Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33393 * 125.20473 * 2 1 4 4 C 1.38421 * 114.92338 * 179.97438 * 3 2 1 5 5 C 1.33388 * 114.92205 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.20760 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47416 * 106.22856 * 6 5 4 8 8 C 1.46906 * 110.99757 * 168.92618 * 7 6 5 9 9 C 1.53001 * 109.46822 * 198.95740 * 8 7 6 10 10 H 1.09007 * 109.47142 * 52.91469 * 9 8 7 11 11 O 1.42898 * 109.47114 * 292.91550 * 9 8 7 12 12 C 1.50694 * 109.47003 * 172.91228 * 9 8 7 13 13 H 1.08000 * 120.00119 * 0.02562 * 12 9 8 14 14 C 1.37883 * 120.00280 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99387 * 0.02562 * 14 12 9 16 16 Si 1.86789 * 120.00406 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47514 * 59.99612 * 16 14 12 18 18 H 1.48494 * 109.47483 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47263 * 299.99897 * 16 14 12 20 20 C 1.46899 * 111.00137 * 292.88137 * 7 6 5 21 21 C 1.52999 * 109.47043 * 324.55356 * 20 7 6 22 22 C 1.53003 * 109.46755 * 84.55019 * 20 7 6 23 23 S 1.75879 * 125.20448 * 179.69652 * 2 1 3 24 24 H 1.08996 * 109.47081 * 89.99848 * 1 2 3 25 25 H 1.09004 * 109.46635 * 329.99946 * 1 2 3 26 26 H 1.08998 * 109.46721 * 209.99948 * 1 2 3 27 27 H 1.08004 * 122.53606 * 359.95936 * 3 2 1 28 28 H 1.07994 * 122.53909 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.47292 * 226.23525 * 6 5 4 30 30 H 1.09004 * 109.46820 * 346.23204 * 6 5 4 31 31 H 1.08998 * 109.46877 * 318.95608 * 8 7 6 32 32 H 1.08998 * 109.46918 * 78.95773 * 8 7 6 33 33 H 0.96703 * 113.99945 * 299.99607 * 11 9 8 34 34 H 0.97003 * 119.99581 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.46914 * 204.55176 * 20 7 6 36 36 H 1.08995 * 109.47468 * 69.72207 * 21 20 7 37 37 H 1.09005 * 109.46859 * 189.72327 * 21 20 7 38 38 H 1.09003 * 109.46964 * 309.71622 * 21 20 7 39 39 H 1.09003 * 109.46745 * 66.48874 * 22 20 7 40 40 H 1.09001 * 109.46407 * 186.47961 * 22 20 7 41 41 H 1.08998 * 109.47386 * 306.48379 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9771 0.0005 7 7 5.7086 -1.5116 1.3302 8 6 6.9674 -2.2683 1.3022 9 6 7.0390 -3.1844 2.5256 10 1 6.1350 -3.7912 2.5785 11 8 7.1503 -2.3911 3.7089 12 6 8.2420 -4.0846 2.4093 13 1 8.8908 -4.0104 1.5491 14 6 8.5143 -5.0030 3.4010 15 7 7.7239 -5.0937 4.4482 16 14 10.0058 -6.1183 3.2572 17 1 11.2373 -5.2915 3.1860 18 1 10.0753 -7.0076 4.4444 19 1 9.8911 -6.9422 2.0270 20 6 5.7622 -0.4373 2.3307 21 6 6.3362 0.8280 1.6900 22 6 4.3510 -0.1517 2.8483 23 16 2.5209 -1.4371 0.0076 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5138 27 1 1.8669 2.0895 -0.0006 28 1 4.3720 1.6350 0.0002 29 1 5.4765 -1.7702 -0.7418 30 1 6.0768 -0.1701 -0.2441 31 1 7.0094 -2.8703 0.3945 32 1 7.8084 -1.5751 1.3177 33 1 7.9337 -1.8247 3.7305 34 1 7.9157 -5.7395 5.1461 35 1 6.3983 -0.7451 3.1605 36 1 5.6170 1.2332 0.9782 37 1 6.5374 1.5682 2.4645 38 1 7.2632 0.5840 1.1710 39 1 3.9867 -1.0150 3.4052 40 1 4.3737 0.7196 3.5029 41 1 3.6876 0.0438 2.0059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809572511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = -6.568836 kcal Electronic energy + Delta-G solvation = -20933.264074 eV Core-core repulsion = 17940.346227 eV Total energy + Delta-G solvation = -2992.917847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.20141 -37.32415 -35.20989 -32.25238 -32.01748 -31.52679 -28.96803 -27.07190 -26.84223 -24.55561 -23.33488 -22.54196 -20.77073 -19.46758 -18.48274 -16.98254 -16.77217 -15.35952 -15.28699 -14.84883 -14.57847 -14.32008 -13.90956 -13.55463 -13.34800 -13.23996 -12.95286 -12.63305 -12.59073 -12.24077 -12.15630 -11.80855 -11.63169 -11.23755 -11.12933 -10.97163 -10.90474 -10.77501 -10.74999 -10.49154 -10.41089 -10.13674 -9.79929 -9.02044 -8.54757 -8.30576 -8.25369 -7.97378 -7.54209 -5.98328 -4.16968 1.13577 1.78511 2.23337 2.83800 3.29620 3.35322 3.36676 4.35577 4.57147 4.87210 5.03926 5.21921 5.27627 5.38638 5.41828 5.42347 5.56233 5.60362 5.73396 5.75283 5.86542 5.87492 6.00683 6.09857 6.17620 6.23898 6.30957 6.37694 6.41318 6.42895 6.50835 6.65033 6.77582 6.90147 7.01161 7.60546 7.74361 7.78650 8.01383 8.23416 8.86411 9.38492 9.59744 11.05490 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028939 B = 0.004193 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.308544 B = 6675.801227 C = 6953.104643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.201 4.201 3 C -0.138 4.138 4 C -0.150 4.150 5 C -0.141 4.141 6 C 0.109 3.891 7 N -0.521 5.521 8 C 0.032 3.968 9 C 0.239 3.761 10 H 0.064 0.936 11 O -0.555 6.555 12 C -0.574 4.574 13 H 0.053 0.947 14 C 0.081 3.919 15 N -0.857 5.857 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.062 3.938 21 C -0.188 4.188 22 C -0.148 4.148 23 S 0.129 5.871 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.339 0.661 34 H 0.261 0.739 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.041 0.959 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 12.325 -8.985 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.318 4.318 3 C -0.169 4.169 4 C -0.181 4.181 5 C -0.259 4.259 6 C -0.021 4.021 7 N -0.244 5.244 8 C -0.096 4.096 9 C 0.181 3.819 10 H 0.082 0.918 11 O -0.358 6.358 12 C -0.613 4.613 13 H 0.072 0.928 14 C -0.125 4.125 15 N -0.492 5.492 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.046 4.046 21 C -0.247 4.247 22 C -0.205 4.205 23 S 0.394 5.606 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.183 0.817 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.390 10.010 -8.517 17.392 hybrid contribution 2.383 1.719 -0.488 2.979 sum -9.006 11.729 -9.006 17.315 Atomic orbital electron populations 1.20269 0.88333 1.02867 1.02254 1.24515 0.99831 0.96640 1.10838 1.19936 0.92867 0.98841 1.05255 1.20031 0.96000 0.95871 1.06191 1.24397 0.98877 0.95983 1.06686 1.20727 0.89121 0.98791 0.93418 1.62284 1.34876 1.24094 1.03180 1.23071 0.87504 0.96253 1.02739 1.19362 0.97107 0.86558 0.78841 0.91782 1.86588 1.45771 1.58544 1.44867 1.21597 1.12016 1.20734 1.06929 0.92842 1.25014 0.96132 0.96322 0.95069 1.70077 1.36520 1.34056 1.08559 0.86751 0.83397 0.80734 0.77535 1.20253 1.21217 1.20182 1.22132 0.98146 0.88203 0.96132 1.22657 1.00753 0.99805 1.01456 1.22061 0.97141 1.00313 1.01020 1.84449 0.95851 1.08400 1.71912 0.91197 0.90968 0.91473 0.85096 0.84620 0.90367 0.92725 0.91612 0.95720 0.81688 0.92959 0.86718 0.92041 0.92880 0.93297 0.92538 0.94041 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.38 36.01 0.37 -0.33 16 2 C -0.20 -2.38 6.51 -36.00 -0.23 -2.62 16 3 C -0.14 -1.62 9.91 -41.21 -0.41 -2.03 16 4 C -0.15 -1.91 7.31 -41.21 -0.30 -2.21 16 5 C -0.14 -2.00 3.76 -36.01 -0.14 -2.13 16 6 C 0.11 1.65 5.04 -4.98 -0.03 1.63 16 7 N -0.52 -9.35 4.35 -228.08 -0.99 -10.35 16 8 C 0.03 0.64 4.67 -3.82 -0.02 0.62 16 9 C 0.24 5.96 3.03 -27.88 -0.08 5.88 16 10 H 0.06 1.83 8.14 -51.93 -0.42 1.41 16 11 O -0.56 -13.80 10.02 -35.23 -0.35 -14.15 16 12 C -0.57 -15.58 8.75 -34.44 -0.30 -15.88 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 14 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 15 N -0.86 -25.27 12.84 55.43 0.71 -24.56 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.06 1.05 2.59 -67.71 -0.18 0.88 16 21 C -0.19 -2.68 7.78 37.16 0.29 -2.39 16 22 C -0.15 -2.45 9.17 37.16 0.34 -2.11 16 23 S 0.13 1.79 23.01 -107.50 -2.47 -0.68 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 28 H 0.14 1.57 6.15 -52.49 -0.32 1.24 16 29 H 0.08 1.17 7.81 -51.93 -0.41 0.77 16 30 H 0.05 0.78 5.72 -51.93 -0.30 0.48 16 31 H 0.07 1.31 7.72 -51.93 -0.40 0.91 16 32 H 0.02 0.48 7.40 -51.93 -0.38 0.10 16 33 H 0.34 7.56 8.69 45.56 0.40 7.95 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.12 2.23 4.60 -51.93 -0.24 1.99 16 36 H 0.06 0.80 3.50 -51.93 -0.18 0.62 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.70 7.06 -51.93 -0.37 0.34 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.01 3.38 -51.93 -0.18 0.83 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -29.54 328.49 -9.25 -38.79 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.30 Total: 8.44 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -0.78 Total: -18.52 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.28 Total: -34.90 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.35 Total: -14.15 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.47 Total: -0.68 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.54 -9.25 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.225 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds