Wall clock time and date at job start Tue Mar 31 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46785 * 2 1 4 4 C 1.50702 * 109.47110 * 240.00321 * 2 1 3 5 5 H 1.07999 * 119.99607 * 240.00282 * 4 2 1 6 6 C 1.37874 * 120.00121 * 59.99587 * 4 2 1 7 7 N 1.31514 * 120.00097 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47199 * 90.00146 * 8 6 4 10 10 H 1.48508 * 109.46940 * 210.00372 * 8 6 4 11 11 H 1.48495 * 109.47274 * 329.99786 * 8 6 4 12 12 C 1.52994 * 109.47143 * 120.00167 * 2 1 3 13 13 N 1.46498 * 109.47120 * 299.99958 * 12 2 1 14 14 C 1.34778 * 119.99841 * 180.02562 * 13 12 2 15 15 O 1.21613 * 120.00119 * 0.02562 * 14 13 12 16 16 C 1.47109 * 119.99667 * 180.27756 * 14 13 12 17 17 C 1.32999 * 119.99801 * 187.78537 * 16 14 13 18 18 C 1.50660 * 119.83483 * 16.38552 * 17 16 14 19 19 C 1.53690 * 109.15543 * 117.48359 * 18 17 16 20 20 S 1.81621 * 108.98055 * 57.97881 * 19 18 17 21 21 C 1.81622 * 102.56327 * 303.38400 * 20 19 18 22 22 C 1.50646 * 119.83963 * 196.65191 * 17 16 14 23 23 H 1.09000 * 109.47023 * 299.99857 * 1 2 3 24 24 H 1.08994 * 109.47259 * 60.00118 * 1 2 3 25 25 H 1.09001 * 109.46690 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47057 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47126 * 299.99963 * 3 2 1 28 28 H 1.09000 * 109.47223 * 60.00265 * 3 2 1 29 29 H 0.96998 * 120.00423 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46980 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.47267 * 60.00427 * 12 2 1 32 32 H 0.96994 * 120.00422 * 0.02562 * 13 12 2 33 33 H 1.08000 * 120.00362 * 7.78497 * 16 14 13 34 34 H 1.08999 * 109.47420 * 237.48212 * 18 17 16 35 35 H 1.08999 * 109.48223 * 357.51057 * 18 17 16 36 36 H 1.09002 * 109.67079 * 298.07056 * 19 18 17 37 37 H 1.09001 * 109.54801 * 177.81509 * 19 18 17 38 38 H 1.09001 * 109.54431 * 296.63213 * 21 20 19 39 39 H 1.08999 * 109.62154 * 176.40070 * 21 20 19 40 40 H 1.09004 * 109.48111 * 2.49677 * 22 17 16 41 41 H 1.09002 * 109.47742 * 122.50829 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8778 -0.4909 3.6694 15 8 2.5777 -1.4791 3.7810 16 6 1.3824 0.1990 4.8706 17 6 1.8260 -0.1574 6.0726 18 6 3.0787 -0.9856 6.1941 19 6 4.1418 -0.1828 6.9603 20 16 3.4803 0.2680 8.5906 21 6 1.9604 1.1666 8.1655 22 6 1.0703 0.2640 7.3058 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7094 1.1619 -3.4843 30 1 3.1300 -0.7208 1.2494 31 1 1.6768 -1.7490 1.2491 32 1 0.9938 0.7577 2.3564 33 1 0.6584 0.9949 4.7763 34 1 2.8551 -1.9057 6.7340 35 1 3.4512 -1.2293 5.1991 36 1 4.3897 0.7216 6.4047 37 1 5.0378 -0.7907 7.0857 38 1 2.2136 2.0677 7.6069 39 1 1.4296 1.4401 9.0775 40 1 0.1733 0.8101 7.0136 41 1 0.7876 -0.6194 7.8784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837888402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:35 Heat of formation + Delta-G solvation = -43.472726 kcal Electronic energy + Delta-G solvation = -20288.490999 eV Core-core repulsion = 17293.972879 eV Total energy + Delta-G solvation = -2994.518120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04039 -38.57920 -37.43496 -35.02243 -32.91128 -32.65925 -31.42845 -27.61809 -27.57132 -27.08629 -25.16971 -24.42006 -22.03425 -20.71168 -19.95314 -18.33163 -17.68710 -17.49986 -16.69323 -16.46613 -16.19845 -15.75525 -15.35976 -15.11616 -14.79233 -14.69992 -14.50739 -14.25511 -14.02682 -13.86162 -13.24137 -13.17415 -13.08829 -12.75501 -12.68379 -12.60227 -12.31233 -12.23503 -12.14919 -11.91034 -11.49013 -11.22253 -10.88972 -10.71896 -10.48514 -10.39067 -10.01928 -9.79566 -8.69006 -8.03350 -6.19205 0.24811 0.79934 1.41752 1.44808 1.52817 1.56369 2.27993 2.36057 2.52182 3.20327 3.63589 3.72236 3.93630 4.04000 4.14336 4.17680 4.35434 4.42809 4.47772 4.51163 4.66356 4.71326 4.79357 4.87786 4.94156 4.97945 5.05087 5.06851 5.13203 5.18765 5.36194 5.42725 5.56472 5.66421 5.66506 5.72148 6.14548 6.21133 6.42755 6.71146 6.85355 7.35368 7.48761 8.95512 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.041219 B = 0.003136 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.130914 B = 8926.236960 C = 9192.985817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.148 3.852 13 N -0.705 5.705 14 C 0.531 3.469 15 O -0.581 6.581 16 C -0.217 4.217 17 C -0.038 4.038 18 C -0.134 4.134 19 C -0.063 4.063 20 S -0.303 6.303 21 C -0.069 4.069 22 C -0.086 4.086 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.260 0.740 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.409 0.591 33 H 0.160 0.840 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 3.658 19.605 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.355 5.355 14 C 0.322 3.678 15 O -0.466 6.466 16 C -0.238 4.238 17 C -0.041 4.041 18 C -0.172 4.172 19 C -0.212 4.212 20 S -0.077 6.077 21 C -0.217 4.217 22 C -0.124 4.124 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.246 0.754 33 H 0.177 0.823 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.418 2.904 20.508 20.717 hybrid contribution -0.209 -0.058 -2.503 2.513 sum -0.627 2.846 18.005 18.239 Atomic orbital electron populations 1.21675 0.97118 0.98643 1.00447 1.18350 0.93244 0.93018 0.90323 1.21667 0.97877 0.97864 1.00416 1.21296 1.31752 1.12185 0.91666 0.93769 1.25445 0.95143 0.95574 1.00960 1.69902 1.37026 1.23237 1.23622 0.85772 0.78676 0.78512 0.79932 1.20491 1.20806 1.20075 1.21256 0.96974 0.95071 0.84321 1.46099 1.52469 1.31550 1.05336 1.19234 0.79557 0.84325 0.84675 1.90514 1.40548 1.29078 1.86462 1.22558 1.06698 1.03783 0.90720 1.22645 0.93610 0.92745 0.95070 1.21805 0.92785 0.97768 1.04816 1.23467 1.00778 1.03054 0.93856 1.86874 1.31487 1.73878 1.15458 1.23494 0.94068 0.99515 1.04615 1.21055 0.97801 1.01065 0.92491 0.94317 0.91917 0.96382 0.96382 0.91929 0.94363 0.93012 0.94333 0.94378 0.75379 0.82251 0.90272 0.86693 0.90007 0.87080 0.88965 0.85128 0.87027 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 4 C -0.53 -27.96 8.01 25.60 0.21 -27.75 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.50 5.15 84.65 0.44 1.93 16 7 N -0.90 -47.66 9.35 21.45 0.20 -47.46 16 8 Si 0.94 42.42 29.54 68.60 2.03 44.45 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.15 6.19 4.50 86.38 0.39 6.58 16 13 N -0.70 -23.57 4.95 -466.72 -2.31 -25.88 16 14 C 0.53 17.15 7.58 86.57 0.66 17.81 16 15 O -0.58 -22.75 13.23 -4.07 -0.05 -22.80 16 16 C -0.22 -4.90 9.56 23.43 0.22 -4.68 16 17 C -0.04 -0.79 5.06 -17.64 -0.09 -0.88 16 18 C -0.13 -3.22 5.38 30.07 0.16 -3.06 16 19 C -0.06 -1.31 6.50 72.21 0.47 -0.84 16 20 S -0.30 -5.78 22.23 -56.49 -1.26 -7.03 16 21 C -0.07 -0.88 6.48 72.04 0.47 -0.41 16 22 C -0.09 -1.14 5.87 29.89 0.18 -0.96 16 23 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 24 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 25 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 28 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 29 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.41 11.80 6.15 -92.71 -0.57 11.23 16 33 H 0.16 2.52 7.96 -2.91 -0.02 2.50 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.12 3.58 4.38 -42.30 -0.19 3.39 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 0.98 7.86 -2.39 -0.02 0.96 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -60.35 331.06 3.11 -57.25 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.27 Total: 20.83 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.23 Total: -19.35 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -2.11 Total: -73.34 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.26 Total: -7.03 kcal Total: -60.35 3.11 -57.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.773 kcal (2) G-P(sol) polarization free energy of solvation -60.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds