Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47459 * 2 1 4 4 C 1.53003 * 109.46823 * 120.00117 * 2 1 3 5 5 H 1.08996 * 109.47148 * 305.33359 * 4 2 1 6 6 F 1.39898 * 109.46915 * 185.33324 * 4 2 1 7 7 C 1.50709 * 109.47310 * 65.33627 * 4 2 1 8 8 O 1.21280 * 119.99450 * 43.88100 * 7 4 2 9 9 N 1.34769 * 119.99896 * 223.88648 * 7 4 2 10 10 C 1.46495 * 120.00145 * 179.97438 * 9 7 4 11 11 C 1.50696 * 109.47579 * 89.99622 * 10 9 7 12 12 H 1.08003 * 119.99935 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00627 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99948 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00408 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47324 * 90.00118 * 15 13 11 17 17 H 1.48501 * 109.47315 * 209.99772 * 15 13 11 18 18 H 1.48496 * 109.47172 * 329.99958 * 15 13 11 19 19 C 1.46503 * 120.00261 * 359.97438 * 9 7 4 20 20 C 1.50700 * 109.47089 * 89.99678 * 19 9 7 21 21 C 1.34515 * 125.78466 * 89.72055 * 20 19 9 22 22 C 1.41384 * 106.84135 * 179.89183 * 21 20 19 23 23 C 1.34507 * 106.83849 * 0.36921 * 22 21 20 24 24 O 1.34302 * 108.42430 * 359.77441 * 23 22 21 25 25 H 1.08996 * 109.46830 * 300.00462 * 1 2 3 26 26 H 1.08996 * 109.46870 * 59.99734 * 1 2 3 27 27 H 1.08999 * 109.47321 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47213 * 239.99710 * 2 1 3 29 29 H 1.08996 * 109.46653 * 305.24683 * 3 2 1 30 30 H 1.08997 * 109.47017 * 65.25031 * 3 2 1 31 31 H 1.08998 * 109.47166 * 185.24774 * 3 2 1 32 32 H 1.08999 * 109.47228 * 210.00182 * 10 9 7 33 33 H 1.09001 * 109.47033 * 329.99780 * 10 9 7 34 34 H 0.97001 * 120.00605 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47377 * 210.00231 * 19 9 7 36 36 H 1.09004 * 109.46744 * 330.00197 * 19 9 7 37 37 H 1.08005 * 126.58196 * 0.02562 * 21 20 19 38 38 H 1.08003 * 126.57739 * 180.16704 * 22 21 20 39 39 H 1.08004 * 125.79102 * 179.75393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6007 -0.2656 2.1366 6 9 3.4335 -0.6161 1.3122 7 6 1.6484 -2.1752 1.1850 8 8 1.7775 -2.7926 0.1491 9 7 1.1547 -2.7891 2.2785 10 6 0.7735 -4.2022 2.2159 11 6 1.9587 -5.0589 2.5796 12 1 2.9016 -4.5969 2.8325 13 6 1.8396 -6.4324 2.5895 14 7 0.6914 -6.9950 2.2819 15 14 3.3086 -7.4942 3.0410 16 1 3.3151 -7.7327 4.5068 17 1 3.2176 -8.7939 2.3285 18 1 4.5608 -6.8002 2.6468 19 6 0.9992 -2.0433 3.5298 20 6 -0.3701 -1.4154 3.5736 21 6 -1.4807 -1.9845 4.0758 22 6 -2.5287 -1.0492 3.9153 23 6 -1.9976 0.0322 3.3171 24 8 -0.6899 -0.1952 3.1125 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6021 1.9826 -0.8393 30 1 1.7556 1.9284 0.9332 31 1 3.1260 1.4438 -0.0940 32 1 -0.0397 -4.3906 2.9168 33 1 0.4458 -4.4457 1.2052 34 1 0.6075 -7.9613 2.2885 35 1 1.1146 -2.7225 4.3744 36 1 1.7585 -1.2631 3.5845 37 1 -1.5567 -2.9666 4.5189 38 1 -3.5588 -1.1795 4.2126 39 1 -2.5322 0.9309 3.0468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784378241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = -75.897359 kcal Electronic energy + Delta-G solvation = -23498.641098 eV Core-core repulsion = 19936.503765 eV Total energy + Delta-G solvation = -3562.137333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.57275 -42.40371 -39.10901 -35.64022 -35.09175 -32.88664 -32.70920 -30.24556 -28.56930 -27.05936 -26.52886 -25.41992 -22.95441 -21.56347 -20.65130 -20.43314 -18.83538 -17.58580 -17.01612 -16.44904 -16.29619 -15.75875 -15.60714 -14.95713 -14.63192 -14.37490 -14.13472 -13.63235 -13.30772 -12.77952 -12.74173 -12.69677 -12.58357 -12.48825 -12.18345 -12.09303 -11.86808 -11.62802 -11.31841 -11.04170 -10.99078 -10.89559 -10.66168 -10.34191 -10.22221 -9.78373 -9.71266 -8.98094 -8.48648 -8.37978 -7.92798 -6.09421 -4.14664 1.82603 2.75885 2.93364 3.25558 3.28860 3.35822 3.41559 3.69970 4.40754 4.54990 4.69888 4.81934 4.84886 4.97416 5.10386 5.19409 5.24864 5.27493 5.43714 5.55210 5.67535 5.75499 5.81494 5.87713 5.92890 5.95187 6.09619 6.12558 6.22342 6.32405 6.41227 6.65313 6.87356 7.23027 7.34250 7.39025 7.86191 8.12520 8.16109 8.72444 8.91765 9.50814 10.98819 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.006580 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.385229 B = 4254.351099 C = 5493.339154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.076 3.924 5 H 0.098 0.902 6 F -0.195 7.195 7 C 0.492 3.508 8 O -0.514 6.514 9 N -0.586 5.586 10 C 0.246 3.754 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.185 3.815 20 C -0.031 4.031 21 C -0.189 4.189 22 C -0.212 4.212 23 C -0.048 4.048 24 O -0.176 6.176 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 16.641 2.676 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.202 4.202 4 C 0.037 3.963 5 H 0.115 0.885 6 F -0.175 7.175 7 C 0.276 3.724 8 O -0.389 6.389 9 N -0.317 5.317 10 C 0.128 3.872 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C 0.061 3.939 20 C -0.082 4.082 21 C -0.209 4.209 22 C -0.231 4.231 23 C -0.116 4.116 24 O -0.072 6.072 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.127 16.280 1.953 16.908 hybrid contribution 0.449 -0.822 0.454 1.041 sum -3.678 15.457 2.406 16.070 Atomic orbital electron populations 1.21788 0.93695 1.02670 1.02145 1.21532 0.97226 0.96619 0.97633 1.21794 1.01594 0.94780 1.02001 1.21914 0.77243 0.95506 1.01664 0.88466 1.92832 1.30034 1.96936 1.97738 1.20628 0.79014 0.88268 0.84453 1.90692 1.52409 1.66182 1.29654 1.48373 1.61557 1.13372 1.08421 1.19383 0.95965 0.72742 0.99145 1.21420 0.97304 0.91196 1.47043 0.92207 1.24920 0.96160 0.97803 0.95043 1.69929 1.24144 1.10896 1.48209 0.86481 0.82846 0.79723 0.78325 1.20546 1.21059 1.19783 1.19991 0.88136 0.95533 0.90243 1.23212 0.98882 0.84279 1.01859 1.21709 0.91846 1.01442 1.05873 1.21825 1.00655 0.94770 1.05897 1.23922 0.81743 1.01355 1.04556 1.83994 1.26328 1.32636 1.64260 0.91901 0.92043 0.92257 0.88994 0.92056 0.92496 0.92054 0.94548 0.93655 0.92632 0.86123 0.89739 0.83178 0.83744 0.78530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.01 37.16 0.33 -1.63 16 2 C -0.11 -1.62 2.60 -90.62 -0.24 -1.86 16 3 C -0.14 -1.65 8.94 37.16 0.33 -1.31 16 4 C 0.08 1.28 2.72 -27.88 -0.08 1.21 16 5 H 0.10 1.43 4.97 -51.93 -0.26 1.17 16 6 F -0.19 -3.50 16.44 2.25 0.04 -3.46 16 7 C 0.49 10.53 6.02 -10.98 -0.07 10.47 16 8 O -0.51 -13.17 15.96 5.56 0.09 -13.08 16 9 N -0.59 -12.32 2.44 -176.44 -0.43 -12.75 16 10 C 0.25 6.29 5.16 -5.20 -0.03 6.26 16 11 C -0.53 -14.81 9.39 -34.45 -0.32 -15.14 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 15 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.19 3.01 5.54 -5.19 -0.03 2.98 16 20 C -0.03 -0.47 6.75 -35.62 -0.24 -0.71 16 21 C -0.19 -2.79 10.81 -39.70 -0.43 -3.22 16 22 C -0.21 -2.63 10.91 -39.70 -0.43 -3.07 16 23 C -0.05 -0.54 12.09 29.41 0.36 -0.19 16 24 O -0.18 -2.37 8.36 5.72 0.05 -2.33 16 25 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.97 7.39 -51.93 -0.38 0.58 16 28 H 0.09 1.50 7.73 -51.93 -0.40 1.10 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.71 7.85 -51.93 -0.41 0.31 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.12 1.89 8.07 -51.93 -0.42 1.47 16 36 H 0.08 1.19 6.25 -51.93 -0.32 0.86 16 37 H 0.15 2.22 8.06 -52.48 -0.42 1.79 16 38 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.20 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -32.69 331.79 -5.90 -38.59 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.42 Total: 1.26 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.93 Total: -4.51 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.31 Total: -38.15 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.14 Total: -15.40 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.69 -5.90 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784378241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.308 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds