Wall clock time and date at job start Tue Mar 31 2020 05:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47210 * 239.99551 * 3 2 1 5 5 H 1.48497 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47063 * 119.99777 * 3 2 1 7 7 C 1.38817 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00237 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00014 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46646 * 35.00126 * 10 9 7 12 12 C 1.50698 * 109.47153 * 275.00126 * 10 9 7 13 13 C 1.38236 * 120.00162 * 319.73065 * 12 10 9 14 14 C 1.38234 * 119.99981 * 179.79074 * 13 12 10 15 15 C 1.38236 * 119.99850 * 0.43341 * 14 13 12 16 16 C 1.38229 * 120.00209 * 359.81530 * 15 14 13 17 17 C 1.38237 * 119.99767 * 139.99596 * 12 10 9 18 18 C 1.52997 * 109.47119 * 155.00024 * 10 9 7 19 19 H 1.09001 * 109.46922 * 305.00299 * 18 10 9 20 20 O 1.42905 * 109.46921 * 65.00030 * 18 10 9 21 21 C 1.50698 * 109.47342 * 185.00286 * 18 10 9 22 22 C 1.38241 * 119.99558 * 279.73112 * 21 18 10 23 23 C 1.38236 * 119.99652 * 179.80707 * 22 21 18 24 24 C 1.38239 * 119.99916 * 0.39535 * 23 22 21 25 25 C 1.38236 * 119.99808 * 359.85914 * 24 23 22 26 26 C 1.38227 * 120.00190 * 99.99730 * 21 18 10 27 27 H 0.97003 * 120.00004 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99817 * 0.02562 * 9 7 2 29 29 H 1.07998 * 119.99615 * 359.97438 * 13 12 10 30 30 H 1.07997 * 119.99811 * 180.27435 * 14 13 12 31 31 H 1.07999 * 119.99506 * 179.83681 * 15 14 13 32 32 H 1.08000 * 120.00132 * 179.97438 * 16 15 14 33 33 H 1.07993 * 120.00028 * 359.97438 * 17 12 10 34 34 H 0.96696 * 114.00036 * 60.00010 * 20 18 10 35 35 H 1.08002 * 120.00204 * 359.97438 * 22 21 18 36 36 H 1.07994 * 120.00174 * 180.22473 * 23 22 21 37 37 H 1.08002 * 119.99931 * 179.82933 * 24 23 22 38 38 H 1.08004 * 119.99518 * 179.97438 * 25 24 23 39 39 H 1.08000 * 120.00215 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 2.4165 -4.0300 -1.4148 13 6 1.5057 -3.8274 -2.4348 14 6 1.8361 -4.1657 -3.7338 15 6 3.0740 -4.7148 -4.0114 16 6 3.9828 -4.9221 -2.9907 17 6 3.6540 -4.5799 -1.6924 18 6 1.1808 -4.7522 0.6101 19 1 0.8485 -4.4421 1.6009 20 8 0.0434 -4.9722 -0.2266 21 6 1.9756 -6.0275 0.7232 22 6 2.1461 -6.8362 -0.3850 23 6 2.8785 -8.0040 -0.2822 24 6 3.4335 -8.3674 0.9306 25 6 3.2586 -7.5613 2.0399 26 6 2.5295 -6.3915 1.9362 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0002 29 1 0.5371 -3.4022 -2.2172 30 1 1.1262 -4.0033 -4.5313 31 1 3.3311 -4.9815 -5.0259 32 1 4.9498 -5.3515 -3.2076 33 1 4.3641 -4.7417 -0.8949 34 1 0.2646 -5.2512 -1.1256 35 1 1.7094 -6.5541 -1.3316 36 1 3.0148 -8.6340 -1.1487 37 1 4.0035 -9.2812 1.0115 38 1 3.6919 -7.8454 2.9876 39 1 2.3930 -5.7617 2.8029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794670408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:35 Heat of formation + Delta-G solvation = 16.275307 kcal Electronic energy + Delta-G solvation = -22277.746285 eV Core-core repulsion = 19150.375083 eV Total energy + Delta-G solvation = -3127.371202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03918 -38.45888 -36.68318 -34.30655 -32.10735 -31.09027 -30.79149 -30.29912 -29.56588 -26.99225 -24.01411 -22.88503 -22.36312 -21.94022 -21.21089 -19.86984 -17.46711 -17.26465 -16.40110 -15.82954 -15.43692 -15.02380 -14.80547 -14.58540 -14.10987 -13.82098 -13.54447 -13.27855 -13.11886 -12.81414 -12.71975 -12.51051 -12.11798 -12.03069 -11.56142 -11.03679 -11.01016 -10.94196 -10.82732 -10.56418 -10.41670 -10.20826 -9.79407 -9.62839 -9.02512 -8.83831 -8.58377 -8.38593 -8.13873 -7.02869 -5.78478 -3.08822 1.44582 1.50896 1.85584 1.89703 3.43101 3.47868 3.48502 3.87982 4.26575 4.54410 4.85918 4.86597 4.98986 5.06705 5.20321 5.27148 5.33179 5.41234 5.51166 5.58101 5.60280 5.66315 5.79348 5.91874 5.95331 6.07011 6.11638 6.17402 6.23407 6.36634 6.51049 6.55630 6.58872 6.61985 6.79763 6.93216 7.01726 7.09689 7.28439 7.51121 7.68367 7.97103 8.38600 9.51220 10.03723 10.41368 11.43030 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.006011 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.070228 B = 4656.667666 C = 5458.429942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.709 5.709 10 C 0.185 3.815 11 H 0.065 0.935 12 C -0.083 4.083 13 C -0.098 4.098 14 C -0.127 4.127 15 C -0.136 4.136 16 C -0.128 4.128 17 C -0.112 4.112 18 C 0.143 3.857 19 H 0.112 0.888 20 O -0.550 6.550 21 C -0.102 4.102 22 C -0.097 4.097 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.110 4.110 27 H 0.256 0.744 28 H 0.391 0.609 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.368 0.632 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -16.055 -1.968 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.349 5.349 10 C 0.074 3.926 11 H 0.083 0.917 12 C -0.086 4.086 13 C -0.116 4.116 14 C -0.145 4.145 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.131 4.131 18 C 0.083 3.917 19 H 0.130 0.870 20 O -0.356 6.356 21 C -0.103 4.103 22 C -0.115 4.115 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.128 4.128 27 H 0.066 0.934 28 H 0.226 0.774 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.217 0.783 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.795 -15.684 -1.398 16.779 hybrid contribution 0.735 0.890 -0.682 1.341 sum 6.530 -14.794 -2.080 16.304 Atomic orbital electron populations 1.69661 1.05036 1.25849 1.56991 1.24720 0.95462 0.97578 1.02593 0.86300 0.78585 0.83618 0.77865 1.21287 1.21646 1.21227 1.19156 0.90902 0.83873 1.43411 0.91349 1.42337 1.06050 0.98802 1.87677 1.19842 0.95221 0.87238 0.90319 0.91723 1.21136 0.93470 0.95306 0.98702 1.21140 1.00589 0.97909 0.91960 1.21129 0.96757 0.99877 0.96758 1.20966 0.94541 1.01437 0.98450 1.20970 0.98937 1.01462 0.93225 1.20982 0.96604 0.99369 0.96161 1.21254 0.85465 0.89620 0.95369 0.86999 1.86607 1.32220 1.90503 1.26282 1.20641 0.98689 0.97164 0.93806 1.20910 0.98350 0.94315 0.97962 1.21047 0.98334 0.96913 0.97515 1.21079 1.00504 0.99719 0.93203 1.21074 0.99440 0.95111 0.98494 1.21027 0.97828 0.96773 0.97181 0.93381 0.77354 0.85309 0.86813 0.87165 0.87171 0.87137 0.78334 0.86478 0.86460 0.86578 0.86354 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.61 9.92 -15.06 -0.15 -6.76 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.71 -17.19 4.35 -54.55 -0.24 -17.42 16 10 C 0.19 3.59 2.39 -69.08 -0.17 3.42 16 11 H 0.06 1.29 7.94 -51.93 -0.41 0.88 16 12 C -0.08 -1.47 3.05 -104.62 -0.32 -1.79 16 13 C -0.10 -1.74 7.29 -39.58 -0.29 -2.03 16 14 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 15 C -0.14 -1.92 10.05 -39.59 -0.40 -2.32 16 16 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 17 C -0.11 -1.80 7.99 -39.58 -0.32 -2.12 16 18 C 0.14 2.43 3.18 -27.89 -0.09 2.34 16 19 H 0.11 1.97 8.00 -51.93 -0.42 1.56 16 20 O -0.55 -9.69 12.47 -35.23 -0.44 -10.13 16 21 C -0.10 -1.49 4.78 -104.63 -0.50 -1.99 16 22 C -0.10 -1.32 7.10 -39.58 -0.28 -1.60 16 23 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.11 -1.46 9.67 -39.59 -0.38 -1.84 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.39 10.27 7.58 -40.82 -0.31 9.96 16 29 H 0.13 2.53 7.39 -52.49 -0.39 2.14 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.11 1.70 8.04 -52.49 -0.42 1.28 16 34 H 0.37 5.79 4.89 45.56 0.22 6.01 16 35 H 0.12 1.59 6.02 -52.49 -0.32 1.28 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.12 1.49 8.04 -52.49 -0.42 1.07 16 LS Contribution 324.28 15.07 4.89 4.89 Total: -1.00 -30.07 324.28 -9.61 -39.68 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -4.54 Total: 17.61 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -4.97 Total: -25.03 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.49 Total: -44.37 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.44 Total: -10.13 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.07 -9.61 -39.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794670408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.955 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds