Wall clock time and date at job start Tue Mar 31 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47074 * 221.36550 * 3 2 1 5 5 C 1.37100 * 119.99693 * 276.00616 * 4 3 2 6 6 H 1.08004 * 119.99570 * 28.23807 * 5 4 3 7 7 C 1.38944 * 120.00060 * 208.23333 * 5 4 3 8 8 N 1.31406 * 120.00067 * 35.97456 * 7 5 4 9 9 Si 1.86801 * 120.00149 * 215.97466 * 7 5 4 10 10 H 1.48500 * 109.47394 * 89.99757 * 9 7 5 11 11 H 1.48498 * 109.47465 * 210.00222 * 9 7 5 12 12 H 1.48504 * 109.47128 * 330.00278 * 9 7 5 13 13 C 1.34773 * 120.00277 * 96.00648 * 4 3 2 14 14 O 1.21295 * 120.00091 * 183.05225 * 13 4 3 15 15 C 1.50702 * 120.00011 * 3.05640 * 13 4 3 16 16 C 1.53002 * 110.34420 * 317.75738 * 15 13 4 17 17 C 1.54346 * 110.30314 * 195.62987 * 15 13 4 18 18 C 1.54341 * 102.39053 * 214.72901 * 17 15 13 19 19 C 1.51364 * 105.17341 * 26.34539 * 18 17 15 20 20 C 1.38501 * 130.39316 * 162.83030 * 19 18 17 21 21 C 1.38100 * 120.21473 * 179.71798 * 20 19 18 22 22 C 1.38259 * 119.93727 * 0.53766 * 21 20 19 23 23 C 1.38107 * 119.93028 * 359.44807 * 22 21 20 24 24 C 1.38217 * 109.76126 * 342.81358 * 19 18 17 25 25 H 4.40644 * 5.51463 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47576 * 101.36310 * 3 2 1 27 27 H 1.09000 * 109.47439 * 341.36113 * 3 2 1 28 28 H 0.96999 * 120.00092 * 184.92589 * 8 7 5 29 29 H 1.08995 * 109.46767 * 215.22413 * 16 15 13 30 30 H 1.09003 * 109.46991 * 335.22009 * 16 15 13 31 31 H 1.08998 * 109.47312 * 95.22637 * 16 15 13 32 32 H 1.09002 * 110.81933 * 332.95646 * 17 15 13 33 33 H 1.09000 * 110.81940 * 96.30696 * 17 15 13 34 34 H 1.09006 * 110.30095 * 145.27117 * 18 17 15 35 35 H 1.09004 * 110.30397 * 267.32604 * 18 17 15 36 36 H 1.07998 * 119.89156 * 359.97438 * 20 19 18 37 37 H 1.07998 * 120.03735 * 180.27894 * 21 20 19 38 38 H 1.07993 * 120.03627 * 179.71303 * 22 21 20 39 39 H 1.08002 * 119.89075 * 180.27413 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0375 0.9128 5 6 3.2446 2.3340 0.4810 6 1 2.5948 2.7004 -0.3000 7 6 4.1927 3.1766 1.0483 8 7 5.3634 2.7005 1.4082 9 14 3.8032 4.9862 1.2992 10 1 3.1923 5.1800 2.6388 11 1 5.0551 5.7796 1.2066 12 1 2.8524 5.4378 0.2516 13 6 3.4738 0.7169 2.1770 14 8 3.8249 1.5840 2.9491 15 6 3.4177 -0.7189 2.6312 16 6 2.1505 -1.3947 2.1036 17 6 3.4636 -0.7954 4.1721 18 6 4.2680 -2.0899 4.4157 19 6 5.1352 -2.2547 3.1861 20 6 6.2624 -3.0328 2.9805 21 6 6.8959 -3.0279 1.7534 22 6 6.4106 -2.2357 0.7295 23 6 5.2865 -1.4594 0.9325 24 6 4.6467 -1.4670 2.1607 25 1 -1.0502 -0.0001 -0.0003 26 1 3.0093 0.2033 -1.0074 27 1 3.0098 -0.9729 0.3284 28 1 5.9983 3.2711 1.8688 29 1 1.7823 -2.1048 2.8440 30 1 1.3879 -0.6392 1.9140 31 1 2.3785 -1.9214 1.1770 32 1 3.9835 0.0679 4.5875 33 1 2.4585 -0.8764 4.5860 34 1 4.8891 -1.9874 5.3056 35 1 3.5938 -2.9398 4.5215 36 1 6.6447 -3.6484 3.7812 37 1 7.7720 -3.6391 1.5949 38 1 6.9075 -2.2271 -0.2293 39 1 4.9054 -0.8441 0.1308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843589782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:38 Heat of formation + Delta-G solvation = 86.918403 kcal Electronic energy + Delta-G solvation = -23077.022311 eV Core-core repulsion = 19952.714424 eV Total energy + Delta-G solvation = -3124.307887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54767 -38.09612 -35.47329 -34.96696 -32.69147 -31.68410 -30.94512 -29.29595 -28.32933 -26.55549 -25.05500 -24.07061 -22.23290 -21.01578 -20.62351 -18.85058 -17.82669 -16.61590 -16.15276 -15.47308 -15.03892 -14.66279 -14.59552 -14.29553 -14.10307 -13.74528 -13.17245 -12.79931 -12.69979 -12.57070 -12.26957 -11.88298 -11.77131 -11.51003 -11.39380 -11.18332 -10.86989 -10.71237 -10.64094 -10.45889 -10.27375 -10.17141 -10.10550 -9.81218 -9.35953 -8.85018 -8.43511 -8.25689 -7.93883 -7.16074 -6.18064 -3.71114 1.75831 1.81220 3.25278 3.36330 3.39369 3.47458 3.52368 4.06363 4.27265 4.41381 4.78272 4.88176 4.91980 5.18216 5.30007 5.34050 5.35958 5.45697 5.51499 5.63219 5.78343 5.80922 5.86723 5.96422 6.01202 6.06594 6.22885 6.28473 6.36628 6.38278 6.40779 6.50247 6.51722 6.68728 6.81363 6.83715 6.93978 7.12807 7.40767 7.64534 8.12446 8.17486 8.99304 9.16566 9.66668 10.26271 10.90173 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.007578 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.245071 B = 3693.869365 C = 4229.985971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.160 4.160 3 C 0.177 3.823 4 N -0.439 5.439 5 C -0.368 4.368 6 H 0.083 0.917 7 C 0.090 3.910 8 N -0.798 5.798 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.476 3.524 14 O -0.530 6.530 15 C -0.041 4.041 16 C -0.150 4.150 17 C -0.101 4.101 18 C -0.078 4.078 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.093 4.093 24 C -0.063 4.063 25 H 0.210 0.790 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.264 0.736 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -12.438 0.525 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.162 4.162 3 C 0.054 3.946 4 N -0.159 5.159 5 C -0.493 4.493 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.431 5.431 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.200 1.200 13 C 0.263 3.737 14 O -0.408 6.408 15 C -0.044 4.044 16 C -0.207 4.207 17 C -0.139 4.139 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.111 4.111 24 C -0.063 4.063 25 H 0.227 0.773 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.575 -11.925 0.934 12.065 hybrid contribution -0.246 0.909 0.056 0.944 sum -1.821 -11.016 0.990 11.209 Atomic orbital electron populations 1.24697 0.95701 1.02299 1.02982 1.24020 0.95269 0.98789 0.98097 1.19271 0.83505 0.95082 0.96762 1.43287 1.58444 1.06713 1.07478 1.18959 1.18376 0.85588 1.26359 0.89909 1.24765 0.92374 0.98904 0.96324 1.70100 1.03336 1.38409 1.31223 0.86564 0.77780 0.84921 0.79033 1.20421 1.21662 1.20025 1.19380 0.83842 0.88212 0.82224 1.90498 1.48413 1.49307 1.52613 1.20304 0.92857 0.94829 0.96439 1.22616 0.96742 1.00749 1.00594 1.22313 1.00323 0.97927 0.93292 1.21031 0.96870 0.98241 0.95358 1.20563 0.95711 0.97057 0.96238 1.20483 0.95585 1.00030 0.97230 1.20919 0.99980 1.00165 0.93417 1.20975 0.96563 0.97299 0.99122 1.20874 0.95380 0.97892 0.96971 1.20308 0.96177 0.96117 0.93742 0.77320 0.89615 0.87697 0.92538 0.92849 0.90287 0.91592 0.88997 0.90993 0.91041 0.90757 0.86841 0.86483 0.86224 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.86 18.89 29.55 0.56 -3.30 16 2 C -0.16 -2.97 10.42 -37.12 -0.39 -3.36 16 3 C 0.18 3.51 3.95 -6.83 -0.03 3.49 16 4 N -0.44 -10.88 2.53 -117.93 -0.30 -11.18 16 5 C -0.37 -10.19 9.31 -14.93 -0.14 -10.33 16 6 H 0.08 2.25 8.03 -52.48 -0.42 1.83 16 7 C 0.09 2.55 3.79 -17.47 -0.07 2.48 16 8 N -0.80 -23.63 11.78 55.50 0.65 -22.98 16 9 Si 0.89 22.35 29.68 -169.99 -5.04 17.31 16 10 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.48 12.01 5.63 -10.99 -0.06 11.95 16 14 O -0.53 -15.61 12.61 5.54 0.07 -15.54 16 15 C -0.04 -0.80 0.55 -155.77 -0.09 -0.89 16 16 C -0.15 -2.54 7.02 37.16 0.26 -2.28 16 17 C -0.10 -1.83 5.82 -25.32 -0.15 -1.97 16 18 C -0.08 -1.18 6.76 -26.85 -0.18 -1.36 16 19 C -0.10 -1.63 6.14 -104.21 -0.64 -2.27 16 20 C -0.12 -1.73 10.04 -39.54 -0.40 -2.13 16 21 C -0.13 -1.85 10.05 -39.62 -0.40 -2.24 16 22 C -0.12 -1.95 10.05 -39.62 -0.40 -2.35 16 23 C -0.09 -1.75 8.78 -39.54 -0.35 -2.09 16 24 C -0.06 -1.21 4.53 -104.21 -0.47 -1.68 16 25 H 0.21 2.53 7.80 -54.08 -0.42 2.11 16 26 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 27 H 0.11 1.88 2.28 -51.93 -0.12 1.77 16 28 H 0.26 7.61 8.32 -40.82 -0.34 7.27 16 29 H 0.05 0.77 7.67 -51.93 -0.40 0.37 16 30 H 0.08 1.45 4.66 -51.93 -0.24 1.20 16 31 H 0.07 1.04 5.46 -51.93 -0.28 0.76 16 32 H 0.09 1.93 6.89 -51.93 -0.36 1.57 16 33 H 0.07 1.15 7.78 -51.93 -0.40 0.74 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.13 2.47 5.93 -52.49 -0.31 2.16 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -33.19 312.99 -7.46 -40.65 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.63 Total: 5.35 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.93 Total: -18.34 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.36 Total: -34.15 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.07 Total: -15.54 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.04 Total: 17.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.19 -7.46 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843589782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.570 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds