Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47334 * 2 1 4 4 C 1.53004 * 109.46997 * 240.00776 * 2 1 3 5 5 H 1.09008 * 109.46776 * 304.99943 * 4 2 1 6 6 F 1.39895 * 109.47222 * 64.99737 * 4 2 1 7 7 C 1.50697 * 109.47341 * 184.99842 * 4 2 1 8 8 O 1.21278 * 119.99819 * 314.25901 * 7 4 2 9 9 N 1.34773 * 120.00105 * 134.25816 * 7 4 2 10 10 C 1.46504 * 119.99983 * 3.73381 * 9 7 4 11 11 C 1.50704 * 109.46732 * 83.74478 * 10 9 7 12 12 H 1.07995 * 120.00199 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99502 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99686 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00311 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47196 * 89.99941 * 15 13 11 17 17 H 1.48504 * 109.47109 * 210.00184 * 15 13 11 18 18 H 1.48507 * 109.47066 * 329.99820 * 15 13 11 19 19 C 1.46500 * 120.00214 * 183.73501 * 9 7 4 20 20 C 1.50699 * 109.47156 * 89.99941 * 19 9 7 21 21 C 1.34514 * 125.78839 * 90.00494 * 20 19 9 22 22 C 1.41385 * 106.83912 * 180.02562 * 21 20 19 23 23 C 1.34506 * 106.84038 * 359.97438 * 22 21 20 24 24 O 1.34301 * 125.79024 * 269.69143 * 20 19 9 25 25 H 1.08999 * 109.47186 * 59.99060 * 1 2 3 26 26 H 1.09001 * 109.46759 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46329 * 299.99287 * 1 2 3 28 28 H 1.08991 * 109.47794 * 120.00845 * 2 1 3 29 29 H 1.09001 * 109.47497 * 300.01072 * 3 2 1 30 30 H 1.09002 * 109.46285 * 60.00549 * 3 2 1 31 31 H 1.08996 * 109.47208 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47116 * 203.73721 * 10 9 7 33 33 H 1.08996 * 109.47462 * 323.74389 * 10 9 7 34 34 H 0.97001 * 119.99870 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47445 * 210.00150 * 19 9 7 36 36 H 1.09002 * 109.47063 * 330.00262 * 19 9 7 37 37 H 1.07999 * 126.57940 * 0.03314 * 21 20 19 38 38 H 1.08005 * 126.57835 * 179.97438 * 22 21 20 39 39 H 1.08005 * 125.78974 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 1 1.6053 -1.7197 -1.2954 6 9 1.6698 0.0015 -2.3886 7 6 3.5419 -0.8293 -1.1891 8 8 4.2071 0.1350 -0.8753 9 7 4.1457 -1.9975 -1.4840 10 6 3.3493 -3.1387 -1.9419 11 6 3.1115 -3.0222 -3.4255 12 1 3.5131 -2.1820 -3.9724 13 6 2.3804 -3.9879 -4.0844 14 7 2.1724 -3.8860 -5.3790 15 14 1.6852 -5.4407 -3.1383 16 1 0.3266 -5.1040 -2.6421 17 1 1.6063 -6.6226 -4.0339 18 1 2.5700 -5.7506 -1.9866 19 6 5.5986 -2.1263 -1.3465 20 6 5.9317 -2.5954 0.0464 21 6 6.0455 -3.8770 0.4386 22 6 6.3658 -3.8570 1.8156 23 6 6.4292 -2.5644 2.1821 24 8 6.1712 -1.8046 1.1051 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.6766 1.9565 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 3.1300 1.4425 0.0005 32 1 3.8857 -4.0640 -1.7315 33 1 2.3924 -3.1467 -1.4201 34 1 1.6578 -4.5651 -5.8425 35 1 5.9695 -2.8502 -2.0721 36 1 6.0677 -1.1589 -1.5260 37 1 5.9169 -4.7531 -0.1796 38 1 6.5284 -4.7150 2.4511 39 1 6.6543 -2.1992 3.1734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784378240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -67.530596 kcal Electronic energy + Delta-G solvation = -23399.377495 eV Core-core repulsion = 19837.602971 eV Total energy + Delta-G solvation = -3561.774523 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.19985 -42.34692 -39.27418 -35.73627 -34.84931 -32.89959 -32.60455 -30.85320 -28.04147 -27.71322 -26.87401 -25.05561 -22.75585 -21.49650 -20.80780 -20.09025 -18.71476 -17.41720 -17.07518 -16.87129 -16.39391 -15.88413 -15.37980 -14.91966 -14.64027 -14.32051 -14.07679 -13.40530 -13.23346 -12.82518 -12.67949 -12.65516 -12.51908 -12.47910 -12.39924 -12.09515 -11.84812 -11.73909 -11.43520 -11.02775 -10.91901 -10.83596 -10.65347 -10.37064 -10.08944 -9.76560 -9.69171 -8.99518 -8.77060 -8.33333 -8.06074 -6.25920 -4.29377 1.85220 2.72669 2.90488 3.12734 3.19672 3.22218 3.27024 3.64478 4.20847 4.77462 4.79799 4.92181 5.02261 5.08006 5.18762 5.21155 5.23084 5.53706 5.59294 5.70295 5.83885 5.87681 5.91430 5.94651 6.08983 6.13483 6.18147 6.20487 6.25357 6.28427 6.51435 6.53276 6.66042 6.77161 7.06903 7.32655 7.34741 7.86472 8.28192 8.59487 8.82052 9.31138 10.86550 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.008518 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.361811 B = 3286.301536 C = 4963.927122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.162 4.162 4 C 0.089 3.911 5 H 0.107 0.893 6 F -0.183 7.183 7 C 0.504 3.496 8 O -0.537 6.537 9 N -0.581 5.581 10 C 0.205 3.795 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.080 3.920 14 N -0.884 5.884 15 Si 0.867 3.133 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.193 3.807 20 C -0.017 4.017 21 C -0.204 4.204 22 C -0.217 4.217 23 C -0.049 4.049 24 O -0.166 6.166 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.268 0.732 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.602 1.290 13.587 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.219 4.219 4 C 0.050 3.950 5 H 0.124 0.876 6 F -0.164 7.164 7 C 0.291 3.709 8 O -0.415 6.415 9 N -0.311 5.311 10 C 0.085 3.915 11 C -0.584 4.584 12 H 0.100 0.900 13 C -0.124 4.124 14 N -0.521 5.521 15 Si 0.693 3.307 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.188 1.188 19 C 0.070 3.930 20 C -0.069 4.069 21 C -0.224 4.224 22 C -0.236 4.236 23 C -0.117 4.117 24 O -0.062 6.062 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.837 2.029 13.510 13.953 hybrid contribution -0.528 -1.323 0.355 1.468 sum 2.309 0.706 13.865 14.074 Atomic orbital electron populations 1.21839 0.94143 1.02126 1.02354 1.21566 0.96681 0.98384 0.96402 1.22097 1.04806 0.93956 1.01011 1.21610 0.92278 0.97254 0.83858 0.87575 1.92848 1.91946 1.79622 1.51982 1.20875 0.90548 0.82752 0.76754 1.90533 1.66181 1.36523 1.48256 1.48050 1.06412 1.13177 1.63483 1.19983 0.90778 0.84380 0.96383 1.21345 1.35534 1.10863 0.90676 0.90002 1.24851 0.95295 0.97546 0.94736 1.69884 1.39163 1.34976 1.08062 0.87001 0.80325 0.82945 0.80462 1.19718 1.20659 1.18771 1.19768 0.82336 1.03932 0.87009 1.23200 1.04085 0.89368 0.90238 1.21677 1.07677 0.97136 0.95870 1.21794 1.08319 0.97327 0.96160 1.23994 1.06082 0.90210 0.91449 1.84109 1.67606 1.37566 1.16873 0.91827 0.92436 0.92255 0.90074 0.92534 0.93429 0.88842 0.94072 0.95377 0.92227 0.86602 0.88588 0.83390 0.83779 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.11 37.16 0.34 -1.63 16 2 C -0.11 -1.75 2.75 -90.62 -0.25 -1.99 16 3 C -0.16 -2.55 8.70 37.16 0.32 -2.23 16 4 C 0.09 1.70 3.04 -27.88 -0.08 1.62 16 5 H 0.11 2.02 5.50 -51.92 -0.29 1.73 16 6 F -0.18 -3.95 16.03 2.25 0.04 -3.91 16 7 C 0.50 10.40 6.94 -10.99 -0.08 10.33 16 8 O -0.54 -11.65 13.37 5.56 0.07 -11.57 16 9 N -0.58 -11.69 2.46 -176.43 -0.43 -12.13 16 10 C 0.21 4.40 3.95 -5.19 -0.02 4.38 16 11 C -0.55 -14.14 9.84 -34.44 -0.34 -14.48 16 12 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.88 -25.43 13.96 55.43 0.77 -24.66 16 15 Si 0.87 19.26 27.47 -169.99 -4.67 14.59 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 19 C 0.19 3.40 5.94 -5.19 -0.03 3.37 16 20 C -0.02 -0.28 6.90 -35.63 -0.25 -0.53 16 21 C -0.20 -3.07 10.81 -39.70 -0.43 -3.50 16 22 C -0.22 -2.83 10.91 -39.70 -0.43 -3.27 16 23 C -0.05 -0.63 12.09 29.41 0.36 -0.28 16 24 O -0.17 -2.76 10.65 5.71 0.06 -2.69 16 25 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.91 7.69 -51.93 -0.40 0.51 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.68 5.26 -51.93 -0.27 1.41 16 32 H 0.04 0.85 7.08 -51.93 -0.37 0.48 16 33 H 0.03 0.59 5.37 -51.93 -0.28 0.31 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.12 1.87 8.07 -51.93 -0.42 1.46 16 36 H 0.10 1.71 7.37 -51.93 -0.38 1.32 16 37 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 38 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.20 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -30.47 328.54 -5.56 -36.04 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.37 Total: 5.56 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.99 Total: -6.18 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.34 Total: -36.79 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.14 Total: -14.27 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.67 Total: 14.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.47 -5.56 -36.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784378240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.496 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds