Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46785 * 2 1 4 4 C 1.50702 * 109.47110 * 240.00321 * 2 1 3 5 5 H 1.07999 * 119.99607 * 240.00282 * 4 2 1 6 6 C 1.37874 * 120.00121 * 59.99587 * 4 2 1 7 7 N 1.31514 * 120.00097 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47199 * 90.00146 * 8 6 4 10 10 H 1.48508 * 109.46940 * 210.00372 * 8 6 4 11 11 H 1.48495 * 109.47274 * 329.99786 * 8 6 4 12 12 C 1.52994 * 109.47143 * 120.00167 * 2 1 3 13 13 N 1.46498 * 109.47120 * 299.99958 * 12 2 1 14 14 C 1.34778 * 119.99841 * 180.02562 * 13 12 2 15 15 O 1.21613 * 120.00119 * 0.02562 * 14 13 12 16 16 C 1.47109 * 119.99667 * 180.27756 * 14 13 12 17 17 C 1.32999 * 119.99801 * 187.78537 * 16 14 13 18 18 C 1.50660 * 119.83483 * 16.38552 * 17 16 14 19 19 C 1.53690 * 109.15543 * 117.48359 * 18 17 16 20 20 S 1.81621 * 108.98055 * 57.97881 * 19 18 17 21 21 C 1.81622 * 102.56327 * 303.38400 * 20 19 18 22 22 C 1.50646 * 119.83963 * 196.65191 * 17 16 14 23 23 H 1.09000 * 109.47023 * 299.99857 * 1 2 3 24 24 H 1.08994 * 109.47259 * 60.00118 * 1 2 3 25 25 H 1.09001 * 109.46690 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47057 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47126 * 299.99963 * 3 2 1 28 28 H 1.09000 * 109.47223 * 60.00265 * 3 2 1 29 29 H 0.96998 * 120.00423 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46980 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.47267 * 60.00427 * 12 2 1 32 32 H 0.96994 * 120.00422 * 0.02562 * 13 12 2 33 33 H 1.08000 * 120.00362 * 7.78497 * 16 14 13 34 34 H 1.08999 * 109.47420 * 237.48212 * 18 17 16 35 35 H 1.08999 * 109.48223 * 357.51057 * 18 17 16 36 36 H 1.09002 * 109.67079 * 298.07056 * 19 18 17 37 37 H 1.09001 * 109.54801 * 177.81509 * 19 18 17 38 38 H 1.09001 * 109.54431 * 296.63213 * 21 20 19 39 39 H 1.08999 * 109.62154 * 176.40070 * 21 20 19 40 40 H 1.09004 * 109.48111 * 2.49677 * 22 17 16 41 41 H 1.09002 * 109.47742 * 122.50829 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8778 -0.4909 3.6694 15 8 2.5777 -1.4791 3.7810 16 6 1.3824 0.1990 4.8706 17 6 1.8260 -0.1574 6.0726 18 6 3.0787 -0.9856 6.1941 19 6 4.1418 -0.1828 6.9603 20 16 3.4803 0.2680 8.5906 21 6 1.9604 1.1666 8.1655 22 6 1.0703 0.2640 7.3058 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7094 1.1619 -3.4843 30 1 3.1300 -0.7208 1.2494 31 1 1.6768 -1.7490 1.2491 32 1 0.9938 0.7577 2.3564 33 1 0.6584 0.9949 4.7763 34 1 2.8551 -1.9057 6.7340 35 1 3.4512 -1.2293 5.1991 36 1 4.3897 0.7216 6.4047 37 1 5.0378 -0.7907 7.0857 38 1 2.2136 2.0677 7.6069 39 1 1.4296 1.4401 9.0775 40 1 0.1733 0.8101 7.0136 41 1 0.7876 -0.6194 7.8784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837888402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = -28.948071 kcal Electronic energy + Delta-G solvation = -20287.861163 eV Core-core repulsion = 17293.972879 eV Total energy + Delta-G solvation = -2993.888283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.74408 -37.23450 -36.10006 -33.38375 -31.89560 -31.19103 -30.31637 -26.08525 -25.76638 -25.29457 -24.00479 -23.57562 -20.76733 -19.24826 -18.58617 -17.07176 -16.58907 -15.80776 -15.33672 -15.09843 -14.75221 -14.63865 -14.32960 -14.05058 -13.66020 -13.39847 -13.23285 -12.94064 -12.69605 -12.34808 -12.17762 -11.96496 -11.50727 -11.36459 -11.22914 -11.02309 -10.88662 -10.70643 -10.42485 -10.22902 -10.05907 -9.67594 -9.41609 -9.32755 -8.96195 -8.81039 -8.46859 -8.32012 -7.86265 -6.05246 -4.15533 1.25263 1.56597 2.32851 3.26252 3.33372 3.37009 3.50372 3.72344 4.37162 4.44522 4.56496 4.70906 4.91444 4.94332 5.07614 5.15281 5.21634 5.30658 5.40028 5.49815 5.59818 5.81364 6.01238 6.19411 6.28140 6.36288 6.46553 6.54892 6.76906 6.78379 6.89992 6.97675 7.03064 7.31744 7.51747 7.66227 7.97207 8.01074 8.11740 8.34937 8.65118 8.85300 9.50575 10.96201 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.041219 B = 0.003136 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.130914 B = 8926.236960 C = 9192.985817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.708 5.708 14 C 0.536 3.464 15 O -0.548 6.548 16 C -0.207 4.207 17 C -0.051 4.051 18 C -0.132 4.132 19 C -0.070 4.070 20 S -0.279 6.279 21 C -0.077 4.077 22 C -0.090 4.090 23 H 0.006 0.994 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.399 0.601 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 2.498 17.846 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.356 5.356 14 C 0.324 3.676 15 O -0.430 6.430 16 C -0.228 4.228 17 C -0.053 4.053 18 C -0.170 4.170 19 C -0.218 4.218 20 S -0.053 6.053 21 C -0.226 4.226 22 C -0.129 4.129 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.234 0.766 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.162 0.838 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.646 1.727 18.734 18.825 hybrid contribution -0.573 0.338 -2.041 2.147 sum 0.074 2.065 16.693 16.821 Atomic orbital electron populations 1.21836 0.97764 0.99199 1.00091 1.18356 0.92792 0.92761 0.90583 1.21831 0.98589 0.98349 1.00089 1.20987 1.31544 1.12121 0.89898 0.92417 1.24880 0.94844 0.94899 0.98877 1.69799 1.36697 1.22706 1.23266 0.86568 0.79341 0.79395 0.82556 1.20694 1.21251 1.19878 1.21749 0.98179 0.95867 0.83430 1.46288 1.51999 1.31287 1.06049 1.18531 0.80463 0.84585 0.83975 1.90493 1.39204 1.27442 1.85909 1.22597 1.05180 1.02385 0.92631 1.22351 0.94588 0.94462 0.93927 1.21924 0.91533 0.97150 1.06345 1.23579 1.01100 1.03319 0.93758 1.86756 1.29411 1.73348 1.15747 1.23388 0.95690 0.99980 1.03519 1.20994 0.97367 1.00396 0.94115 0.97518 0.89570 0.95427 0.95436 0.89573 0.97523 0.92980 0.92593 0.92588 0.76579 0.85550 0.89988 0.83784 0.89929 0.87391 0.89672 0.87481 0.89752 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.13 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.39 9.35 55.43 0.52 -22.87 16 8 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 C 0.13 2.70 4.50 -4.05 -0.02 2.68 16 13 N -0.71 -12.20 4.95 -61.49 -0.30 -12.51 16 14 C 0.54 8.88 7.58 -12.66 -0.10 8.78 16 15 O -0.55 -10.55 13.23 5.27 0.07 -10.48 16 16 C -0.21 -2.61 9.56 -37.80 -0.36 -2.97 16 17 C -0.05 -0.59 5.06 -101.21 -0.51 -1.10 16 18 C -0.13 -1.63 5.38 -27.54 -0.15 -1.78 16 19 C -0.07 -0.75 6.50 37.52 0.24 -0.50 16 20 S -0.28 -2.94 22.23 -107.50 -2.39 -5.33 16 21 C -0.08 -0.64 6.48 37.24 0.24 -0.40 16 22 C -0.09 -0.78 5.87 -27.82 -0.16 -0.94 16 23 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 24 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.40 6.23 6.15 -40.82 -0.25 5.97 16 33 H 0.13 1.28 7.96 -52.49 -0.42 0.86 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.15 2.20 4.38 -54.45 -0.24 1.96 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.60 7.86 -51.93 -0.41 0.19 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -27.53 331.06 -9.23 -36.76 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.43 Total: 5.94 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.66 Total: -12.02 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.21 Total: -35.38 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.39 Total: -5.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.53 -9.23 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.809 kcal (2) G-P(sol) polarization free energy of solvation -27.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds