Wall clock time and date at job start Tue Mar 31 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47150 * 138.82452 * 3 2 1 5 5 C 1.37108 * 120.00054 * 274.97005 * 4 3 2 6 6 H 1.08000 * 120.00101 * 192.77156 * 5 4 3 7 7 C 1.38948 * 119.99438 * 12.76978 * 5 4 3 8 8 N 1.31403 * 120.00572 * 358.59939 * 7 5 4 9 9 Si 1.86803 * 119.99290 * 178.60034 * 7 5 4 10 10 H 1.48504 * 109.47307 * 90.00329 * 9 7 5 11 11 H 1.48501 * 109.47174 * 209.99830 * 9 7 5 12 12 H 1.48499 * 109.47543 * 330.00020 * 9 7 5 13 13 C 1.34780 * 120.00481 * 94.96796 * 4 3 2 14 14 O 1.21286 * 120.00298 * 185.20495 * 13 4 3 15 15 C 1.50704 * 119.99214 * 5.19995 * 13 4 3 16 16 C 1.52993 * 110.27272 * 298.73978 * 15 13 4 17 17 C 1.54347 * 110.30341 * 60.92171 * 15 13 4 18 18 C 1.54340 * 102.39202 * 145.26475 * 17 15 13 19 19 C 1.51366 * 105.17180 * 333.65134 * 18 17 15 20 20 C 1.38501 * 130.39108 * 197.16797 * 19 18 17 21 21 C 1.38111 * 120.21491 * 180.02562 * 20 19 18 22 22 C 1.38252 * 119.93430 * 0.02562 * 21 20 19 23 23 C 1.38099 * 119.93379 * 359.97438 * 22 21 20 24 24 C 1.38215 * 109.75982 * 17.19106 * 19 18 17 25 25 H 4.40639 * 5.51380 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47051 * 258.82161 * 3 2 1 27 27 H 1.09000 * 109.47132 * 18.82175 * 3 2 1 28 28 H 0.96997 * 120.00212 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47473 * 68.26573 * 16 15 13 30 30 H 1.09003 * 109.47346 * 188.27190 * 16 15 13 31 31 H 1.09005 * 109.46805 * 308.26763 * 16 15 13 32 32 H 1.08997 * 110.82298 * 263.49136 * 17 15 13 33 33 H 1.09003 * 110.82291 * 27.04026 * 17 15 13 34 34 H 1.08999 * 110.30648 * 214.72826 * 18 17 15 35 35 H 1.08997 * 110.38777 * 92.61895 * 18 17 15 36 36 H 1.07994 * 119.88994 * 0.05310 * 20 19 18 37 37 H 1.07994 * 120.02782 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.03357 * 180.02562 * 22 21 20 39 39 H 1.08002 * 119.88935 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0405 -0.9093 5 6 3.2655 0.7741 -2.2478 6 1 3.8118 1.4557 -2.8829 7 6 2.6961 -0.3730 -2.7870 8 7 2.0550 -1.2163 -2.0095 9 14 2.8420 -0.7161 -4.6175 10 1 4.0730 -1.5052 -4.8767 11 1 1.6561 -1.4851 -5.0730 12 1 2.9129 0.5691 -5.3580 13 6 3.4533 2.2591 -0.4303 14 8 3.7666 3.1479 -1.1938 15 6 3.4210 2.5173 1.0541 16 6 2.0067 2.3061 1.5983 17 6 4.4202 1.5920 1.7805 18 6 4.9242 2.4877 2.9320 19 6 4.7579 3.9067 2.4319 20 6 5.3178 5.0895 2.8855 21 6 5.0158 6.2849 2.2632 22 6 4.1514 6.3020 1.1844 23 6 3.5922 5.1236 0.7307 24 6 3.8942 3.9237 1.3530 25 1 -1.0501 -0.0004 0.0001 26 1 3.0092 0.2001 1.0082 27 1 3.0098 -0.9719 -0.3316 28 1 1.6579 -2.0172 -2.3859 29 1 1.7499 1.2483 1.5420 30 1 1.9638 2.6358 2.6363 31 1 1.2988 2.8839 1.0040 32 1 3.9165 0.7073 2.1699 33 1 5.2406 1.3126 1.1194 34 1 5.9738 2.2808 3.1405 35 1 4.3230 2.3293 3.8273 36 1 5.9931 5.0769 3.7281 37 1 5.4544 7.2054 2.6191 38 1 3.9144 7.2358 0.6963 39 1 2.9173 5.1377 -0.1124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843589780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:36 Heat of formation + Delta-G solvation = 77.604852 kcal Electronic energy + Delta-G solvation = -22673.114787 eV Core-core repulsion = 19548.403034 eV Total energy + Delta-G solvation = -3124.711753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55707 -38.27385 -35.53455 -35.25871 -32.27777 -31.29943 -31.27165 -29.28801 -28.41761 -26.42471 -25.33024 -24.22381 -22.35709 -21.04510 -20.64675 -18.69014 -17.86920 -16.58895 -16.08017 -15.66299 -15.08578 -14.79432 -14.63324 -14.04934 -13.99733 -13.71949 -13.33419 -12.98015 -12.77184 -12.60830 -12.40510 -12.17306 -11.71036 -11.68224 -11.28883 -11.09205 -11.05366 -10.89468 -10.64709 -10.48335 -10.45350 -10.26323 -10.13675 -9.47028 -9.20312 -8.66835 -8.45445 -8.35175 -8.12222 -7.89475 -6.22570 -3.86759 1.69587 1.78931 3.14697 3.24506 3.29981 3.68809 3.90029 4.11181 4.14549 4.21895 4.67109 4.78391 4.95728 5.09221 5.27938 5.28895 5.38164 5.42562 5.50866 5.61717 5.78794 5.81384 5.87155 5.88711 6.05329 6.06901 6.21411 6.24659 6.32438 6.39647 6.48410 6.54876 6.70685 6.78438 6.89065 7.02733 7.11916 7.19139 7.36514 7.54914 8.03708 8.46074 8.88030 9.14243 9.37823 9.91008 10.68568 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.005708 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.523074 B = 4904.281506 C = 5387.817279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.089 4.089 3 C 0.210 3.790 4 N -0.441 5.441 5 C -0.300 4.300 6 H 0.103 0.897 7 C 0.027 3.973 8 N -0.880 5.880 9 Si 0.929 3.071 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.462 3.538 14 O -0.577 6.577 15 C -0.037 4.037 16 C -0.144 4.144 17 C -0.113 4.113 18 C -0.078 4.078 19 C -0.100 4.100 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.071 4.071 24 C -0.053 4.053 25 H 0.196 0.804 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.267 0.733 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 4.668 10.892 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.091 4.091 3 C 0.087 3.913 4 N -0.159 5.159 5 C -0.427 4.427 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.521 5.521 9 Si 0.756 3.244 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.250 3.750 14 O -0.461 6.461 15 C -0.040 4.040 16 C -0.201 4.201 17 C -0.151 4.151 18 C -0.115 4.115 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.089 4.089 24 C -0.053 4.053 25 H 0.213 0.787 26 H 0.086 0.914 27 H 0.148 0.852 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.467 4.901 10.427 11.782 hybrid contribution -0.408 -0.287 -1.082 1.192 sum 2.059 4.614 9.344 10.623 Atomic orbital electron populations 1.24233 0.95384 1.04851 1.06045 1.23115 0.94304 0.96338 0.95316 1.19161 0.84273 0.95952 0.91877 1.43631 1.55922 1.08726 1.07625 1.19765 1.32166 1.07211 0.83565 0.87910 1.25276 0.95736 0.96196 1.00189 1.69918 1.35590 1.12289 1.34278 0.85866 0.77615 0.78548 0.82324 1.20403 1.20920 1.19560 1.19753 0.83922 0.82740 0.88616 1.90515 1.53386 1.43369 1.58819 1.20210 0.96707 0.92069 0.95028 1.22162 0.93877 1.03983 1.00113 1.22569 0.98584 0.97279 0.96632 1.21031 1.01520 0.90604 0.98320 1.20575 0.97695 0.94966 0.96819 1.20457 1.01044 0.91552 1.00615 1.20919 0.99188 0.97316 0.97003 1.21004 0.98637 0.97776 0.97443 1.20750 0.99104 0.90957 0.98107 1.20063 0.96547 0.93711 0.95025 0.78694 0.91384 0.85234 0.92172 0.89777 0.92660 0.92396 0.89474 0.90288 0.90862 0.90335 0.86809 0.86530 0.86399 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -5.95 19.25 29.55 0.57 -5.38 16 2 C -0.09 -1.97 8.68 -37.12 -0.32 -2.29 16 3 C 0.21 4.58 4.57 -6.83 -0.03 4.55 16 4 N -0.44 -10.96 2.60 -117.93 -0.31 -11.27 16 5 C -0.30 -8.17 9.45 -14.93 -0.14 -8.31 16 6 H 0.10 2.96 7.27 -52.49 -0.38 2.58 16 7 C 0.03 0.71 5.38 -17.47 -0.09 0.61 16 8 N -0.88 -22.46 8.11 55.50 0.45 -22.01 16 9 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.46 11.12 6.32 -10.98 -0.07 11.05 16 14 O -0.58 -15.81 14.28 5.55 0.08 -15.73 16 15 C -0.04 -0.69 0.54 -155.78 -0.08 -0.78 16 16 C -0.14 -2.52 7.67 37.15 0.29 -2.23 16 17 C -0.11 -1.79 4.95 -25.32 -0.13 -1.92 16 18 C -0.08 -1.05 6.76 -26.85 -0.18 -1.23 16 19 C -0.10 -1.59 6.14 -104.21 -0.64 -2.23 16 20 C -0.12 -1.67 10.04 -39.53 -0.40 -2.07 16 21 C -0.13 -1.74 10.05 -39.62 -0.40 -2.14 16 22 C -0.13 -2.01 10.05 -39.63 -0.40 -2.40 16 23 C -0.07 -1.32 8.91 -39.54 -0.35 -1.67 16 24 C -0.05 -0.98 4.68 -104.20 -0.49 -1.47 16 25 H 0.20 3.36 7.80 -54.08 -0.42 2.94 16 26 H 0.07 1.25 2.76 -51.93 -0.14 1.11 16 27 H 0.13 3.04 6.07 -51.93 -0.32 2.73 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.08 1.47 3.52 -51.93 -0.18 1.29 16 30 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 32 H 0.09 1.21 6.03 -51.93 -0.31 0.89 16 33 H 0.08 1.34 7.91 -51.93 -0.41 0.93 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.12 2.47 7.41 -52.49 -0.39 2.08 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -30.58 313.09 -7.60 -38.18 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.65 Total: 8.24 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.87 Total: -17.89 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.14 Total: -33.28 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.58 -7.60 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843589780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.788 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds