Wall clock time and date at job start Tue Mar 31 2020 05:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00089 * 2 1 4 4 H 1.48492 * 109.47185 * 270.00471 * 3 2 1 5 5 H 1.48502 * 109.46804 * 30.00313 * 3 2 1 6 6 H 1.48497 * 109.47144 * 150.00088 * 3 2 1 7 7 C 1.37877 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00359 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99932 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00088 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47438 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47062 * 64.99656 * 12 11 10 14 14 C 1.46899 * 110.99701 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47432 * 34.99939 * 14 13 12 16 16 C 1.52999 * 109.47123 * 274.99985 * 14 13 12 17 17 O 1.42903 * 109.47256 * 295.00582 * 16 14 13 18 18 C 1.50705 * 109.46995 * 155.00278 * 14 13 12 19 19 C 1.38247 * 119.97426 * 39.72176 * 18 14 13 20 20 C 1.38196 * 120.02011 * 179.72767 * 19 18 14 21 21 C 1.38454 * 119.97671 * 0.52560 * 20 19 18 22 22 F 1.35099 * 120.02498 * 179.72641 * 21 20 19 23 23 C 1.38452 * 119.95050 * 359.74710 * 21 20 19 24 24 C 1.38202 * 119.97381 * 0.02562 * 23 21 20 25 25 H 0.97003 * 119.99916 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47451 * 59.99415 * 9 7 2 27 27 H 1.08998 * 109.46655 * 299.99862 * 9 7 2 28 28 H 1.09005 * 109.47049 * 59.99653 * 11 10 9 29 29 H 1.08998 * 109.47031 * 299.99868 * 11 10 9 30 30 H 1.09007 * 109.46847 * 305.00079 * 12 11 10 31 31 H 1.08997 * 109.47503 * 185.00097 * 12 11 10 32 32 H 1.00897 * 110.99603 * 56.05138 * 13 12 11 33 33 H 1.08997 * 109.47286 * 175.00142 * 16 14 13 34 34 H 1.09008 * 109.47201 * 54.99922 * 16 14 13 35 35 H 0.96700 * 114.00311 * 180.02562 * 17 16 14 36 36 H 1.08002 * 119.98395 * 359.97438 * 19 18 14 37 37 H 1.08002 * 120.00883 * 180.29767 * 20 19 18 38 38 H 1.08005 * 120.01485 * 179.97438 * 23 21 20 39 39 H 1.08000 * 119.98701 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8754 -0.0032 12 6 2.6480 -5.9562 -0.0049 13 7 3.4090 -5.8888 1.2498 14 6 4.4605 -6.9141 1.2834 15 1 4.8618 -7.0561 0.2799 16 6 3.8711 -8.2326 1.7883 17 8 3.4505 -8.0778 3.1452 18 6 5.5650 -6.4708 2.2080 19 6 5.2574 -5.8329 3.3953 20 6 6.2692 -5.4311 4.2466 21 6 7.5916 -5.6578 3.9049 22 9 8.5817 -5.2605 4.7337 23 6 7.8986 -6.2918 2.7129 24 6 6.8850 -6.6970 1.8653 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8880 28 1 0.9446 -4.9819 -0.8931 29 1 0.9453 -4.9830 0.8869 30 1 3.3209 -5.7950 -0.8472 31 1 2.1820 -6.9374 -0.0949 32 1 2.7977 -5.9710 2.0483 33 1 4.6278 -9.0150 1.7295 34 1 3.0153 -8.5078 1.1718 35 1 3.0660 -8.8766 3.5314 36 1 4.2259 -5.6521 3.6595 37 1 6.0286 -4.9370 5.1763 38 1 8.9298 -6.4688 2.4451 39 1 7.1242 -7.1911 0.9353 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815087653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:08 Heat of formation + Delta-G solvation = -117.452802 kcal Electronic energy + Delta-G solvation = -21737.188643 eV Core-core repulsion = 18173.249330 eV Total energy + Delta-G solvation = -3563.939312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.84563 -39.61349 -37.57532 -36.71040 -35.08568 -32.70894 -31.56966 -31.06043 -28.73829 -27.32841 -26.25646 -23.36549 -23.03605 -22.24609 -21.46708 -20.61456 -17.86435 -17.56380 -16.44535 -16.27740 -15.96570 -15.88320 -15.55239 -15.30085 -14.94720 -14.72732 -14.25585 -14.10168 -13.63233 -13.44227 -13.24497 -13.05501 -12.61937 -12.48006 -12.43527 -11.80942 -11.61815 -11.44107 -11.14991 -10.90995 -10.79020 -10.70508 -10.48908 -10.24552 -9.94960 -9.03781 -9.02129 -8.76143 -8.51008 -8.21540 -8.09098 -6.05446 -4.06113 1.19095 1.33152 3.34800 3.39574 3.46276 3.58567 3.95524 4.30741 4.32963 4.40474 4.60004 4.75665 4.86212 4.90477 4.95436 5.13207 5.24702 5.29485 5.31280 5.36809 5.51554 5.53758 5.68985 5.94054 5.99840 6.06193 6.09706 6.15890 6.28727 6.34217 6.59381 6.94230 7.12532 7.16740 7.35601 7.48719 7.54826 7.86814 8.22496 8.66869 9.08695 9.58700 11.06280 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.003999 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.525076 B = 7000.864873 C = 8478.612820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.064 3.936 13 N -0.664 5.664 14 C 0.128 3.872 15 H 0.098 0.902 16 C 0.048 3.952 17 O -0.563 6.563 18 C -0.070 4.070 19 C -0.039 4.039 20 C -0.158 4.158 21 C 0.090 3.910 22 F -0.146 7.146 23 C -0.160 4.160 24 C -0.091 4.091 25 H 0.263 0.737 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.040 0.960 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.350 0.650 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.378 0.622 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.674 -20.172 4.993 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.065 4.065 13 N -0.296 5.296 14 C 0.018 3.982 15 H 0.116 0.884 16 C -0.032 4.032 17 O -0.368 6.368 18 C -0.071 4.071 19 C -0.058 4.058 20 C -0.177 4.177 21 C 0.071 3.929 22 F -0.125 7.125 23 C -0.179 4.179 24 C -0.110 4.110 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.170 0.830 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.225 0.775 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.383 -18.881 4.690 22.052 hybrid contribution -0.561 -0.427 0.311 0.770 sum 9.822 -19.308 5.001 22.232 Atomic orbital electron populations 1.69965 1.06103 1.27030 1.50969 1.24936 0.94944 0.99380 0.95257 0.86357 0.79762 0.82337 0.78182 1.20527 1.21137 1.19573 1.21070 0.94115 0.89344 1.50266 0.91511 1.20182 0.88845 0.83933 0.95093 1.87964 1.34613 1.12304 1.95012 1.22208 0.93791 0.86403 0.98898 1.22048 0.95891 0.95685 0.92844 1.60358 1.16378 1.48021 1.04858 1.20592 0.91760 0.88242 0.97624 0.88386 1.22914 0.98129 0.98493 0.83647 1.86500 1.83346 1.40358 1.26625 1.19642 0.93261 0.98790 0.95434 1.20801 0.99334 0.93547 0.92096 1.21179 0.91074 1.03526 1.01937 1.17728 0.85087 1.00213 0.89896 1.91471 1.60906 1.88958 1.71139 1.20975 1.00459 1.02330 0.94160 1.20803 0.91606 0.99510 0.99043 0.92764 0.98049 0.97882 0.94181 0.94768 0.90290 0.94927 0.82997 0.93264 0.93349 0.77528 0.84676 0.85026 0.85194 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.42 5.69 36.01 0.20 5.62 16 10 O -0.38 -9.29 10.27 -35.23 -0.36 -9.66 16 11 C 0.07 1.19 6.22 37.16 0.23 1.42 16 12 C 0.06 0.90 5.87 -3.82 -0.02 0.88 16 13 N -0.66 -9.38 5.64 -107.95 -0.61 -9.99 16 14 C 0.13 1.42 2.65 -68.86 -0.18 1.24 16 15 H 0.10 0.98 7.66 -51.93 -0.40 0.58 16 16 C 0.05 0.40 6.71 37.16 0.25 0.65 16 17 O -0.56 -4.94 11.48 -35.23 -0.40 -5.34 16 18 C -0.07 -0.86 4.83 -104.62 -0.51 -1.37 16 19 C -0.04 -0.52 8.32 -39.59 -0.33 -0.85 16 20 C -0.16 -2.06 10.03 -39.52 -0.40 -2.46 16 21 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16 22 F -0.15 -1.97 17.27 2.25 0.04 -1.93 16 23 C -0.16 -1.84 10.03 -39.52 -0.40 -2.24 16 24 C -0.09 -1.00 9.67 -39.59 -0.38 -1.39 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 31 H 0.03 0.36 7.36 -51.93 -0.38 -0.02 16 32 H 0.35 4.92 7.28 -39.29 -0.29 4.63 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.37 7.35 -51.92 -0.38 -0.01 16 35 H 0.38 1.73 9.12 45.56 0.42 2.14 16 36 H 0.14 1.83 7.01 -52.49 -0.37 1.46 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.13 1.06 8.04 -52.49 -0.42 0.64 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -33.96 335.83 -7.55 -41.51 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.74 Total: 1.43 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.24 Total: -11.77 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.13 Total: -36.64 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.77 Total: -15.00 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.96 -7.55 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815087653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.944 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds