Wall clock time and date at job start Tue Mar 31 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39550 * 120.14338 * 330.71398 * 3 2 1 5 5 C 1.37953 * 119.85576 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.13989 * 359.73096 * 5 4 3 7 7 C 1.38318 * 120.28627 * 0.54916 * 6 5 4 8 8 C 1.37995 * 120.13927 * 359.44898 * 7 6 5 9 9 C 1.50709 * 120.06764 * 180.29574 * 8 7 6 10 10 C 1.50696 * 109.47059 * 264.99857 * 9 8 7 11 11 O 1.21281 * 120.00415 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99806 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00138 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47466 * 178.27725 * 13 12 10 15 15 C 1.50703 * 115.54795 * 65.14263 * 14 13 12 16 16 H 1.08004 * 120.00084 * 265.40555 * 15 14 13 17 17 C 1.37869 * 120.00284 * 85.40586 * 15 14 13 18 18 N 1.31519 * 119.99793 * 353.55629 * 17 15 14 19 19 Si 1.86801 * 120.00284 * 173.55623 * 17 15 14 20 20 H 1.48495 * 109.46994 * 59.99926 * 19 17 15 21 21 H 1.48500 * 109.47232 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47078 * 299.99874 * 19 17 15 23 23 C 1.53001 * 117.50179 * 279.47447 * 14 13 12 24 24 C 1.52997 * 117.50194 * 210.81549 * 14 13 12 25 25 H 4.52082 * 14.02202 * 359.97438 * 4 2 1 26 26 H 1.07999 * 120.07336 * 359.96341 * 4 3 2 27 27 H 1.07997 * 119.92951 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.85480 * 180.27235 * 6 5 4 29 29 H 1.07994 * 119.92696 * 179.72635 * 7 6 5 30 30 H 1.08998 * 109.46953 * 25.00576 * 9 8 7 31 31 H 1.09003 * 109.46453 * 144.99959 * 9 8 7 32 32 H 0.97003 * 120.00608 * 359.97438 * 12 10 9 33 33 H 1.08998 * 109.46713 * 298.28245 * 13 12 10 34 34 H 1.09006 * 109.46656 * 58.28033 * 13 12 10 35 35 H 0.96996 * 120.00025 * 185.06642 * 18 17 15 36 36 H 1.09004 * 117.49487 * 359.97438 * 23 14 13 37 37 H 1.08998 * 117.50280 * 145.01636 * 23 14 13 38 38 H 1.09003 * 117.49786 * 214.98408 * 24 14 13 39 39 H 1.09005 * 117.49744 * 359.97180 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3073 -1.0516 0.5903 5 6 4.6868 -1.0452 0.5865 6 6 5.3751 -0.0012 -0.0059 7 6 4.6860 1.0476 -0.5877 8 6 3.3060 1.0531 -0.5905 9 6 2.5568 2.1933 -1.2307 10 6 2.1998 3.2127 -0.1798 11 8 2.5224 3.0315 0.9752 12 7 1.5221 4.3258 -0.5235 13 6 1.1755 5.3171 0.4981 14 6 0.4520 6.4945 -0.1585 15 6 -0.8896 6.1757 -0.7664 16 1 -0.9632 5.9352 -1.8167 17 6 -2.0232 6.1909 0.0183 18 7 -1.9205 6.3582 1.3187 19 14 -3.7048 5.9740 -0.7656 20 1 -3.7637 4.6603 -1.4554 21 1 -4.7520 6.0289 0.2859 22 1 -3.9357 7.0611 -1.7505 23 6 1.3107 7.5510 -0.8566 24 6 0.6301 7.8755 0.4755 25 1 -1.0500 -0.0007 0.0009 26 1 2.7712 -1.8691 1.0494 27 1 5.2307 -1.8591 1.0426 28 1 6.4551 -0.0031 -0.0102 29 1 5.2290 1.8616 -1.0445 30 1 3.1842 2.6591 -1.9906 31 1 1.6457 1.8146 -1.6940 32 1 1.2643 4.4710 -1.4473 33 1 0.5237 4.8593 1.2422 34 1 2.0850 5.6736 0.9817 35 1 -2.7094 6.2956 1.8796 36 1 2.3912 7.4073 -0.8477 37 1 0.9052 8.0157 -1.7553 38 1 -0.2230 8.5536 0.4526 39 1 1.2624 7.9452 1.3607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810713183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:22 Heat of formation + Delta-G solvation = 57.859436 kcal Electronic energy + Delta-G solvation = -21150.357940 eV Core-core repulsion = 18024.789961 eV Total energy + Delta-G solvation = -3125.567979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83690 -38.49519 -36.65182 -33.82808 -33.23063 -32.53732 -31.98016 -30.16335 -28.13570 -25.95748 -24.94933 -23.25081 -21.81278 -21.18543 -19.73859 -19.31004 -18.63204 -16.72769 -16.28876 -15.98439 -15.67586 -15.29672 -14.73107 -14.62678 -14.33171 -13.81566 -13.66007 -13.29058 -13.05550 -12.82125 -12.43728 -12.22274 -11.64404 -11.56106 -11.40274 -11.19060 -11.04448 -11.01330 -10.92570 -10.56324 -10.30024 -10.27900 -9.66679 -9.35558 -8.98384 -8.78839 -8.51132 -8.40985 -8.25799 -8.06060 -6.08871 -4.17858 0.99776 1.36833 2.89303 3.11988 3.24861 3.25431 3.31552 3.32612 3.82885 4.17676 4.33994 4.40947 4.72803 4.85521 4.99189 5.18737 5.24000 5.26456 5.42664 5.50928 5.54189 5.65703 5.74028 6.00707 6.04939 6.14234 6.32825 6.41517 6.45320 6.46305 6.56338 6.58450 6.67954 6.88636 6.94729 7.08403 7.30225 7.42986 7.48057 7.68113 7.79838 8.31850 8.33165 8.82407 8.92536 9.48939 10.98965 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.004369 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.577826 B = 6406.950300 C = 7308.961685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.151 4.151 3 C 0.027 3.973 4 C -0.098 4.098 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.108 4.108 8 C -0.034 4.034 9 C -0.109 4.109 10 C 0.508 3.492 11 O -0.548 6.548 12 N -0.704 5.704 13 C 0.165 3.835 14 C 0.028 3.972 15 C -0.501 4.501 16 H 0.059 0.941 17 C 0.075 3.925 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.223 0.777 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.075 -11.561 -5.290 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.151 4.151 3 C 0.027 3.973 4 C -0.116 4.116 5 C -0.142 4.142 6 C -0.130 4.130 7 C -0.126 4.126 8 C -0.034 4.034 9 C -0.149 4.149 10 C 0.293 3.707 11 O -0.426 6.426 12 N -0.353 5.353 13 C 0.042 3.958 14 C 0.027 3.973 15 C -0.539 4.539 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.240 0.760 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.174 -11.580 -4.267 15.994 hybrid contribution -1.374 0.062 -0.660 1.526 sum 8.799 -11.519 -4.927 15.310 Atomic orbital electron populations 1.24913 0.95804 0.99170 0.98755 1.19922 0.91999 1.01441 1.01694 1.15783 0.86600 0.95273 0.99674 1.21125 0.94208 0.97582 0.98700 1.21004 0.93823 0.99064 1.00347 1.21169 0.99860 0.94114 0.97891 1.20918 0.92988 0.98529 1.00192 1.19401 0.93383 0.93560 0.97054 1.20736 1.01911 0.94095 0.98130 1.20224 0.78781 0.82349 0.89386 1.90679 1.54658 1.77103 1.20176 1.45955 1.55663 1.20678 1.12991 1.20971 0.96421 0.88726 0.89721 1.19029 0.94102 0.86182 0.97941 1.20296 0.89271 1.49164 0.95168 0.92250 1.24980 0.98878 0.94287 0.94824 1.69968 1.29828 1.47731 1.03468 0.86700 0.83828 0.78689 0.79016 1.20239 1.21270 1.20182 1.23021 0.96418 1.08670 0.96675 1.22490 1.00950 1.01838 0.93364 0.76010 0.85807 0.85788 0.85863 0.85656 0.88109 0.88073 0.76676 0.91077 0.94601 0.92777 0.91672 0.90354 0.89828 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 19.25 29.55 0.57 -1.89 16 2 C -0.15 -2.40 11.79 -38.83 -0.46 -2.86 16 3 C 0.03 0.41 5.72 -107.01 -0.61 -0.20 16 4 C -0.10 -1.27 9.75 -39.20 -0.38 -1.65 16 5 C -0.12 -1.38 10.03 -39.64 -0.40 -1.77 16 6 C -0.11 -1.24 10.04 -39.50 -0.40 -1.64 16 7 C -0.11 -1.37 9.67 -39.64 -0.38 -1.75 16 8 C -0.03 -0.50 4.41 -104.23 -0.46 -0.95 16 9 C -0.11 -1.57 5.35 -29.03 -0.16 -1.73 16 10 C 0.51 9.68 7.82 -10.99 -0.09 9.59 16 11 O -0.55 -12.60 16.03 5.56 0.09 -12.51 16 12 N -0.70 -13.75 5.48 -60.29 -0.33 -14.08 16 13 C 0.16 3.78 5.50 -4.04 -0.02 3.76 16 14 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 15 C -0.50 -12.81 8.63 -34.44 -0.30 -13.10 16 16 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 17 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 18 N -0.87 -24.26 12.91 55.43 0.72 -23.54 16 19 Si 0.89 20.40 29.55 -169.99 -5.02 15.38 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C -0.21 -4.35 9.96 -26.70 -0.27 -4.61 16 24 C -0.15 -3.39 9.42 -26.70 -0.25 -3.64 16 25 H 0.22 2.47 7.80 -54.09 -0.42 2.05 16 26 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 27 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.10 1.39 7.28 -51.93 -0.38 1.01 16 32 H 0.40 7.03 8.37 -40.82 -0.34 6.69 16 33 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 34 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.26 7.03 8.32 -40.82 -0.34 6.70 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -31.37 348.06 -8.54 -39.92 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.33 Total: 9.74 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -3.91 Total: -20.14 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.39 Total: -37.63 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.37 -8.54 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810713183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.776 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds