Wall clock time and date at job start Tue Mar 31 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53046 * 109.45583 * 175.36444 * 3 2 1 5 5 C 1.53186 * 109.30902 * 178.62664 * 4 3 2 6 6 N 1.46926 * 108.89711 * 54.56667 * 5 4 3 7 7 C 1.34775 * 120.63621 * 126.45954 * 6 5 4 8 8 O 1.21554 * 119.99493 * 353.92735 * 7 6 5 9 9 C 1.47881 * 120.00252 * 173.91919 * 7 6 5 10 10 C 1.39923 * 120.02711 * 325.61494 * 9 7 6 11 11 C 1.38328 * 120.35683 * 179.78375 * 10 9 7 12 12 C 1.37755 * 120.41509 * 0.46698 * 11 10 9 13 13 C 1.40755 * 120.03537 * 359.79042 * 12 11 10 14 14 C 1.41432 * 120.17321 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99892 * 150.98951 * 14 13 12 16 16 C 1.39933 * 120.00525 * 330.99371 * 14 13 12 17 17 N 1.30828 * 120.00389 * 162.11741 * 16 14 13 18 18 Si 1.86800 * 120.00015 * 342.11905 * 16 14 13 19 19 H 1.48504 * 109.47377 * 94.41066 * 18 16 14 20 20 H 1.48500 * 109.47283 * 214.41496 * 18 16 14 21 21 H 1.48508 * 109.46928 * 334.41473 * 18 16 14 22 22 C 1.38995 * 120.02276 * 145.88859 * 9 7 6 23 23 C 1.46966 * 118.71306 * 306.63895 * 6 5 4 24 24 C 1.53040 * 109.44905 * 55.30693 * 3 2 1 25 25 H 4.44650 * 5.63405 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46017 * 295.33333 * 3 2 1 27 27 H 1.08996 * 109.49439 * 58.67491 * 4 3 2 28 28 H 1.09000 * 109.49718 * 298.58126 * 4 3 2 29 29 H 1.09007 * 109.58732 * 174.42211 * 5 4 3 30 30 H 1.08997 * 109.58897 * 294.70619 * 5 4 3 31 31 H 1.08001 * 119.81652 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.79010 * 180.23959 * 11 10 9 33 33 H 1.07997 * 119.97962 * 179.76291 * 12 11 10 34 34 H 0.96997 * 120.00156 * 180.02562 * 17 16 14 35 35 H 1.07997 * 120.20387 * 0.02562 * 22 9 7 36 36 H 1.08997 * 109.46916 * 293.57514 * 23 6 5 37 37 H 1.08995 * 109.71414 * 173.27821 * 23 6 5 38 38 H 1.09000 * 109.49535 * 301.32529 * 24 3 2 39 39 H 1.08990 * 109.50060 * 61.42555 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1552 1.4392 -0.1166 5 6 4.6867 1.4389 -0.0818 6 7 5.1862 0.5356 -1.1273 7 6 6.0817 0.9672 -2.0375 8 8 6.4004 2.1398 -2.0677 9 6 6.6765 0.0142 -2.9992 10 6 6.9317 -1.3054 -2.6103 11 6 7.4838 -2.2038 -3.5056 12 6 7.7977 -1.8075 -4.7871 13 6 7.5531 -0.4827 -5.1947 14 6 7.8747 -0.0726 -6.5095 15 1 7.3098 0.7174 -6.9821 16 6 8.9246 -0.6904 -7.1981 17 7 9.0092 -0.5786 -8.4989 18 14 10.2054 -1.6748 -6.2601 19 1 9.8202 -3.1090 -6.2534 20 1 11.5278 -1.5205 -6.9180 21 1 10.2865 -1.1775 -4.8632 22 6 6.9878 0.4303 -4.2883 23 6 4.6876 -0.8464 -1.1638 24 6 3.1560 -0.8205 -1.1865 25 1 -1.0501 -0.0005 -0.0002 26 1 3.0094 -0.4389 0.9289 27 1 2.7724 2.0292 0.7161 28 1 2.8127 1.8713 -1.0569 29 1 5.0565 2.4481 -0.2636 30 1 5.0299 1.0942 0.8936 31 1 6.6935 -1.6251 -1.6065 32 1 7.6734 -3.2212 -3.1969 33 1 8.2320 -2.5137 -5.4792 34 1 9.7367 -1.0071 -8.9762 35 1 6.7970 1.4491 -4.5914 36 1 5.0309 -1.3799 -0.2775 37 1 5.0578 -1.3473 -2.0582 38 1 2.7739 -1.8388 -1.1152 39 1 2.8136 -0.3672 -2.1167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843708759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:27 Heat of formation + Delta-G solvation = 37.645270 kcal Electronic energy + Delta-G solvation = -21463.659891 eV Core-core repulsion = 18337.215360 eV Total energy + Delta-G solvation = -3126.444531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15373 -37.93962 -37.09195 -34.35280 -33.69189 -31.81756 -31.13491 -30.35256 -29.90497 -25.89503 -25.39961 -23.41863 -22.75563 -21.00436 -20.73493 -19.23965 -18.32518 -17.55671 -16.26884 -16.02066 -15.50145 -15.07307 -14.94162 -14.62913 -14.23250 -14.20454 -13.62994 -13.60424 -12.99152 -12.80791 -12.67393 -12.43401 -12.03885 -11.84319 -11.44481 -11.38606 -11.26171 -11.14068 -11.05945 -10.81324 -10.54765 -10.19143 -10.15847 -9.96783 -9.73891 -9.46570 -9.06105 -8.49141 -7.88825 -7.73310 -7.03329 -4.57825 1.97687 2.47883 2.66359 2.68721 3.03943 3.16133 3.21708 3.25336 3.48525 3.91392 4.12702 4.41001 4.64464 4.74791 4.97364 5.02601 5.16194 5.22832 5.29735 5.39980 5.53456 5.63431 5.72890 5.83450 5.87696 5.93388 5.95994 5.98083 6.06309 6.20427 6.35336 6.61659 6.65751 6.74823 6.96431 7.20031 7.36923 7.46562 7.47903 7.65957 7.72735 7.93914 8.24907 8.50180 8.61407 8.68793 9.98665 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029248 B = 0.003924 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.087762 B = 7134.008674 C = 7263.946232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.175 4.175 3 C 0.019 3.981 4 C -0.124 4.124 5 C 0.112 3.888 6 N -0.614 5.614 7 C 0.568 3.432 8 O -0.546 6.546 9 C -0.102 4.102 10 C -0.227 4.227 11 C -0.081 4.081 12 C -0.226 4.226 13 C 0.085 3.915 14 C -0.441 4.441 15 H 0.093 0.907 16 C 0.083 3.917 17 N -0.803 5.803 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.243 1.243 22 C -0.143 4.143 23 C 0.092 3.908 24 C -0.127 4.127 25 H 0.216 0.784 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.287 0.713 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -3.001 14.564 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.175 4.175 3 C 0.001 3.999 4 C -0.162 4.162 5 C -0.010 4.010 6 N -0.348 5.348 7 C 0.359 3.641 8 O -0.424 6.424 9 C -0.105 4.105 10 C -0.246 4.246 11 C -0.099 4.099 12 C -0.246 4.246 13 C 0.082 3.918 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.136 4.136 17 N -0.426 5.426 18 Si 0.739 3.261 19 H -0.195 1.195 20 H -0.217 1.217 21 H -0.166 1.166 22 C -0.163 4.163 23 C -0.030 4.030 24 C -0.165 4.165 25 H 0.232 0.768 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.450 -2.362 14.255 17.265 hybrid contribution 0.245 -0.548 0.248 0.650 sum -9.206 -2.910 14.503 17.423 Atomic orbital electron populations 1.24875 0.95883 1.01078 1.01400 1.23115 0.94276 1.00114 0.99984 1.18371 0.84320 0.97163 1.00061 1.21936 0.95743 0.95246 1.03284 1.21509 0.92688 0.96288 0.90557 1.47972 1.43792 1.12404 1.30661 1.18910 0.77740 0.87822 0.79586 1.90699 1.61949 1.18111 1.71657 1.19369 1.03169 0.93448 0.94501 1.20589 1.11638 0.93026 0.99369 1.20526 0.97981 0.97664 0.93757 1.21174 1.10255 0.96251 0.96899 1.17669 0.90721 0.90689 0.92724 1.19531 1.13852 1.17549 0.95959 0.88898 1.26177 0.98861 0.94026 0.94573 1.69683 1.29579 1.35145 1.08228 0.86301 0.78286 0.79724 0.81810 1.19529 1.21725 1.16627 1.21164 1.04968 0.98540 0.91599 1.22364 0.92693 0.83116 1.04833 1.22002 0.96064 1.00425 0.98013 0.76756 0.88963 0.90576 0.90958 0.88685 0.91658 0.87544 0.88232 0.87887 0.90260 0.87151 0.91617 0.86053 0.90335 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.09 19.25 29.55 0.57 -1.52 16 2 C -0.17 -1.91 12.56 -37.12 -0.47 -2.37 16 3 C 0.02 0.19 2.53 -93.36 -0.24 -0.04 16 4 C -0.12 -1.32 5.32 -26.61 -0.14 -1.47 16 5 C 0.11 1.39 6.44 -3.71 -0.02 1.36 16 6 N -0.61 -9.25 2.98 -173.84 -0.52 -9.77 16 7 C 0.57 11.17 7.39 -12.31 -0.09 11.08 16 8 O -0.55 -12.35 16.21 5.32 0.09 -12.26 16 9 C -0.10 -2.14 5.31 -105.04 -0.56 -2.70 16 10 C -0.23 -4.27 7.37 -38.92 -0.29 -4.56 16 11 C -0.08 -1.60 10.01 -39.73 -0.40 -2.00 16 12 C -0.23 -5.17 7.17 -38.81 -0.28 -5.45 16 13 C 0.09 2.11 5.13 -106.87 -0.55 1.56 16 14 C -0.44 -11.74 9.57 -37.73 -0.36 -12.10 16 15 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 16 C 0.08 2.14 5.41 -17.34 -0.09 2.05 16 17 N -0.80 -21.00 13.93 55.55 0.77 -20.23 16 18 Si 0.91 20.30 24.48 -169.99 -4.16 16.14 16 19 H -0.27 -5.72 6.65 56.52 0.38 -5.34 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 21 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 22 C -0.14 -3.38 9.35 -38.44 -0.36 -3.74 16 23 C 0.09 1.14 4.74 -3.69 -0.02 1.13 16 24 C -0.13 -1.39 5.32 -26.61 -0.14 -1.53 16 25 H 0.22 1.34 7.80 -54.08 -0.42 0.92 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.32 7.00 -51.92 -0.36 0.96 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.11 1.67 5.94 -52.49 -0.31 1.36 16 32 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.10 2.34 4.55 -52.49 -0.24 2.10 16 34 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 35 H 0.11 2.67 7.98 -52.49 -0.42 2.25 16 36 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 37 H 0.12 1.71 4.45 -51.93 -0.23 1.48 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -29.24 320.09 -7.39 -36.62 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.96 Total: 4.98 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -3.43 Total: -20.31 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.26 Total: -30.00 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.16 Total: 16.14 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.24 -7.39 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843708759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.269 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds