Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99745 * 2 1 4 4 C 1.53007 * 109.46799 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47194 * 67.13184 * 4 3 2 6 6 C 1.46897 * 111.00146 * 290.18930 * 5 4 3 7 7 C 1.50705 * 109.47222 * 299.76116 * 6 5 4 8 8 H 1.08001 * 119.99551 * 354.87647 * 7 6 5 9 9 C 1.37875 * 120.00455 * 174.87509 * 7 6 5 10 10 N 1.31515 * 119.99513 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00152 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47006 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47278 * 120.00035 * 11 9 7 14 14 H 1.48503 * 109.46892 * 239.99780 * 11 9 7 15 15 C 1.46905 * 111.00109 * 54.13958 * 5 4 3 16 16 C 1.50705 * 109.46852 * 66.04879 * 15 5 4 17 17 C 1.38422 * 122.53579 * 260.02191 * 16 15 5 18 18 C 1.33387 * 114.91799 * 179.97438 * 17 16 15 19 19 C 1.50699 * 125.20518 * 179.97438 * 18 17 16 20 20 S 1.75886 * 109.59697 * 0.02562 * 18 17 16 21 21 C 1.33392 * 122.53980 * 79.73508 * 16 15 5 22 22 C 1.50698 * 125.20301 * 0.02562 * 21 16 15 23 23 H 1.09000 * 109.47238 * 300.00142 * 1 2 3 24 24 H 1.09000 * 109.46978 * 60.00429 * 1 2 3 25 25 H 1.09003 * 109.47048 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47443 * 59.99903 * 3 2 1 27 27 H 1.08999 * 109.47255 * 299.99764 * 3 2 1 28 28 H 1.08997 * 109.47255 * 307.12602 * 4 3 2 29 29 H 1.09004 * 109.46403 * 187.13310 * 4 3 2 30 30 H 1.08998 * 109.47212 * 59.75841 * 6 5 4 31 31 H 1.08998 * 109.47619 * 179.75865 * 6 5 4 32 32 H 0.97000 * 119.99591 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.47444 * 306.04662 * 15 5 4 34 34 H 1.09001 * 109.47117 * 186.04232 * 15 5 4 35 35 H 1.07992 * 122.54201 * 359.95890 * 17 16 15 36 36 H 1.09000 * 109.47185 * 89.99722 * 19 18 17 37 37 H 1.08996 * 109.47338 * 210.00262 * 19 18 17 38 38 H 1.09001 * 109.47023 * 330.00199 * 19 18 17 39 39 H 1.08994 * 109.46971 * 90.00030 * 22 21 16 40 40 H 1.09002 * 109.47165 * 210.00619 * 22 21 16 41 41 H 1.09001 * 109.47015 * 330.00101 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9816 0.6092 -1.2751 6 6 3.5980 -0.8051 -1.3775 7 6 4.2354 -1.5811 -0.2538 8 1 4.9279 -1.0920 0.4153 9 6 3.9345 -2.9154 -0.0799 10 7 3.0909 -3.5107 -0.8944 11 14 4.7240 -3.8770 1.3134 12 1 5.6281 -2.9836 2.0813 13 1 3.6663 -4.4034 2.2130 14 1 5.5056 -5.0085 0.7531 15 6 3.4594 1.3799 -2.4115 16 6 4.0696 2.7578 -2.4069 17 6 3.4017 3.8662 -1.9155 18 6 4.0841 5.0101 -1.9850 19 6 3.5806 6.3519 -1.5189 20 16 5.6612 4.7134 -2.7051 21 6 5.2964 3.0008 -2.8708 22 6 6.2263 1.9667 -3.4512 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8484 0.5378 0.8202 29 1 3.9780 2.1726 0.1283 30 1 2.5137 -0.8932 -1.3106 31 1 3.9367 -1.2052 -2.3332 32 1 2.8789 -4.4493 -0.7719 33 1 2.3758 1.4621 -2.3275 34 1 3.7142 0.8728 -3.3422 35 1 2.4036 3.8091 -1.5070 36 1 3.8510 6.4983 -0.4732 37 1 4.0303 7.1390 -2.1242 38 1 2.4961 6.3888 -1.6223 39 1 6.0621 1.8930 -4.5262 40 1 7.2590 2.2587 -3.2605 41 1 6.0304 1.0003 -2.9866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610391921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = -7.030902 kcal Electronic energy + Delta-G solvation = -21054.203344 eV Core-core repulsion = 18061.265460 eV Total energy + Delta-G solvation = -2992.937883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.02885 -37.39902 -35.38736 -32.99278 -32.26732 -29.41263 -29.01184 -27.61775 -25.90429 -24.79973 -23.96236 -22.53463 -21.35777 -19.54442 -17.85366 -16.89636 -16.18470 -15.93133 -15.72662 -14.77437 -14.57806 -14.27307 -14.17514 -13.74174 -13.50097 -13.10858 -13.02746 -12.86498 -12.52596 -12.13246 -11.84089 -11.69641 -11.46155 -11.38558 -11.14884 -11.02852 -10.98152 -10.82660 -10.65085 -10.52087 -10.43357 -10.01876 -9.72376 -9.00966 -8.91323 -8.26161 -8.20430 -7.99704 -6.98280 -5.84717 -3.81915 1.23963 1.82371 2.20225 2.96443 3.39805 3.47013 3.51611 4.46714 4.57379 4.89130 5.18831 5.24866 5.25848 5.45757 5.48781 5.52553 5.61419 5.64245 5.71991 5.77808 5.84646 5.88077 5.88409 5.91659 5.97333 6.09168 6.18639 6.23960 6.36149 6.43067 6.50044 6.73504 6.85368 6.92925 7.43409 7.81104 7.91564 7.95328 8.21475 8.39069 8.73904 9.24129 9.79099 11.26763 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.005196 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.048754 B = 5386.978876 C = 6202.241426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.023 3.977 4 C 0.066 3.934 5 N -0.523 5.523 6 C 0.181 3.819 7 C -0.490 4.490 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.287 1.287 15 C 0.106 3.894 16 C -0.093 4.093 17 C -0.122 4.122 18 C -0.192 4.192 19 C -0.077 4.077 20 S 0.060 5.940 21 C -0.148 4.148 22 C -0.085 4.085 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.016 0.984 32 H 0.256 0.744 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 16.612 -2.762 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.260 6.260 3 C -0.055 4.055 4 C -0.063 4.063 5 N -0.247 5.247 6 C 0.057 3.943 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.024 4.024 16 C -0.104 4.104 17 C -0.153 4.153 18 C -0.309 4.309 19 C -0.135 4.135 20 S 0.324 5.676 21 C -0.266 4.266 22 C -0.143 4.143 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.874 17.199 -3.169 17.510 hybrid contribution -2.022 -1.236 1.182 2.648 sum -1.148 15.963 -1.987 16.127 Atomic orbital electron populations 1.22671 0.83797 1.02228 0.98217 1.88482 1.17259 1.25744 1.94565 1.23376 0.97703 0.85959 0.98502 1.22141 0.89211 0.99515 0.95399 1.62341 1.58077 1.05096 0.99152 1.20047 0.97267 0.80292 0.96743 1.21076 1.24673 0.94190 1.12943 0.92457 1.24858 0.95379 0.97725 0.96201 1.69971 1.34997 1.11038 1.37778 0.86592 0.79049 0.80016 0.82583 1.19918 1.21385 1.21369 1.20759 0.95959 0.89198 0.96520 1.18851 0.94176 0.96506 1.00880 1.19965 1.01174 0.91298 1.02848 1.24200 0.98047 0.99477 1.09149 1.20258 1.01064 0.91231 1.00987 1.83981 1.16807 1.04508 1.62287 1.24180 0.98907 0.95971 1.07519 1.20388 0.96244 0.97766 0.99929 0.95405 0.95353 0.89991 0.94837 0.94074 0.88869 0.91656 0.94483 0.96575 0.93465 0.94596 0.90769 0.85149 0.91127 0.91753 0.90967 0.91570 0.92044 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.34 -7.27 7.58 -35.23 -0.27 -7.54 16 3 C 0.02 0.42 5.70 37.16 0.21 0.63 16 4 C 0.07 1.30 5.37 -3.83 -0.02 1.28 16 5 N -0.52 -11.04 4.57 -237.52 -1.09 -12.13 16 6 C 0.18 4.64 4.28 -4.98 -0.02 4.62 16 7 C -0.49 -13.72 8.21 -34.44 -0.28 -14.00 16 8 H 0.06 1.61 6.98 -52.49 -0.37 1.25 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C 0.11 1.92 4.13 -4.97 -0.02 1.90 16 16 C -0.09 -1.48 4.45 -106.25 -0.47 -1.96 16 17 C -0.12 -1.74 9.08 -41.21 -0.37 -2.11 16 18 C -0.19 -2.46 6.51 -36.00 -0.23 -2.70 16 19 C -0.08 -0.73 10.38 36.01 0.37 -0.35 16 20 S 0.06 0.79 23.31 -107.50 -2.51 -1.72 16 21 C -0.15 -2.26 6.50 -36.00 -0.23 -2.49 16 22 C -0.08 -1.21 9.85 36.00 0.35 -0.85 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.69 4.87 -51.93 -0.25 0.44 16 28 H 0.09 2.07 6.33 -51.93 -0.33 1.74 16 29 H 0.07 1.18 7.06 -51.93 -0.37 0.81 16 30 H 0.04 1.03 5.29 -51.93 -0.27 0.75 16 31 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.04 0.65 5.66 -51.93 -0.29 0.36 16 34 H 0.07 1.36 7.65 -51.93 -0.40 0.97 16 35 H 0.13 1.72 7.25 -52.49 -0.38 1.34 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.66 7.36 -51.93 -0.38 1.27 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -30.51 338.62 -9.15 -39.66 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.40 Total: -1.47 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 0.29 Total: -12.88 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.35 Total: -38.21 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.27 Total: -7.54 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.51 -9.15 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.626 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds