Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53035 * 109.46374 * 67.67182 * 3 2 1 5 5 C 1.53188 * 109.31922 * 178.61064 * 4 3 2 6 6 N 1.46932 * 108.77089 * 54.63168 * 5 4 3 7 7 C 1.34778 * 120.62804 * 126.37482 * 6 5 4 8 8 O 1.21614 * 119.99765 * 354.73106 * 7 6 5 9 9 C 1.47428 * 120.00072 * 174.73446 * 7 6 5 10 10 C 1.39226 * 120.28242 * 306.87534 * 9 7 6 11 11 C 1.38219 * 120.09484 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.67318 * 0.02562 * 11 10 9 13 13 C 1.37597 * 120.57349 * 359.97438 * 12 11 10 14 14 C 1.40703 * 119.87659 * 359.73720 * 13 12 11 15 15 C 1.40891 * 120.32523 * 180.25352 * 14 13 12 16 16 H 1.08004 * 120.00356 * 148.97969 * 15 14 13 17 17 C 1.40277 * 120.00139 * 328.98728 * 15 14 13 18 18 N 1.30626 * 120.00029 * 167.93964 * 17 15 14 19 19 Si 1.86802 * 119.99940 * 347.93034 * 17 15 14 20 20 H 1.48500 * 109.46749 * 92.57189 * 19 17 15 21 21 H 1.48501 * 109.46922 * 212.57307 * 19 17 15 22 22 H 1.48506 * 109.46804 * 332.57063 * 19 17 15 23 23 C 1.46925 * 118.74313 * 306.39494 * 6 5 4 24 24 C 1.53041 * 109.46197 * 307.60018 * 3 2 1 25 25 H 4.44654 * 5.63550 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.44575 * 187.64017 * 3 2 1 27 27 H 1.09005 * 109.49632 * 58.66066 * 4 3 2 28 28 H 1.08997 * 109.49702 * 298.56588 * 4 3 2 29 29 H 1.09002 * 109.58707 * 294.85581 * 5 4 3 30 30 H 1.08996 * 109.59214 * 174.41925 * 5 4 3 31 31 H 1.08007 * 119.95032 * 0.02562 * 10 9 7 32 32 H 1.07992 * 119.66130 * 180.02562 * 11 10 9 33 33 H 1.08005 * 119.71296 * 179.97438 * 12 11 10 34 34 H 1.08001 * 120.05937 * 180.02562 * 13 12 11 35 35 H 0.96998 * 119.99974 * 180.02562 * 18 17 15 36 36 H 1.08992 * 109.58872 * 173.39650 * 23 6 5 37 37 H 1.09002 * 109.58588 * 293.67893 * 23 6 5 38 38 H 1.09003 * 109.49714 * 61.43606 * 24 3 2 39 39 H 1.08997 * 109.52462 * 301.35985 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1561 -0.5473 -1.3347 5 6 4.6876 -0.5128 -1.3446 6 7 5.1844 -1.2358 -0.1659 7 6 6.0785 -2.2354 -0.3000 8 8 6.4092 -2.6107 -1.4085 9 6 6.6554 -2.8738 0.8971 10 6 7.2572 -2.0990 1.8850 11 6 7.7964 -2.7016 3.0060 12 6 7.7466 -4.0801 3.1621 13 6 7.1585 -4.8723 2.2030 14 6 6.5968 -4.2832 1.0553 15 6 5.9876 -5.0849 0.0698 16 1 5.1634 -4.6957 -0.5095 17 6 6.4514 -6.3889 -0.1589 18 7 5.7517 -7.2115 -0.8937 19 14 8.0699 -6.9488 0.5871 20 1 7.8128 -7.5952 1.8991 21 1 8.7247 -7.9215 -0.3241 22 1 8.9588 -5.7748 0.7793 23 6 4.6877 -0.8488 1.1616 24 6 3.1562 -0.8795 1.1432 25 1 -1.0500 0.0001 -0.0002 26 1 3.0084 1.0196 0.1367 27 1 2.7732 0.0664 -2.1502 28 1 2.8145 -1.5747 -1.4606 29 1 5.0300 0.5215 -1.3098 30 1 5.0581 -0.9924 -2.2505 31 1 7.3019 -1.0254 1.7756 32 1 8.2611 -2.0938 3.7681 33 1 8.1732 -4.5347 4.0441 34 1 7.1241 -5.9439 2.3331 35 1 6.0722 -8.1133 -1.0515 36 1 5.0584 -1.5500 1.9091 37 1 5.0323 0.1571 1.4017 38 1 2.8147 -1.9039 0.9941 39 1 2.7734 -0.5029 2.0917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869082602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = 33.119383 kcal Electronic energy + Delta-G solvation = -22045.998792 eV Core-core repulsion = 18919.358004 eV Total energy + Delta-G solvation = -3126.640788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.77450 -37.83681 -36.67430 -34.04316 -33.63228 -31.52865 -30.89024 -30.58028 -29.69056 -25.86830 -25.02331 -23.18991 -22.39948 -21.31229 -20.52315 -18.72346 -18.07623 -17.45801 -16.69585 -15.71171 -15.25696 -14.76208 -14.71466 -14.27152 -14.10823 -13.97704 -13.71245 -13.51641 -12.80190 -12.62122 -12.44174 -12.10612 -12.01963 -11.67337 -11.39918 -11.18202 -11.11006 -11.02110 -10.89003 -10.88526 -10.40805 -10.02751 -10.00159 -9.96202 -9.76903 -9.26154 -8.80370 -8.13243 -7.76786 -7.70379 -7.00723 -4.56330 2.22880 2.57542 2.81614 2.83941 3.06837 3.18065 3.29691 3.54060 3.77779 3.94243 4.29885 4.46500 4.86251 4.95619 5.17514 5.25378 5.31053 5.43417 5.50022 5.68834 5.72309 5.82735 5.85271 5.93689 5.98536 6.05098 6.12801 6.19059 6.19519 6.35553 6.42773 6.51618 6.76458 7.02829 7.07058 7.23061 7.41996 7.54496 7.61697 7.71147 7.96568 8.09857 8.28940 8.53394 8.68788 9.12574 10.00444 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.005533 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.175702 B = 5059.453628 C = 5628.155091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.171 4.171 3 C 0.020 3.980 4 C -0.124 4.124 5 C 0.114 3.886 6 N -0.622 5.622 7 C 0.585 3.415 8 O -0.534 6.534 9 C -0.240 4.240 10 C -0.045 4.045 11 C -0.254 4.254 12 C -0.063 4.063 13 C -0.235 4.235 14 C 0.121 3.879 15 C -0.412 4.412 16 H 0.092 0.908 17 C 0.083 3.917 18 N -0.796 5.796 19 Si 0.917 3.083 20 H -0.270 1.270 21 H -0.290 1.290 22 H -0.240 1.240 23 C 0.111 3.889 24 C -0.126 4.126 25 H 0.215 0.785 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.288 0.712 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 11.281 4.167 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.171 4.171 3 C 0.002 3.998 4 C -0.163 4.163 5 C -0.009 4.009 6 N -0.358 5.358 7 C 0.377 3.623 8 O -0.409 6.409 9 C -0.245 4.245 10 C -0.064 4.064 11 C -0.273 4.273 12 C -0.082 4.082 13 C -0.254 4.254 14 C 0.117 3.883 15 C -0.439 4.439 16 H 0.110 0.890 17 C -0.138 4.138 18 N -0.419 5.419 19 Si 0.744 3.256 20 H -0.196 1.196 21 H -0.218 1.218 22 H -0.163 1.163 23 C -0.013 4.013 24 C -0.164 4.164 25 H 0.232 0.768 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.296 10.816 3.371 12.116 hybrid contribution 0.205 -0.363 0.313 0.521 sum -4.090 10.453 3.685 11.814 Atomic orbital electron populations 1.24838 0.95856 1.01691 1.01268 1.23157 0.94319 0.99748 0.99916 1.18355 0.84205 1.00488 0.96729 1.21940 0.96082 1.02433 0.95812 1.21438 0.92492 0.96219 0.90722 1.48142 1.44636 1.36423 1.06606 1.18457 0.77339 0.76974 0.89579 1.90704 1.61013 1.61739 1.27484 1.19356 1.13939 0.94222 0.96959 1.20703 0.95947 0.97129 0.92590 1.20259 1.12403 0.94332 1.00298 1.20699 0.96460 0.93911 0.97110 1.21034 1.09539 0.98358 0.96466 1.17442 0.88856 0.90415 0.91618 1.19533 1.14304 0.95485 1.14561 0.89006 1.26272 0.98987 0.95366 0.93190 1.69558 1.36699 1.06418 1.29197 0.86260 0.82105 0.79429 0.77846 1.19594 1.21787 1.16341 1.21735 0.92608 1.00976 0.85941 1.21968 0.96162 1.00780 0.97516 0.76820 0.89122 0.90850 0.90844 0.92151 0.88759 0.88426 0.88482 0.88593 0.87846 0.90126 0.87973 0.92132 0.90723 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.50 19.25 29.55 0.57 -1.93 16 2 C -0.17 -2.19 12.56 -37.13 -0.47 -2.65 16 3 C 0.02 0.25 2.53 -93.37 -0.24 0.01 16 4 C -0.12 -1.65 5.32 -26.62 -0.14 -1.79 16 5 C 0.11 1.71 6.44 -3.71 -0.02 1.68 16 6 N -0.62 -10.99 2.97 -174.03 -0.52 -11.51 16 7 C 0.58 13.25 6.37 -12.52 -0.08 13.17 16 8 O -0.53 -14.08 15.60 5.26 0.08 -14.00 16 9 C -0.24 -5.54 4.70 -104.37 -0.49 -6.03 16 10 C -0.04 -0.89 7.71 -39.22 -0.30 -1.19 16 11 C -0.25 -4.89 10.03 -39.37 -0.39 -5.28 16 12 C -0.06 -1.30 10.01 -39.60 -0.40 -1.69 16 13 C -0.24 -5.49 6.98 -38.89 -0.27 -5.76 16 14 C 0.12 3.06 5.17 -106.54 -0.55 2.51 16 15 C -0.41 -11.40 8.47 -37.81 -0.32 -11.72 16 16 H 0.09 2.77 7.44 -52.48 -0.39 2.38 16 17 C 0.08 2.20 5.47 -17.30 -0.09 2.11 16 18 N -0.80 -21.51 13.92 55.56 0.77 -20.74 16 19 Si 0.92 21.06 24.40 -169.99 -4.15 16.91 16 20 H -0.27 -5.83 6.68 56.52 0.38 -5.46 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.24 -5.70 6.65 56.52 0.38 -5.33 16 23 C 0.11 1.60 5.52 -3.71 -0.02 1.58 16 24 C -0.13 -1.66 5.32 -26.61 -0.14 -1.80 16 25 H 0.21 1.66 7.80 -54.09 -0.42 1.24 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.60 6.99 -51.93 -0.36 1.23 16 31 H 0.10 1.67 7.67 -52.48 -0.40 1.26 16 32 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.10 2.40 4.38 -52.49 -0.23 2.17 16 35 H 0.29 7.01 8.29 -40.82 -0.34 6.67 16 36 H 0.10 1.65 5.32 -51.93 -0.28 1.37 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 320.15 15.07 4.82 4.82 Total: -1.00 -30.52 320.15 -7.42 -37.94 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.07 Total: 5.36 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -3.36 Total: -18.78 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.26 Total: -32.25 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.15 Total: 16.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.52 -7.42 -37.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869082602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.056 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds