Wall clock time and date at job start Tue Mar 31 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48494 * 109.47321 * 240.00287 * 3 2 1 5 5 H 1.48501 * 109.46923 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47148 * 120.00003 * 3 2 1 7 7 C 1.37875 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00027 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47071 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99847 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47175 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46981 * 304.99738 * 12 11 10 14 14 O 1.42904 * 109.47200 * 64.99535 * 12 11 10 15 15 C 1.52997 * 109.47533 * 184.99606 * 12 11 10 16 16 O 1.42895 * 109.47541 * 174.99884 * 15 12 11 17 17 C 1.42895 * 114.00313 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47518 * 180.02562 * 17 16 15 19 19 C 1.38219 * 120.00966 * 359.97438 * 18 17 16 20 20 C 1.38227 * 120.02402 * 179.72409 * 19 18 17 21 21 C 1.38263 * 120.05156 * 0.30685 * 20 19 18 22 22 C 1.38177 * 120.02526 * 359.97438 * 21 20 19 23 23 C 1.38439 * 120.01637 * 180.29867 * 18 17 16 24 24 F 1.35105 * 120.02463 * 359.97438 * 23 18 17 25 25 H 0.96999 * 119.99951 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46828 * 60.00339 * 9 7 2 27 27 H 1.09001 * 109.46941 * 300.00365 * 9 7 2 28 28 H 1.00906 * 110.99767 * 303.95265 * 10 9 7 29 29 H 1.08997 * 109.47665 * 59.99747 * 11 10 9 30 30 H 1.09006 * 109.46683 * 299.99361 * 11 10 9 31 31 H 0.96699 * 114.00014 * 60.00415 * 14 12 11 32 32 H 1.09002 * 109.47175 * 54.99675 * 15 12 11 33 33 H 1.09001 * 109.47144 * 295.00124 * 15 12 11 34 34 H 1.08996 * 109.47394 * 59.99621 * 17 16 15 35 35 H 1.09005 * 109.46930 * 299.99874 * 17 16 15 36 36 H 1.08002 * 119.99072 * 0.02562 * 19 18 17 37 37 H 1.07999 * 119.97012 * 180.27779 * 20 19 18 38 38 H 1.08004 * 119.99046 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.01271 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5304 -6.0430 -0.0018 13 1 3.2113 -5.9175 -0.8436 14 8 3.2724 -6.0158 1.2192 15 6 1.8052 -7.3842 -0.1280 16 8 2.7655 -8.4358 -0.2458 17 6 2.1896 -9.7376 -0.3705 18 6 3.2872 -10.7636 -0.4866 19 6 4.6107 -10.3658 -0.4622 20 6 5.6179 -11.3072 -0.5630 21 6 5.3027 -12.6469 -0.6946 22 6 3.9803 -13.0464 -0.7251 23 6 2.9704 -12.1042 -0.6245 24 9 1.6771 -12.4936 -0.6545 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8897 28 1 2.8406 -3.5486 -0.7820 29 1 0.8808 -4.9813 -0.8913 30 1 0.8803 -4.9817 0.8887 31 1 2.7291 -6.1222 2.0121 32 1 1.1696 -7.3717 -1.0135 33 1 1.1913 -7.5502 0.7573 34 1 1.5623 -9.7737 -1.2611 35 1 1.5835 -9.9526 0.5097 36 1 4.8581 -9.3195 -0.3595 37 1 6.6517 -10.9958 -0.5394 38 1 6.0904 -13.3816 -0.7737 39 1 3.7343 -14.0930 -0.8275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819270156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:40 Heat of formation + Delta-G solvation = -121.016675 kcal Electronic energy + Delta-G solvation = -20977.471863 eV Core-core repulsion = 17413.378010 eV Total energy + Delta-G solvation = -3564.093854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.21999 -39.55771 -38.43445 -36.79297 -34.64339 -32.50041 -32.31623 -30.82470 -29.92126 -27.15637 -26.13111 -24.04487 -22.88421 -21.95707 -21.39046 -21.31086 -17.98251 -17.23877 -16.77123 -16.57637 -16.43718 -15.95524 -15.90603 -15.54255 -15.08096 -14.73238 -14.46081 -14.29695 -13.92940 -13.57960 -13.43472 -13.08564 -12.67009 -12.56951 -12.27326 -12.12978 -11.68270 -11.42783 -11.33690 -11.29723 -10.79008 -10.71558 -10.57522 -10.11288 -9.98809 -9.65271 -9.23124 -9.17034 -8.94209 -8.48812 -7.31578 -6.04428 -4.06384 0.79740 0.91248 3.22508 3.26808 3.34171 3.37557 3.41444 3.93970 4.32933 4.42512 4.50111 4.64533 4.67298 4.83423 4.94322 5.02374 5.08790 5.12231 5.14174 5.31258 5.31583 5.39268 5.55428 5.56114 5.72235 5.74097 5.81361 6.04530 6.04782 6.12587 6.30545 6.56585 6.94607 7.18583 7.36772 7.76275 7.95035 8.10142 8.35067 8.57671 9.02676 9.58622 11.06712 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.043295 B = 0.002311 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.564099 B =12112.526904 C =12591.009264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.679 5.679 11 C 0.031 3.969 12 C 0.116 3.884 13 H 0.102 0.898 14 O -0.540 6.540 15 C 0.031 3.969 16 O -0.372 6.372 17 C 0.103 3.897 18 C -0.120 4.120 19 C -0.065 4.065 20 C -0.130 4.130 21 C -0.095 4.095 22 C -0.156 4.156 23 C 0.098 3.902 24 F -0.140 7.140 25 H 0.262 0.738 26 H -0.014 1.014 27 H 0.027 0.973 28 H 0.330 0.670 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.369 0.631 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.274 -26.541 -1.633 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.310 5.310 11 C -0.100 4.100 12 C 0.056 3.944 13 H 0.119 0.881 14 O -0.344 6.344 15 C -0.046 4.046 16 O -0.291 6.291 17 C 0.027 3.973 18 C -0.121 4.121 19 C -0.083 4.083 20 C -0.149 4.149 21 C -0.113 4.113 22 C -0.175 4.175 23 C 0.079 3.921 24 F -0.118 7.118 25 H 0.072 0.928 26 H 0.003 0.997 27 H 0.045 0.955 28 H 0.147 0.853 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.216 0.784 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.165 0.835 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.831 -26.290 -1.354 27.197 hybrid contribution -1.155 0.610 -0.612 1.442 sum 5.676 -25.680 -1.966 26.373 Atomic orbital electron populations 1.69954 1.06103 1.26942 1.50889 1.25001 0.94906 0.99440 0.95297 0.86509 0.79387 0.82485 0.78719 1.20229 1.21362 1.20091 1.21150 0.93576 0.90161 1.50409 0.91889 1.19573 0.90556 0.87422 0.95692 1.60577 1.20793 1.00465 1.49173 1.22488 0.95313 0.91569 1.00595 1.21906 0.93888 0.89656 0.88963 0.88061 1.86619 1.37186 1.95775 1.14851 1.23374 0.91902 0.88437 1.00902 1.87890 1.32857 1.13727 1.94611 1.21051 0.92932 0.82406 1.00931 1.19759 0.96248 0.91868 1.04265 1.21064 0.90591 1.01266 0.95409 1.21319 1.00010 0.92912 1.00616 1.21057 0.95461 0.96416 0.98329 1.21077 0.92494 0.99464 1.04438 1.17447 0.78514 0.92219 1.03898 1.91493 1.34771 1.91642 1.93917 0.92847 0.99666 0.95471 0.85305 0.95498 0.91292 0.78427 0.92314 0.92733 0.91740 0.91709 0.83539 0.85091 0.85047 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.10 5.44 -4.98 -0.03 5.07 16 10 N -0.68 -14.60 6.44 -115.06 -0.74 -15.34 16 11 C 0.03 0.52 5.32 -3.82 -0.02 0.50 16 12 C 0.12 1.64 3.43 -26.73 -0.09 1.55 16 13 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 14 O -0.54 -8.35 13.25 -40.08 -0.53 -8.88 16 15 C 0.03 0.36 5.57 37.16 0.21 0.57 16 16 O -0.37 -4.52 8.79 -40.08 -0.35 -4.87 16 17 C 0.10 1.07 5.91 36.00 0.21 1.29 16 18 C -0.12 -1.26 5.89 -104.56 -0.62 -1.88 16 19 C -0.07 -0.65 9.38 -39.59 -0.37 -1.02 16 20 C -0.13 -1.04 10.04 -39.58 -0.40 -1.44 16 21 C -0.09 -0.67 10.04 -39.59 -0.40 -1.07 16 22 C -0.16 -1.26 10.03 -39.52 -0.40 -1.65 16 23 C 0.10 0.98 7.25 -39.42 -0.29 0.69 16 24 F -0.14 -1.46 16.80 2.25 0.04 -1.43 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.33 6.85 8.72 -39.29 -0.34 6.51 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.37 4.55 9.05 45.56 0.41 4.96 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.15 1.56 7.01 -52.49 -0.37 1.19 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -32.26 340.84 -8.25 -40.51 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.92 Total: 5.22 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -2.60 Total: -10.96 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.00 Total: -41.55 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.88 Total: -13.75 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.26 -8.25 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819270156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.502 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds