5345 -4.1921 1.5539 22 6 8.0294 -3.9487 1.4265 23 1 -0.4850 0.8401 0.0004 24 1 3.6434 -3.4317 -0.8906 25 1 3.6440 -3.4314 0.8893 26 1 4.0841 -5.3885 0.3331 27 1 6.7051 -7.0324 0.8469 28 1 4.9797 -7.6404 1.0823 29 1 4.4966 -7.2200 -1.3727 30 1 6.2214 -6.6117 -1.6087 31 1 7.6732 -5.7878 0.3629 32 1 7.8055 -4.7971 -1.9064 33 1 8.0055 -3.1805 -1.1890 34 1 10.1974 -4.1483 -1.8276 35 1 9.8815 -5.5538 -0.7818 36 1 10.0526 -2.6496 0.1421 37 1 11.3102 -3.8877 0.3724 38 1 9.9206 -3.6408 2.4113 39 1 9.7198 -5.2571 1.6937 40 1 7.8440 -2.8837 1.2867 41 1 7.5282 -4.2893 2.3325 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603618807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -23.556116 kcal Electronic energy + Delta-G solvation = -20750.323026 eV Core-core repulsion = 17756.668556 eV Total energy + Delta-G solvation = -2993.654471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47754 -37.56087 -37.22944 -33.09892 -32.43045 -30.79948 -30.68031 -28.06896 -25.60000 -23.11194 -22.76290 -22.52894 -22.17855 -20.19773 -18.77599 -17.62904 -16.79457 -16.43300 -15.26878 -15.03930 -14.94643 -14.66809 -14.24822 -14.16425 -13.86255 -13.60714 -13.13632 -12.94304 -12.79292 -12.27310 -12.20105 -11.99209 -11.85999 -11.42856 -11.27006 -11.20206 -11.01174 -10.89481 -10.81688 -10.69916 -10.56304 -10.31016 -10.19786 -9.84386 -9.19448 -8.99568 -8.48816 -8.34802 -6.90507 -6.28346 -3.99696 2.68445 2.87333 3.14356 3.33585 3.50623 3.58219 3.73889 4.33334 4.48862 4.54167 4.66433 4.68150 4.76204 4.83210 4.93589 4.98483 5.10892 5.20931 5.22353 5.28337 5.45176 5.45849 5.48361 5.56561 5.65308 5.69652 5.75595 5.83010 5.90043 5.93341 5.96703 6.03028 6.07648 6.16908 6.23410 6.36279 6.39327 6.77807 7.52616 7.94752 8.42116 8.47455 9.18049 10.80955 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.004732 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.509658 B = 5915.317604 C = 6811.069043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.539 3.461 12 O -0.509 6.509 13 N -0.589 5.589 14 C 0.076 3.924 15 C -0.190 4.190 16 C -0.193 4.193 17 C 0.151 3.849 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.139 4.139 23 H 0.270 0.730 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.136 0.864 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 -14.613 0.774 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.160 1.160 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.273 4.273 11 C 0.327 3.673 12 O -0.383 6.383 13 N -0.321 5.321 14 C -0.030 4.030 15 C -0.228 4.228 16 C -0.232 4.232 17 C 0.048 3.952 18 C -0.175 4.175 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.177 4.177 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.153 0.847 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.713 -13.093 0.730 22.039 hybrid contribution -0.945 -0.522 -0.051 1.081 sum 16.768 -13.615 0.679 21.610 Atomic orbital electron populations 1.69942 1.05919 1.27739 1.48169 1.24703 0.94427 0.98923 0.93186 0.86738 0.81885 0.83318 0.79928 1.19218 1.19972 1.15952 1.22310 0.88285 0.97497 1.58682 0.89445 1.84745 1.09278 1.00237 1.97403 1.23340 0.94359 1.04079 1.05507 1.20172 0.90504 0.81559 0.75034 1.90635 1.58547 1.41783 1.47370 1.47529 1.05844 1.04971 1.73781 1.21813 0.94860 0.82359 1.03953 1.23402 1.02680 0.98840 0.97884 1.23433 1.04118 1.03241 0.92410 1.21060 0.78876 0.99651 0.95583 1.22000 0.94588 1.04239 0.96700 1.21466 0.95460 0.99845 0.98295 1.21556 0.98946 1.00733 0.94657 1.21451 0.94995 1.00726 0.97804 1.21980 0.95184 1.03584 0.96979 0.91961 0.88531 0.88751 0.84665 0.88254 0.87843 0.87945 0.88578 0.89780 0.92388 0.89311 0.91929 0.92452 0.91507 0.92298 0.91853 0.92461 0.89062 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.84 27.74 -169.99 -4.71 17.13 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.40 4.62 36.00 0.17 -2.24 16 11 C 0.54 9.70 7.09 -10.99 -0.08 9.63 16 12 O -0.51 -10.55 12.12 5.55 0.07 -10.48 16 13 N -0.59 -8.16 2.77 -158.59 -0.44 -8.60 16 14 C 0.08 0.86 6.17 -67.93 -0.42 0.44 16 15 C -0.19 -1.65 9.79 -26.69 -0.26 -1.91 16 16 C -0.19 -1.80 10.20 -26.69 -0.27 -2.07 16 17 C 0.15 1.83 2.22 -67.93 -0.15 1.68 16 18 C -0.14 -1.69 5.19 -26.73 -0.14 -1.83 16 19 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16 20 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 21 C -0.11 -1.12 5.92 -26.74 -0.16 -1.28 16 22 C -0.14 -1.76 5.07 -26.73 -0.14 -1.89 16 23 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.10 1.81 8.14 -51.92 -0.42 1.38 16 25 H 0.09 1.74 7.57 -51.91 -0.39 1.34 16 26 H 0.14 1.54 6.59 -51.93 -0.34 1.19 16 27 H 0.10 0.83 6.00 -51.93 -0.31 0.52 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.86 5.33 -51.93 -0.28 0.58 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.38 6.27 -51.93 -0.33 1.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.46 6.08 -51.93 -0.32 1.14 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -31.86 331.65 -9.47 -41.33 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.62 Total: 1.16 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.55 Total: -14.08 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.34 Total: -34.44 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.86 -9.47 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603618807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.776 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds