Wall clock time and date at job start Tue Mar 31 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99745 * 2 1 4 4 C 1.53007 * 109.46799 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47194 * 67.13184 * 4 3 2 6 6 C 1.46897 * 111.00146 * 290.18930 * 5 4 3 7 7 C 1.50705 * 109.47222 * 299.76116 * 6 5 4 8 8 H 1.08001 * 119.99551 * 354.87647 * 7 6 5 9 9 C 1.37875 * 120.00455 * 174.87509 * 7 6 5 10 10 N 1.31515 * 119.99513 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00152 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47006 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47278 * 120.00035 * 11 9 7 14 14 H 1.48503 * 109.46892 * 239.99780 * 11 9 7 15 15 C 1.46905 * 111.00109 * 54.13958 * 5 4 3 16 16 C 1.50705 * 109.46852 * 66.04879 * 15 5 4 17 17 C 1.38422 * 122.53579 * 260.02191 * 16 15 5 18 18 C 1.33387 * 114.91799 * 179.97438 * 17 16 15 19 19 C 1.50699 * 125.20518 * 179.97438 * 18 17 16 20 20 S 1.75886 * 109.59697 * 0.02562 * 18 17 16 21 21 C 1.33392 * 122.53980 * 79.73508 * 16 15 5 22 22 C 1.50698 * 125.20301 * 0.02562 * 21 16 15 23 23 H 1.09000 * 109.47238 * 300.00142 * 1 2 3 24 24 H 1.09000 * 109.46978 * 60.00429 * 1 2 3 25 25 H 1.09003 * 109.47048 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47443 * 59.99903 * 3 2 1 27 27 H 1.08999 * 109.47255 * 299.99764 * 3 2 1 28 28 H 1.08997 * 109.47255 * 307.12602 * 4 3 2 29 29 H 1.09004 * 109.46403 * 187.13310 * 4 3 2 30 30 H 1.08998 * 109.47212 * 59.75841 * 6 5 4 31 31 H 1.08998 * 109.47619 * 179.75865 * 6 5 4 32 32 H 0.97000 * 119.99591 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.47444 * 306.04662 * 15 5 4 34 34 H 1.09001 * 109.47117 * 186.04232 * 15 5 4 35 35 H 1.07992 * 122.54201 * 359.95890 * 17 16 15 36 36 H 1.09000 * 109.47185 * 89.99722 * 19 18 17 37 37 H 1.08996 * 109.47338 * 210.00262 * 19 18 17 38 38 H 1.09001 * 109.47023 * 330.00199 * 19 18 17 39 39 H 1.08994 * 109.46971 * 90.00030 * 22 21 16 40 40 H 1.09002 * 109.47165 * 210.00619 * 22 21 16 41 41 H 1.09001 * 109.47015 * 330.00101 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9816 0.6092 -1.2751 6 6 3.5980 -0.8051 -1.3775 7 6 4.2354 -1.5811 -0.2538 8 1 4.9279 -1.0920 0.4153 9 6 3.9345 -2.9154 -0.0799 10 7 3.0909 -3.5107 -0.8944 11 14 4.7240 -3.8770 1.3134 12 1 5.6281 -2.9836 2.0813 13 1 3.6663 -4.4034 2.2130 14 1 5.5056 -5.0085 0.7531 15 6 3.4594 1.3799 -2.4115 16 6 4.0696 2.7578 -2.4069 17 6 3.4017 3.8662 -1.9155 18 6 4.0841 5.0101 -1.9850 19 6 3.5806 6.3519 -1.5189 20 16 5.6612 4.7134 -2.7051 21 6 5.2964 3.0008 -2.8708 22 6 6.2263 1.9667 -3.4512 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8484 0.5378 0.8202 29 1 3.9780 2.1726 0.1283 30 1 2.5137 -0.8932 -1.3106 31 1 3.9367 -1.2052 -2.3332 32 1 2.8789 -4.4493 -0.7719 33 1 2.3758 1.4621 -2.3275 34 1 3.7142 0.8728 -3.3422 35 1 2.4036 3.8091 -1.5070 36 1 3.8510 6.4983 -0.4732 37 1 4.0303 7.1390 -2.1242 38 1 2.4961 6.3888 -1.6223 39 1 6.0621 1.8930 -4.5262 40 1 7.2590 2.2587 -3.2605 41 1 6.0304 1.0003 -2.9866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:02 Heat of formation + Delta-G solvation = -25.560541 kcal Electronic energy + Delta-G solvation = -21055.006849 eV Core-core repulsion = 18061.265460 eV Total energy + Delta-G solvation = -2993.741389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40418 -38.75717 -36.95727 -34.59260 -33.85957 -30.65986 -30.48400 -29.25121 -27.31678 -26.46704 -25.13725 -24.26837 -22.69019 -21.06629 -19.09364 -18.27638 -18.03475 -17.43794 -17.16700 -16.57871 -16.01058 -15.77349 -15.59553 -15.04716 -14.77242 -14.35658 -14.08726 -14.00568 -13.87661 -13.54901 -13.50797 -13.11282 -12.91586 -12.81813 -12.68694 -12.52976 -12.49653 -12.25910 -12.21135 -12.13001 -11.75828 -11.69019 -11.50345 -11.05378 -10.56095 -10.27820 -9.26106 -9.13402 -8.69903 -8.04360 -6.08577 0.15099 0.76398 1.10896 1.42221 1.42893 1.54988 1.80238 2.49027 3.05689 3.30025 3.57205 3.97742 4.05871 4.15972 4.23683 4.37579 4.44670 4.48692 4.53326 4.58130 4.59530 4.68596 4.72819 4.78242 4.79333 4.84073 4.86213 4.89160 5.13178 5.17978 5.28163 5.34961 5.47548 5.59165 5.73076 5.75152 5.82215 6.23670 6.45624 6.48863 6.81032 7.07245 7.56827 9.06941 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.005196 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.048754 B = 5386.978876 C = 6202.241426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.028 3.972 4 C 0.071 3.929 5 N -0.529 5.529 6 C 0.199 3.801 7 C -0.498 4.498 8 H 0.051 0.949 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.954 3.046 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.114 3.886 16 C -0.104 4.104 17 C -0.141 4.141 18 C -0.182 4.182 19 C -0.078 4.078 20 S 0.093 5.907 21 C -0.171 4.171 22 C -0.081 4.081 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.020 0.980 31 H -0.017 1.017 32 H 0.257 0.743 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.141 0.859 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 19.047 -1.918 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.308 6.308 3 C -0.050 4.050 4 C -0.058 4.058 5 N -0.252 5.252 6 C 0.073 3.927 7 C -0.537 4.537 8 H 0.069 0.931 9 C -0.189 4.189 10 N -0.572 5.572 11 Si 0.780 3.220 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.208 1.208 15 C -0.016 4.016 16 C -0.115 4.115 17 C -0.171 4.171 18 C -0.299 4.299 19 C -0.137 4.137 20 S 0.358 5.642 21 C -0.289 4.289 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.038 0.962 31 H 0.001 0.999 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.932 19.659 -2.322 19.818 hybrid contribution -2.029 -1.883 0.879 2.904 sum -1.097 17.776 -1.443 17.868 Atomic orbital electron populations 1.22778 0.81768 1.02277 1.00210 1.88389 1.19694 1.27728 1.94941 1.23349 0.96136 0.85205 1.00299 1.22059 0.90936 0.99416 0.93366 1.62193 1.58750 1.03258 1.00968 1.19631 0.95783 0.82985 0.94270 1.21322 1.24389 0.94713 1.13227 0.93099 1.25643 0.95937 0.98767 0.98594 1.70095 1.36336 1.11352 1.39458 0.85572 0.78231 0.78565 0.79616 1.19232 1.20945 1.20807 1.20631 0.96000 0.90253 0.94684 1.18718 0.94816 0.95605 1.02410 1.19990 1.01904 0.91126 1.04066 1.24678 0.97422 1.00531 1.07281 1.20407 1.02057 0.89449 1.01751 1.83855 1.16816 1.01948 1.61624 1.24371 0.98942 0.97867 1.07732 1.20322 0.96997 0.96222 1.00445 0.92831 0.93766 0.91044 0.92278 0.92694 0.91893 0.89654 0.96218 0.99899 0.93390 0.94595 0.92112 0.84165 0.89957 0.90361 0.89525 0.90308 0.90687 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.10 16 2 O -0.39 -16.56 7.58 -148.98 -1.13 -17.69 16 3 C 0.03 0.98 5.70 71.98 0.41 1.39 16 4 C 0.07 2.78 5.37 86.31 0.46 3.24 16 5 N -0.53 -22.93 4.57 -905.36 -4.14 -27.07 16 6 C 0.20 10.67 4.28 85.56 0.37 11.04 16 7 C -0.50 -28.72 8.21 25.60 0.21 -28.51 16 8 H 0.05 2.94 6.98 -2.91 -0.02 2.92 16 9 C 0.01 0.46 5.46 84.65 0.46 0.92 16 10 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 11 Si 0.95 45.96 29.54 68.60 2.03 47.99 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 15 C 0.11 4.22 4.13 85.56 0.35 4.58 16 16 C -0.10 -3.24 4.45 -20.92 -0.09 -3.33 16 17 C -0.14 -3.71 9.08 21.22 0.19 -3.52 16 18 C -0.18 -4.12 6.51 24.59 0.16 -3.96 16 19 C -0.08 -1.17 10.38 71.24 0.74 -0.44 16 20 S 0.09 2.22 23.31 -56.49 -1.32 0.91 16 21 C -0.17 -5.07 6.50 24.59 0.16 -4.91 16 22 C -0.08 -2.33 9.85 71.24 0.70 -1.63 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.06 1.76 4.87 -2.39 -0.01 1.75 16 28 H 0.06 2.84 6.33 -2.39 -0.02 2.83 16 29 H 0.09 2.98 7.06 -2.39 -0.02 2.96 16 30 H 0.02 1.16 5.29 -2.39 -0.01 1.15 16 31 H -0.02 -1.00 8.05 -2.39 -0.02 -1.02 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.04 1.32 5.66 -2.39 -0.01 1.30 16 34 H 0.06 2.35 7.65 -2.39 -0.02 2.34 16 35 H 0.14 3.35 7.25 -2.91 -0.02 3.33 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 2.37 7.36 -2.39 -0.02 2.35 16 Total: -1.00 -66.97 338.62 2.11 -64.86 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.01 Total: 10.84 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 5.37 Total: -23.04 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -3.85 Total: -83.87 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.13 Total: -17.69 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.91 kcal Total: -66.97 2.11 -64.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.303 kcal (2) G-P(sol) polarization free energy of solvation -66.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds