Wall clock time and date at job start Tue Mar 31 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48507 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47251 * 299.99606 * 3 2 1 6 6 H 1.48497 * 109.47495 * 59.99998 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.64965 * 178.98958 * 13 12 11 15 15 O 1.21611 * 119.99962 * 179.97438 * 14 13 12 16 16 C 1.47293 * 119.99924 * 359.96909 * 14 13 12 17 17 F 1.35100 * 119.99932 * 0.02562 * 16 14 13 18 18 C 1.33119 * 119.99958 * 180.02562 * 16 14 13 19 19 C 1.51447 * 126.33818 * 359.68773 * 18 16 14 20 20 C 1.54275 * 106.84618 * 180.24408 * 19 18 16 21 21 C 1.54983 * 103.66357 * 23.48406 * 20 19 18 22 22 C 1.51839 * 126.34047 * 180.02562 * 18 16 14 23 23 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 24 24 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 26 26 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 27 27 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 28 28 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 29 29 H 1.08998 * 109.88332 * 218.23443 * 12 11 9 30 30 H 1.08995 * 109.98747 * 299.72756 * 19 18 16 31 31 H 1.08999 * 109.98215 * 61.03951 * 19 18 16 32 32 H 1.09004 * 110.79684 * 264.85654 * 20 19 18 33 33 H 1.09000 * 110.43018 * 141.93900 * 20 19 18 34 34 H 1.08997 * 110.83089 * 204.48929 * 21 20 19 35 35 H 1.08997 * 110.82947 * 80.91459 * 21 20 19 36 36 H 1.08999 * 110.44313 * 274.92550 * 22 18 16 37 37 H 1.09001 * 110.44216 * 37.32145 * 22 18 16 38 38 H 1.09009 * 110.36844 * 265.29198 * 23 13 12 39 39 H 1.09002 * 110.37005 * 142.96697 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7040 -4.7411 2.1546 15 8 -1.5554 -4.0800 2.7176 16 6 -0.7443 -6.2115 2.2296 17 9 0.2018 -6.9459 1.6044 18 6 -1.7129 -6.8169 2.9133 19 6 -2.8360 -6.1387 3.6698 20 6 -3.6922 -7.2583 4.2972 21 6 -2.7157 -8.4583 4.3887 22 6 -1.8920 -8.3148 3.0851 23 6 0.4363 -2.6710 1.3058 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2208 -1.8683 -1.2404 26 1 2.5435 -4.0093 -0.9176 27 1 3.0876 -3.4620 0.7006 28 1 0.9492 -5.4571 -0.0284 29 1 1.9710 -5.3826 1.4325 30 1 -2.4259 -5.4986 4.4508 31 1 -3.4435 -5.5481 2.9841 32 1 -4.5399 -7.5022 3.6568 33 1 -4.0331 -6.9653 5.2902 34 1 -3.2613 -9.4019 4.4008 35 1 -2.0733 -8.3694 5.2647 36 1 -2.4405 -8.7320 2.2406 37 1 -0.9238 -8.8047 3.1885 38 1 0.9845 -2.2567 2.1520 39 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:14 Heat of formation + Delta-G solvation = -124.661480 kcal Electronic energy + Delta-G solvation = -22983.759897 eV Core-core repulsion = 19419.507993 eV Total energy + Delta-G solvation = -3564.251904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.68230 -39.46053 -38.17208 -36.98714 -34.27122 -32.20596 -31.24579 -30.17345 -28.89714 -27.92187 -26.07957 -24.51714 -22.52391 -21.01561 -20.18074 -19.57120 -18.36148 -17.30509 -16.87141 -16.18548 -16.09744 -15.30962 -15.19819 -15.01188 -14.52274 -14.34556 -13.54626 -13.45937 -13.14818 -13.07427 -12.83355 -12.58394 -12.32823 -11.90052 -11.63318 -11.50072 -11.43280 -11.26134 -11.18715 -11.05878 -10.77013 -10.72543 -10.57874 -10.48499 -10.19896 -9.45412 -9.36129 -8.80067 -8.70949 -8.39388 -7.78805 -6.30882 -4.40762 1.34656 3.18081 3.27340 3.30722 3.42220 3.48728 4.23589 4.24118 4.46428 4.55581 4.87285 4.96281 5.10433 5.22101 5.33176 5.43738 5.45928 5.63721 5.69207 5.71438 5.80918 5.85738 5.92784 6.02164 6.06834 6.15373 6.19018 6.29310 6.50647 6.54580 6.72951 6.83309 6.96379 7.23800 7.32770 7.71995 7.97370 8.12011 8.54321 8.64105 9.28891 9.40158 10.76244 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.004243 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.803379 B = 6597.415529 C = 7131.800417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.119 4.119 12 C 0.104 3.896 13 N -0.598 5.598 14 C 0.551 3.449 15 O -0.533 6.533 16 C 0.007 3.993 17 F -0.137 7.137 18 C -0.094 4.094 19 C -0.076 4.076 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.092 4.092 23 C 0.095 3.905 24 H 0.270 0.730 25 H 0.384 0.616 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 -13.912 6.139 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.157 4.157 12 C -0.019 4.019 13 N -0.329 5.329 14 C 0.338 3.662 15 O -0.413 6.413 16 C -0.016 4.016 17 F -0.115 7.115 18 C -0.097 4.097 19 C -0.113 4.113 20 C -0.165 4.165 21 C -0.159 4.159 22 C -0.129 4.129 23 C -0.026 4.026 24 H 0.080 0.920 25 H 0.235 0.765 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.422 -14.022 6.346 15.767 hybrid contribution 0.386 1.256 -0.073 1.316 sum -3.036 -12.766 6.273 14.545 Atomic orbital electron populations 1.69659 1.06018 1.27898 1.49727 1.25095 0.95049 0.99828 0.93303 0.86334 0.80057 0.82645 0.77792 1.19548 1.20716 1.20742 1.21528 0.93779 0.89990 1.52317 0.91349 1.19617 0.86150 0.91809 0.81685 1.86087 1.53909 1.52062 1.47181 1.22662 0.97715 0.94995 1.00350 1.22150 0.88615 0.95922 0.95218 1.48680 1.25558 1.10179 1.48521 1.17773 0.82011 0.86025 0.80346 1.90784 1.38504 1.65024 1.47033 1.19087 0.91123 0.89223 1.02120 1.91449 1.62796 1.76653 1.80637 1.22875 0.94572 0.97262 0.94983 1.21095 0.93790 0.97059 0.99365 1.22477 0.97891 0.95084 1.01077 1.22507 0.97757 0.98606 0.97070 1.21438 1.01176 0.91465 0.98838 1.23338 1.02886 0.76009 1.00381 0.91950 0.76495 0.90605 0.90379 0.91729 0.92279 0.89324 0.89357 0.91277 0.91088 0.90997 0.91085 0.89513 0.90486 0.91889 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 10.68 55.43 0.59 -23.12 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -13.93 8.26 -34.44 -0.28 -14.22 16 8 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 9 C 0.25 6.05 0.89 -89.63 -0.08 5.97 16 10 O -0.58 -15.03 13.19 -35.23 -0.46 -15.49 16 11 C -0.12 -2.42 6.13 -24.90 -0.15 -2.58 16 12 C 0.10 1.97 5.48 -3.07 -0.02 1.95 16 13 N -0.60 -12.85 3.33 -171.84 -0.57 -13.43 16 14 C 0.55 11.38 7.80 -12.58 -0.10 11.28 16 15 O -0.53 -12.03 14.38 5.27 0.08 -11.96 16 16 C 0.01 0.11 7.31 -37.68 -0.28 -0.16 16 17 F -0.14 -2.22 14.16 2.25 0.03 -2.18 16 18 C -0.09 -1.34 6.16 -100.20 -0.62 -1.95 16 19 C -0.08 -1.02 4.81 -26.85 -0.13 -1.15 16 20 C -0.13 -1.24 6.88 -25.02 -0.17 -1.41 16 21 C -0.12 -1.07 6.94 -24.70 -0.17 -1.25 16 22 C -0.09 -0.98 6.44 -26.34 -0.17 -1.15 16 23 C 0.09 2.30 5.51 -2.53 -0.01 2.28 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.38 10.17 7.18 45.56 0.33 10.50 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.08 1.48 8.02 -51.93 -0.42 1.06 16 28 H 0.06 1.20 7.57 -51.93 -0.39 0.80 16 29 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 30 H 0.09 1.29 7.67 -51.93 -0.40 0.90 16 31 H 0.09 1.31 7.68 -51.93 -0.40 0.92 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.55 8.03 -51.92 -0.42 1.13 16 39 H 0.09 2.33 7.48 -51.93 -0.39 1.95 16 LS Contribution 318.88 15.07 4.81 4.81 Total: -1.00 -28.22 318.88 -7.81 -36.04 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.99 Total: 10.83 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.27 Total: -0.66 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.02 Total: -36.55 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.39 Total: -27.45 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.03 Total: -2.18 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.22 -7.81 -36.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.626 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds