Wall clock time and date at job start Tue Mar 31 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99756 * 2 1 4 4 H 1.48504 * 109.47456 * 239.99900 * 3 2 1 5 5 H 1.48503 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47258 * 120.00020 * 3 2 1 7 7 C 1.37875 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99844 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00231 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46983 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47312 * 65.00425 * 12 11 10 14 14 C 1.46897 * 111.00296 * 179.97438 * 13 12 11 15 15 H 1.09004 * 109.46772 * 325.00164 * 14 13 12 16 16 C 1.53006 * 109.47346 * 84.99422 * 14 13 12 17 17 O 1.42906 * 109.46752 * 65.00065 * 16 14 13 18 18 C 1.50699 * 109.47459 * 204.99681 * 14 13 12 19 19 C 1.38246 * 119.97250 * 319.72405 * 18 14 13 20 20 C 1.38194 * 120.02567 * 179.76492 * 19 18 14 21 21 C 1.38465 * 119.97135 * 0.50668 * 20 19 18 22 22 F 1.35101 * 120.02141 * 179.76570 * 21 20 19 23 23 C 1.38455 * 119.95070 * 359.74689 * 21 20 19 24 24 C 1.38204 * 119.97372 * 359.97438 * 23 21 20 25 25 H 0.97003 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47053 * 60.00307 * 9 7 2 27 27 H 1.08995 * 109.47513 * 300.00098 * 9 7 2 28 28 H 1.08997 * 109.46819 * 60.00044 * 11 10 9 29 29 H 1.09000 * 109.46879 * 300.00165 * 11 10 9 30 30 H 1.09003 * 109.47284 * 304.99757 * 12 11 10 31 31 H 1.08999 * 109.46876 * 185.00026 * 12 11 10 32 32 H 1.00910 * 110.99695 * 303.94841 * 13 12 11 33 33 H 1.08993 * 109.46955 * 185.00483 * 16 14 13 34 34 H 1.09000 * 109.47050 * 305.00312 * 16 14 13 35 35 H 0.96698 * 113.99404 * 180.02562 * 17 16 14 36 36 H 1.07998 * 119.98555 * 0.02562 * 19 18 14 37 37 H 1.07998 * 120.01555 * 180.25510 * 20 19 18 38 38 H 1.07993 * 120.01557 * 179.97438 * 23 21 20 39 39 H 1.08001 * 119.98498 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0019 12 6 2.6481 -5.9561 0.0023 13 7 3.4081 -5.8874 1.2574 14 6 4.4589 -6.9133 1.2936 15 1 4.1059 -7.8128 0.7892 16 6 5.7089 -6.3883 0.5843 17 8 6.2388 -5.2786 1.3122 18 6 4.7938 -7.2392 2.7263 19 6 4.8667 -6.2277 3.6658 20 6 5.1690 -6.5258 4.9809 21 6 5.4092 -7.8371 5.3553 22 9 5.7094 -8.1292 6.6397 23 6 5.3410 -8.8487 4.4124 24 6 5.0329 -8.5488 3.0989 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 0.9446 -4.9826 -0.8878 29 1 0.9453 -4.9823 0.8922 30 1 3.3216 -5.7959 -0.8397 31 1 2.1821 -6.9374 -0.0869 32 1 3.7968 -4.9663 1.3948 33 1 6.4567 -7.1796 0.5328 34 1 5.4473 -6.0695 -0.4246 35 1 7.0341 -4.8940 0.9189 36 1 4.6833 -5.2045 3.3727 37 1 5.2219 -5.7360 5.7155 38 1 5.5285 -9.8717 4.7031 39 1 4.9792 -9.3378 2.3634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815087654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:10 Heat of formation + Delta-G solvation = -121.436159 kcal Electronic energy + Delta-G solvation = -21745.076345 eV Core-core repulsion = 18180.964301 eV Total energy + Delta-G solvation = -3564.112044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.90971 -39.62112 -37.55857 -36.71227 -34.99477 -32.76244 -31.56828 -31.11326 -28.75406 -27.31393 -26.27413 -23.37078 -23.07556 -22.34521 -21.36445 -20.58795 -17.81284 -17.52896 -16.49010 -16.29660 -15.96212 -15.84176 -15.60905 -15.30062 -15.08115 -14.56347 -14.39440 -14.12431 -13.65684 -13.47431 -13.29542 -13.11784 -12.53585 -12.48028 -12.27746 -11.80130 -11.64691 -11.37441 -11.24206 -10.95026 -10.82697 -10.75982 -10.55700 -10.11594 -10.01216 -9.12110 -9.08622 -8.82780 -8.57483 -8.24118 -8.17217 -6.10695 -4.12601 1.12921 1.26674 3.31856 3.34813 3.38339 3.55303 4.04338 4.24471 4.34635 4.41157 4.64795 4.73321 4.85948 4.91348 4.99492 5.23380 5.25729 5.27497 5.31433 5.38800 5.46353 5.52329 5.70655 5.89071 6.02314 6.05440 6.09908 6.16627 6.29056 6.34327 6.56530 6.88950 7.10760 7.16995 7.43819 7.52636 7.64474 7.78728 8.15303 8.57291 9.00107 9.52191 11.00793 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.003393 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.338491 B = 8251.431708 C = 8733.576190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.398 6.398 11 C 0.062 3.938 12 C 0.065 3.935 13 N -0.677 5.677 14 C 0.127 3.873 15 H 0.095 0.905 16 C 0.049 3.951 17 O -0.561 6.561 18 C -0.070 4.070 19 C -0.042 4.042 20 C -0.158 4.158 21 C 0.089 3.911 22 F -0.146 7.146 23 C -0.161 4.161 24 C -0.093 4.093 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.006 0.994 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.367 0.633 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.380 0.620 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.540 -17.963 3.761 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.124 3.876 10 O -0.318 6.318 11 C -0.016 4.016 12 C -0.064 4.064 13 N -0.310 5.310 14 C 0.017 3.983 15 H 0.113 0.887 16 C -0.031 4.031 17 O -0.367 6.367 18 C -0.071 4.071 19 C -0.060 4.060 20 C -0.177 4.177 21 C 0.069 3.931 22 F -0.125 7.125 23 C -0.180 4.180 24 C -0.111 4.111 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.189 0.811 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.227 0.773 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.606 -18.304 4.536 21.635 hybrid contribution 1.164 1.226 -0.806 1.873 sum 11.770 -17.078 3.730 21.074 Atomic orbital electron populations 1.69952 1.06110 1.27264 1.50444 1.24943 0.94964 0.99411 0.95153 0.86403 0.79318 0.81971 0.78807 1.20093 1.21169 1.19966 1.21009 0.93960 0.89407 1.50955 0.91666 1.20164 0.88677 0.83435 0.95353 1.87792 1.35739 1.13083 1.95230 1.22283 0.94460 0.85294 0.99595 1.22017 0.95754 0.98183 0.90480 1.60543 1.25746 1.09566 1.35192 1.20574 0.89418 0.96273 0.92078 0.88683 1.22851 0.96210 0.89232 0.94793 1.86485 1.47786 1.48448 1.53938 1.19689 0.99233 0.92826 0.95361 1.20898 0.93921 1.00390 0.90798 1.21208 1.03623 0.94868 0.98000 1.17742 1.02480 0.94158 0.78673 1.91473 1.90915 1.94244 1.35854 1.20973 1.04929 0.98800 0.93279 1.20809 0.99077 0.96022 0.95211 0.92596 0.97885 0.97617 0.94121 0.93487 0.94774 0.90641 0.81122 0.93552 0.93080 0.77308 0.84354 0.84967 0.85221 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -15.08 9.43 -34.44 -0.32 -15.41 16 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.20 5.41 5.69 36.01 0.20 5.61 16 10 O -0.40 -9.36 9.85 -35.23 -0.35 -9.70 16 11 C 0.06 1.12 6.28 37.16 0.23 1.36 16 12 C 0.06 0.92 5.90 -3.83 -0.02 0.90 16 13 N -0.68 -9.66 5.71 -107.95 -0.62 -10.27 16 14 C 0.13 1.43 2.65 -68.86 -0.18 1.24 16 15 H 0.10 0.89 7.66 -51.93 -0.40 0.49 16 16 C 0.05 0.49 6.71 37.16 0.25 0.74 16 17 O -0.56 -6.31 11.43 -35.23 -0.40 -6.71 16 18 C -0.07 -0.82 4.83 -104.62 -0.51 -1.33 16 19 C -0.04 -0.54 8.31 -39.59 -0.33 -0.87 16 20 C -0.16 -1.95 10.03 -39.51 -0.40 -2.35 16 21 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 22 F -0.15 -1.84 17.27 2.25 0.04 -1.81 16 23 C -0.16 -1.69 10.03 -39.51 -0.40 -2.09 16 24 C -0.09 -0.94 9.67 -39.59 -0.38 -1.32 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.48 7.36 -51.93 -0.38 0.10 16 31 H 0.08 0.88 8.05 -51.93 -0.42 0.47 16 32 H 0.37 6.09 6.85 -39.29 -0.27 5.82 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.53 7.35 -51.93 -0.38 0.14 16 35 H 0.38 2.81 9.12 45.56 0.42 3.23 16 36 H 0.14 1.94 6.99 -52.49 -0.37 1.57 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.13 0.94 8.04 -52.49 -0.42 0.52 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -32.25 335.05 -7.53 -39.78 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.73 Total: 4.29 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.24 Total: -11.19 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.12 Total: -36.46 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.75 Total: -16.41 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.25 -7.53 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815087654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.658 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds