Wall clock time and date at job start Tue Mar 31 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48494 * 109.47321 * 240.00287 * 3 2 1 5 5 H 1.48501 * 109.46923 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47148 * 120.00003 * 3 2 1 7 7 C 1.37875 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00027 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47071 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99847 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47175 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46981 * 304.99738 * 12 11 10 14 14 O 1.42904 * 109.47200 * 64.99535 * 12 11 10 15 15 C 1.52997 * 109.47533 * 184.99606 * 12 11 10 16 16 O 1.42895 * 109.47541 * 174.99884 * 15 12 11 17 17 C 1.42895 * 114.00313 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47518 * 180.02562 * 17 16 15 19 19 C 1.38219 * 120.00966 * 359.97438 * 18 17 16 20 20 C 1.38227 * 120.02402 * 179.72409 * 19 18 17 21 21 C 1.38263 * 120.05156 * 0.30685 * 20 19 18 22 22 C 1.38177 * 120.02526 * 359.97438 * 21 20 19 23 23 C 1.38439 * 120.01637 * 180.29867 * 18 17 16 24 24 F 1.35105 * 120.02463 * 359.97438 * 23 18 17 25 25 H 0.96999 * 119.99951 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46828 * 60.00339 * 9 7 2 27 27 H 1.09001 * 109.46941 * 300.00365 * 9 7 2 28 28 H 1.00906 * 110.99767 * 303.95265 * 10 9 7 29 29 H 1.08997 * 109.47665 * 59.99747 * 11 10 9 30 30 H 1.09006 * 109.46683 * 299.99361 * 11 10 9 31 31 H 0.96699 * 114.00014 * 60.00415 * 14 12 11 32 32 H 1.09002 * 109.47175 * 54.99675 * 15 12 11 33 33 H 1.09001 * 109.47144 * 295.00124 * 15 12 11 34 34 H 1.08996 * 109.47394 * 59.99621 * 17 16 15 35 35 H 1.09005 * 109.46930 * 299.99874 * 17 16 15 36 36 H 1.08002 * 119.99072 * 0.02562 * 19 18 17 37 37 H 1.07999 * 119.97012 * 180.27779 * 20 19 18 38 38 H 1.08004 * 119.99046 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.01271 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5304 -6.0430 -0.0018 13 1 3.2113 -5.9175 -0.8436 14 8 3.2724 -6.0158 1.2192 15 6 1.8052 -7.3842 -0.1280 16 8 2.7655 -8.4358 -0.2458 17 6 2.1896 -9.7376 -0.3705 18 6 3.2872 -10.7636 -0.4866 19 6 4.6107 -10.3658 -0.4622 20 6 5.6179 -11.3072 -0.5630 21 6 5.3027 -12.6469 -0.6946 22 6 3.9803 -13.0464 -0.7251 23 6 2.9704 -12.1042 -0.6245 24 9 1.6771 -12.4936 -0.6545 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8897 28 1 2.8406 -3.5486 -0.7820 29 1 0.8808 -4.9813 -0.8913 30 1 0.8803 -4.9817 0.8887 31 1 2.7291 -6.1222 2.0121 32 1 1.1696 -7.3717 -1.0135 33 1 1.1913 -7.5502 0.7573 34 1 1.5623 -9.7737 -1.2611 35 1 1.5835 -9.9526 0.5097 36 1 4.8581 -9.3195 -0.3595 37 1 6.6517 -10.9958 -0.5394 38 1 6.0904 -13.3816 -0.7737 39 1 3.7343 -14.0930 -0.8275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819270156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:39 Heat of formation + Delta-G solvation = -144.349326 kcal Electronic energy + Delta-G solvation = -20978.483643 eV Core-core repulsion = 17413.378010 eV Total energy + Delta-G solvation = -3565.105633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.96102 -40.29804 -39.42743 -37.92706 -36.35531 -34.43017 -33.15799 -31.47031 -31.26009 -28.76419 -27.15027 -25.50031 -23.67034 -23.26523 -22.80067 -22.37691 -18.78461 -18.65049 -17.93395 -17.70724 -17.40149 -17.00269 -16.79736 -16.64325 -16.35752 -16.15963 -15.60631 -15.40407 -15.05708 -14.77329 -14.58379 -14.15418 -14.04895 -13.67087 -13.45405 -13.25505 -13.00085 -12.87904 -12.66809 -12.58090 -12.37520 -12.07210 -11.97482 -11.77289 -11.42886 -10.89848 -10.79508 -10.66011 -9.89882 -9.62032 -9.11247 -8.23778 -6.34865 0.13598 0.25893 1.41328 1.44989 1.53008 2.29921 2.41549 2.62330 3.09509 3.25592 3.42215 3.60591 3.73827 3.88633 3.98778 4.06792 4.10853 4.17309 4.28821 4.31783 4.40002 4.44927 4.48023 4.51832 4.69014 4.92637 5.04010 5.07921 5.10451 5.18359 5.24107 5.37189 5.48985 5.59718 5.93167 5.99571 6.09677 6.41166 6.67749 6.84676 6.93963 7.36040 8.87489 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.043295 B = 0.002311 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.564099 B =12112.526904 C =12591.009264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.683 5.683 11 C 0.032 3.968 12 C 0.127 3.873 13 H 0.095 0.905 14 O -0.559 6.559 15 C 0.037 3.963 16 O -0.386 6.386 17 C 0.103 3.897 18 C -0.138 4.138 19 C -0.084 4.084 20 C -0.130 4.130 21 C -0.089 4.089 22 C -0.155 4.155 23 C 0.079 3.921 24 F -0.147 7.147 25 H 0.266 0.734 26 H -0.037 1.037 27 H 0.002 0.998 28 H 0.334 0.666 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.382 0.618 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 -27.609 -1.771 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.314 5.314 11 C -0.098 4.098 12 C 0.067 3.933 13 H 0.113 0.887 14 O -0.365 6.365 15 C -0.040 4.040 16 O -0.305 6.305 17 C 0.026 3.974 18 C -0.139 4.139 19 C -0.102 4.102 20 C -0.148 4.148 21 C -0.107 4.107 22 C -0.174 4.174 23 C 0.060 3.940 24 F -0.126 7.126 25 H 0.074 0.926 26 H -0.019 1.019 27 H 0.020 0.980 28 H 0.151 0.849 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.230 0.770 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.152 0.848 37 H 0.169 0.831 38 H 0.182 0.818 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.184 -27.387 -1.489 28.623 hybrid contribution -1.554 0.842 -0.560 1.854 sum 6.630 -26.545 -2.049 27.437 Atomic orbital electron populations 1.70075 1.07738 1.28122 1.51417 1.25959 0.95839 1.03407 0.94531 0.85370 0.78105 0.77565 0.79171 1.19080 1.20682 1.19397 1.21521 0.93803 0.91531 1.50789 0.91910 1.19218 0.90560 0.88810 0.93315 1.60442 1.20235 1.01212 1.49499 1.22561 0.95985 0.90191 1.01058 1.21710 0.92946 0.90154 0.88466 0.88714 1.86581 1.38265 1.95875 1.15788 1.23225 0.91491 0.86977 1.02288 1.87861 1.33414 1.14447 1.94771 1.21122 0.93207 0.81616 1.01415 1.19852 0.96484 0.92237 1.05316 1.21073 0.91082 1.01194 0.96815 1.21612 1.00562 0.93117 0.99510 1.21444 0.95900 0.96642 0.96682 1.21417 0.92479 1.00206 1.03272 1.17665 0.78702 0.92489 1.05107 1.91468 1.35355 1.91664 1.94126 0.92556 1.01949 0.98030 0.84859 0.94714 0.91012 0.76971 0.91056 0.91183 0.91235 0.91178 0.84846 0.83075 0.81799 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -31.14 9.32 25.60 0.24 -30.90 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.24 5.44 85.56 0.47 11.70 16 10 N -0.68 -29.63 6.44 -517.92 -3.34 -32.96 16 11 C 0.03 1.07 5.32 86.30 0.46 1.53 16 12 C 0.13 3.52 3.43 30.59 0.10 3.63 16 13 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 14 O -0.56 -16.95 13.25 -144.34 -1.91 -18.86 16 15 C 0.04 0.82 5.57 71.98 0.40 1.22 16 16 O -0.39 -9.17 8.79 -144.34 -1.27 -10.44 16 17 C 0.10 2.09 5.91 71.24 0.42 2.51 16 18 C -0.14 -2.84 5.89 -19.82 -0.12 -2.96 16 19 C -0.08 -1.63 9.38 22.26 0.21 -1.42 16 20 C -0.13 -1.85 10.04 22.27 0.22 -1.63 16 21 C -0.09 -1.03 10.04 22.26 0.22 -0.80 16 22 C -0.16 -2.19 10.03 22.31 0.22 -1.96 16 23 C 0.08 1.52 7.25 22.38 0.16 1.68 16 24 F -0.15 -3.02 16.80 44.97 0.76 -2.26 16 25 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 26 H -0.04 -2.12 8.14 -2.39 -0.02 -2.14 16 27 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.33 13.97 8.72 -89.69 -0.78 13.19 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.38 9.13 9.05 -74.06 -0.67 8.46 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.13 2.89 7.01 -2.91 -0.02 2.87 16 37 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -69.32 340.84 -0.36 -69.68 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.39 Total: 21.34 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 3.48 Total: -16.89 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -3.05 Total: -89.21 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -3.18 Total: -29.30 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.76 Total: -2.26 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -69.32 -0.36 -69.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819270156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.668 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds