Wall clock time and date at job start Tue Mar 31 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38279 * 119.92625 * 2 1 4 4 C 1.38108 * 120.06802 * 179.97438 * 3 2 1 5 5 C 1.38896 * 119.92911 * 0.23201 * 4 3 2 6 6 N 1.39829 * 120.06998 * 179.74528 * 5 4 3 7 7 C 1.46501 * 119.99982 * 57.30429 * 6 5 4 8 8 C 1.50707 * 109.47010 * 90.00093 * 7 6 5 9 9 H 1.07992 * 120.00173 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99848 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99706 * 359.97438 * 10 8 7 12 12 Si 1.86790 * 119.99899 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47102 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47276 * 119.99658 * 12 10 8 15 15 H 1.48501 * 109.47342 * 239.99870 * 12 10 8 16 16 C 1.34775 * 120.00089 * 237.29659 * 6 5 4 17 17 O 1.21632 * 119.99818 * 5.70459 * 16 6 5 18 18 C 1.43202 * 120.00545 * 185.69949 * 16 6 5 19 19 C 7.53003 * 170.74957 * 227.31257 * 2 1 3 20 20 C 8.98562 * 172.03122 * 221.76978 * 2 1 3 21 21 C 1.53005 * 117.50095 * 261.71324 * 20 19 18 22 22 C 1.52998 * 117.49791 * 193.05478 * 20 19 18 23 23 C 1.38894 * 119.85003 * 359.51404 * 5 4 3 24 24 C 1.38102 * 119.93079 * 0.48592 * 23 5 4 25 25 H 1.09008 * 109.46651 * 90.00406 * 1 2 3 26 26 H 1.08996 * 109.47246 * 209.99908 * 1 2 3 27 27 H 1.08999 * 109.47221 * 330.00936 * 1 2 3 28 28 H 1.07994 * 119.96852 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.03283 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47260 * 209.99479 * 7 6 5 31 31 H 1.08993 * 109.47326 * 329.99923 * 7 6 5 32 32 H 0.97001 * 119.99353 * 180.02562 * 11 10 8 33 33 H 1.09002 * 115.55428 * 47.38946 * 20 19 18 34 34 H 1.09003 * 117.49240 * 0.02562 * 21 20 19 35 35 H 1.08995 * 117.49717 * 145.02102 * 21 20 19 36 36 H 1.09000 * 117.50211 * 214.98238 * 22 20 19 37 37 H 1.09003 * 117.50110 * 359.97438 * 22 20 19 38 38 H 1.08005 * 120.02884 * 180.21124 * 23 5 4 39 39 H 1.08000 * 119.96761 * 179.74819 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2739 -0.0002 -0.0038 6 7 5.6722 -0.0001 -0.0087 7 6 6.4084 0.6835 1.0576 8 6 6.6636 -0.2791 2.1888 9 1 6.3121 -1.2979 2.1205 10 6 7.3448 0.1415 3.3114 11 7 7.7723 1.3824 3.3947 12 14 7.6604 -1.0514 4.7138 13 1 7.0813 -2.3765 4.3763 14 1 9.1236 -1.1897 4.9262 15 1 7.0267 -0.5362 5.9540 16 6 6.3427 -0.6292 -0.9941 17 8 5.7358 -1.1073 -1.9336 18 6 7.7697 -0.7346 -0.9354 19 6 8.9391 -0.8207 -0.8898 20 6 10.4059 -0.9291 -0.8298 21 6 11.0698 -0.7820 0.5408 22 6 11.1948 0.3383 -0.4947 23 6 3.5779 -1.2021 0.0016 24 6 2.1968 -1.1985 0.0010 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6552 2.1327 -0.0004 29 1 4.1162 2.1382 0.0001 30 1 7.3596 1.0461 0.6677 31 1 5.8207 1.5256 1.4227 32 1 8.2519 1.6781 4.1844 33 1 10.8548 -1.6298 -1.5338 34 1 10.4203 -0.6054 1.3982 35 1 11.9555 -1.3858 0.7384 36 1 12.1628 0.4712 -0.9780 37 1 10.6277 1.2525 -0.3191 38 1 4.1161 -2.1384 0.0017 39 1 1.6550 -2.1328 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837373398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:36 Heat of formation + Delta-G solvation = 66.138271 kcal Electronic energy + Delta-G solvation = -21248.205334 eV Core-core repulsion = 18122.996352 eV Total energy + Delta-G solvation = -3125.208981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95425 -38.14696 -37.24672 -35.26435 -32.91036 -32.27541 -31.15517 -30.55964 -27.54488 -26.36957 -24.23241 -23.24340 -22.20267 -22.04823 -21.84132 -20.04263 -17.58108 -16.81198 -16.52243 -16.03638 -15.19485 -15.02074 -14.86436 -14.48796 -14.16034 -13.84218 -13.53627 -13.11511 -13.02153 -12.49724 -12.28088 -12.10191 -11.72808 -11.60059 -11.55394 -11.31402 -11.27282 -11.05061 -10.92912 -10.83391 -10.70547 -10.28466 -9.88939 -9.78932 -9.54410 -9.30807 -8.68459 -8.60346 -8.50518 -7.50350 -6.21854 -4.28150 1.62811 1.83723 2.15372 2.85163 3.18721 3.27452 3.32895 3.73116 3.77340 4.15347 4.30231 4.47822 4.53477 4.99492 5.11854 5.16308 5.17540 5.20563 5.28216 5.39446 5.56993 5.72448 5.75779 5.81215 5.81343 5.89897 6.05215 6.08144 6.12202 6.26310 6.41227 6.42905 6.60237 6.80346 6.90838 6.94186 7.10576 7.23303 7.58080 7.71800 7.84617 7.97696 8.03406 8.67580 8.82022 9.38033 10.85381 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.005721 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.610800 B = 4893.090610 C = 6214.038064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C -0.109 4.109 4 C -0.122 4.122 5 C 0.172 3.828 6 N -0.545 5.545 7 C 0.238 3.762 8 C -0.532 4.532 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.636 3.364 17 O -0.543 6.543 18 C -0.186 4.186 19 C -0.066 4.066 20 C -0.059 4.059 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.106 4.106 24 C -0.109 4.109 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.265 0.735 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -1.011 -5.213 5.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 C -0.128 4.128 4 C -0.142 4.142 5 C 0.081 3.919 6 N -0.270 5.270 7 C 0.120 3.880 8 C -0.570 4.570 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.529 5.529 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.427 3.573 17 O -0.423 6.423 18 C -0.189 4.189 19 C -0.069 4.069 20 C -0.077 4.077 21 C -0.195 4.195 22 C -0.197 4.197 23 C -0.126 4.126 24 C -0.128 4.128 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.514 -1.104 -5.553 6.195 hybrid contribution 0.395 -0.582 1.036 1.252 sum -2.119 -1.686 -4.517 5.266 Atomic orbital electron populations 1.20708 0.91598 1.02308 1.01764 1.19793 0.95700 0.93218 1.02120 1.20750 0.93335 0.97331 1.01361 1.21099 0.94202 0.97268 1.01640 1.17540 0.82703 0.93323 0.98362 1.45761 1.03685 1.52108 1.25476 1.19629 0.91800 0.92888 0.83657 1.21424 1.36683 0.97583 1.01351 0.92031 1.24879 0.95182 0.95314 0.98180 1.69933 1.37910 1.15694 1.29354 0.86479 0.78109 0.81291 0.81932 1.19609 1.20653 1.20750 1.14735 0.82813 0.77979 0.81821 1.90786 1.68991 1.48746 1.33737 1.20195 0.92078 1.04260 1.02350 1.21052 0.91870 0.95553 0.98399 1.18753 0.84156 1.03048 1.01709 1.23142 1.02196 1.01422 0.92772 1.23055 1.00780 0.93143 1.02717 1.21124 0.94115 0.97445 0.99930 1.20779 0.93404 0.97347 1.01249 0.91695 0.91920 0.91892 0.86148 0.85791 0.93975 0.93834 0.92542 0.85552 0.87069 0.88047 0.88012 0.87932 0.86210 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.11 -1.62 5.88 -104.59 -0.62 -2.23 16 3 C -0.11 -1.71 9.69 -39.61 -0.38 -2.10 16 4 C -0.12 -2.27 9.32 -39.39 -0.37 -2.64 16 5 C 0.17 3.65 5.13 -83.72 -0.43 3.22 16 6 N -0.55 -12.54 2.56 -117.44 -0.30 -12.84 16 7 C 0.24 5.93 4.83 -5.19 -0.03 5.90 16 8 C -0.53 -14.23 9.36 -34.43 -0.32 -14.55 16 9 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 12 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.64 14.87 7.31 -14.33 -0.10 14.76 16 17 O -0.54 -13.31 16.50 5.25 0.09 -13.23 16 18 C -0.19 -4.12 11.75 -38.84 -0.46 -4.57 16 19 C -0.07 -1.29 13.47 -37.13 -0.50 -1.79 16 20 C -0.06 -0.87 6.21 -93.41 -0.58 -1.45 16 21 C -0.16 -2.26 10.21 -26.69 -0.27 -2.53 16 22 C -0.16 -2.11 10.21 -26.69 -0.27 -2.38 16 23 C -0.11 -2.09 9.00 -39.39 -0.35 -2.45 16 24 C -0.11 -1.78 9.69 -39.61 -0.38 -2.16 16 25 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 26 H 0.06 0.62 8.08 -51.93 -0.42 0.21 16 27 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.12 2.20 7.85 -52.48 -0.41 1.79 16 30 H 0.04 1.09 7.02 -51.93 -0.36 0.73 16 31 H 0.04 1.12 7.38 -51.93 -0.38 0.73 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 33 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 39 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -30.44 348.31 -9.40 -39.84 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.35 Total: 3.04 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -4.81 Total: -14.10 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.44 Total: -36.49 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.44 -9.40 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837373398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.979 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds