Wall clock time and date at job start Tue Mar 31 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 110.01272 * 186.54025 * 3 2 1 5 5 C 1.34780 * 119.99887 * 58.61254 * 4 3 2 6 6 O 1.21583 * 120.00301 * 359.97438 * 5 4 3 7 7 C 1.47647 * 119.99702 * 179.97438 * 5 4 3 8 8 C 1.40012 * 119.89016 * 179.97438 * 7 5 4 9 9 C 1.36323 * 120.10430 * 180.02562 * 8 7 5 10 10 C 1.40888 * 119.89305 * 359.97438 * 9 8 7 11 11 C 1.41106 * 120.10460 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00034 * 335.04987 * 11 10 9 13 13 C 1.40227 * 119.99776 * 155.04675 * 11 10 9 14 14 N 1.30648 * 120.00364 * 342.49711 * 13 11 10 15 15 Si 1.86797 * 119.99901 * 162.49680 * 13 11 10 16 16 H 1.48506 * 109.46961 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47403 * 119.99958 * 15 13 11 18 18 H 1.48503 * 109.47061 * 240.00194 * 15 13 11 19 19 C 1.40892 * 119.79162 * 0.27029 * 10 9 8 20 20 C 1.36319 * 119.89030 * 359.48846 * 19 10 9 21 21 C 1.54263 * 110.07441 * 307.95542 * 3 2 1 22 22 C 1.54890 * 104.19375 * 95.70099 * 21 3 2 23 23 C 1.54890 * 102.74908 * 37.93901 * 22 21 3 24 24 C 1.53878 * 110.03367 * 65.15290 * 3 2 1 25 25 H 4.41739 * 5.46474 * 179.97438 * 4 1 2 26 26 H 0.96998 * 120.00272 * 238.61193 * 4 3 2 27 27 H 1.08000 * 119.95512 * 0.02562 * 8 7 5 28 28 H 1.07998 * 120.05457 * 179.97438 * 9 8 7 29 29 H 0.96994 * 119.99967 * 179.97438 * 14 13 11 30 30 H 1.07998 * 120.05758 * 179.72595 * 19 10 9 31 31 H 1.07996 * 119.94905 * 180.20761 * 20 19 10 32 32 H 1.09001 * 110.48889 * 214.37703 * 21 3 2 33 33 H 1.08996 * 110.48862 * 337.02220 * 21 3 2 34 34 H 1.08999 * 110.75530 * 279.62960 * 22 21 3 35 35 H 1.09000 * 110.75821 * 156.25757 * 22 21 3 36 36 H 1.09000 * 110.48905 * 203.37710 * 23 22 21 37 37 H 1.09003 * 110.48514 * 80.73617 * 23 22 21 38 38 H 1.09000 * 110.02875 * 359.95047 * 24 3 2 39 39 H 1.09000 * 110.03076 * 121.37693 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1468 1.3685 0.1568 5 6 2.8059 2.0906 1.2426 6 8 2.0824 1.6070 2.0917 7 6 3.3110 3.4689 1.4008 8 6 2.9550 4.2172 2.5294 9 6 3.4185 5.4904 2.6796 10 6 4.2575 6.0528 1.6973 11 6 4.7393 7.3704 1.8481 12 1 4.1916 8.0800 2.4503 13 6 5.9294 7.7583 1.2160 14 7 6.7641 6.8518 0.7819 15 14 6.3215 9.5712 0.9947 16 1 5.2232 10.3889 1.5696 17 1 7.5932 9.8914 1.6915 18 1 6.4599 9.8746 -0.4524 19 6 4.6087 5.2976 0.5610 20 6 4.1443 4.0235 0.4218 21 6 3.1759 -0.8903 1.1425 22 6 3.4470 -2.2562 0.4644 23 6 4.0054 -1.8454 -0.9208 24 6 3.1735 -0.6066 -1.3118 25 1 -1.0502 -0.0004 -0.0002 26 1 3.7237 1.7544 -0.5208 27 1 2.3122 3.7852 3.2821 28 1 3.1431 6.0670 3.5502 29 1 7.5871 7.1201 0.3443 30 1 5.2479 5.7260 -0.1968 31 1 4.4157 3.4426 -0.4472 32 1 4.0982 -0.4778 1.5515 33 1 2.4240 -0.9952 1.9245 34 1 2.5227 -2.8235 0.3553 35 1 4.1874 -2.8261 1.0258 36 1 3.8589 -2.6473 -1.6443 37 1 5.0617 -1.5871 -0.8449 38 1 2.3394 -0.9025 -1.9481 39 1 3.8020 0.1164 -1.8318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882533903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:21 Heat of formation + Delta-G solvation = 24.013553 kcal Electronic energy + Delta-G solvation = -21246.857233 eV Core-core repulsion = 18119.821587 eV Total energy + Delta-G solvation = -3127.035646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.85994 -37.97305 -36.74924 -33.86583 -33.40548 -32.21435 -30.17102 -29.44636 -28.84975 -27.57982 -25.61264 -22.16698 -21.39679 -20.98152 -20.80881 -19.67499 -17.67435 -17.49871 -16.83248 -16.04126 -15.42964 -15.23328 -14.57500 -14.09853 -13.97120 -13.66589 -13.51341 -13.20928 -12.79063 -12.24977 -12.09720 -11.93158 -11.82390 -11.38975 -11.35119 -11.27932 -11.24205 -11.05224 -10.92863 -10.74407 -10.63179 -10.27337 -10.01736 -9.91463 -9.56271 -9.36166 -8.84265 -8.70952 -7.72240 -7.54131 -7.03738 -4.60453 2.23367 2.88328 2.92083 2.94962 3.00512 3.03404 3.07841 3.74019 3.86216 4.00477 4.38567 4.54986 4.58513 4.66322 4.97497 5.39126 5.42779 5.51502 5.56975 5.62020 5.72302 5.79639 5.85348 5.98093 6.04202 6.05562 6.21851 6.31801 6.34537 6.38064 6.76620 6.82783 6.95588 7.06823 7.13276 7.43604 7.64985 7.78940 7.86050 7.88387 8.07096 8.24940 8.39851 8.63127 8.75151 9.11212 9.88598 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029208 B = 0.003656 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.395211 B = 7656.961150 C = 8123.126905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.285 3.715 4 N -0.733 5.733 5 C 0.572 3.428 6 O -0.562 6.562 7 C -0.283 4.283 8 C -0.022 4.022 9 C -0.239 4.239 10 C 0.129 3.871 11 C -0.443 4.443 12 H 0.085 0.915 13 C 0.075 3.925 14 N -0.773 5.773 15 Si 0.913 3.087 16 H -0.257 1.257 17 H -0.272 1.272 18 H -0.269 1.269 19 C -0.178 4.178 20 C -0.063 4.063 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.122 4.122 25 H 0.214 0.786 26 H 0.399 0.601 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.286 0.714 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.944 -10.648 -5.772 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.167 4.167 3 C 0.199 3.801 4 N -0.387 5.387 5 C 0.367 3.633 6 O -0.442 6.442 7 C -0.287 4.287 8 C -0.041 4.041 9 C -0.258 4.258 10 C 0.126 3.874 11 C -0.471 4.471 12 H 0.103 0.897 13 C -0.146 4.146 14 N -0.396 5.396 15 Si 0.736 3.264 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.194 1.194 19 C -0.197 4.197 20 C -0.082 4.082 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.159 4.159 25 H 0.231 0.769 26 H 0.235 0.765 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.189 -11.004 -5.281 12.400 hybrid contribution 0.359 1.065 -0.467 1.217 sum -1.830 -9.939 -5.747 11.626 Atomic orbital electron populations 1.24747 0.95708 0.99891 1.01825 1.23002 0.94021 1.00399 0.99282 1.17591 0.83352 0.83538 0.95657 1.46254 1.53461 1.13597 1.25343 1.18603 0.78869 0.85819 0.80030 1.90639 1.38571 1.72605 1.42423 1.18909 1.13414 0.94270 1.02117 1.20360 0.95444 0.93542 0.94774 1.20722 1.08621 0.95875 1.00586 1.17789 0.88030 0.92355 0.89267 1.19874 1.05248 0.96704 1.25297 0.89699 1.26092 0.95441 1.00394 0.92712 1.69748 1.07704 1.35945 1.26206 0.86178 0.79363 0.81681 0.79168 1.18066 1.19670 1.19387 1.20966 1.04883 0.94523 0.99308 1.20470 0.95988 0.95690 0.96068 1.22709 1.01848 0.93822 0.97127 1.22529 1.00865 0.97056 0.95871 1.22347 0.99636 0.96811 0.97147 1.22436 1.00111 0.97941 0.95455 0.76932 0.76451 0.88146 0.88408 0.90308 0.86256 0.89382 0.90363 0.90423 0.91437 0.91154 0.91301 0.91058 0.90498 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 19.25 29.55 0.57 -2.52 16 2 C -0.17 -2.75 10.26 -37.12 -0.38 -3.13 16 3 C 0.29 4.32 0.87 -133.49 -0.12 4.20 16 4 N -0.73 -12.65 5.01 -50.16 -0.25 -12.90 16 5 C 0.57 12.31 7.21 -12.42 -0.09 12.22 16 6 O -0.56 -13.38 14.55 5.29 0.08 -13.30 16 7 C -0.28 -6.52 5.89 -104.73 -0.62 -7.13 16 8 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 9 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 10 C 0.13 3.29 5.57 -106.80 -0.59 2.70 16 11 C -0.44 -11.06 9.04 -37.75 -0.34 -11.41 16 12 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 13 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 14 N -0.77 -18.47 10.97 55.56 0.61 -17.86 16 15 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 16 16 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 17 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 19 C -0.18 -4.35 8.63 -39.27 -0.34 -4.69 16 20 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 21 C -0.12 -1.70 4.95 -25.07 -0.12 -1.83 16 22 C -0.13 -1.35 6.91 -24.74 -0.17 -1.52 16 23 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 24 C -0.12 -1.38 6.22 -25.61 -0.16 -1.54 16 25 H 0.21 2.41 7.80 -54.08 -0.42 1.99 16 26 H 0.40 6.08 6.07 -40.82 -0.25 5.83 16 27 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 28 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.29 6.11 8.29 -40.82 -0.34 5.78 16 30 H 0.12 2.96 6.19 -52.49 -0.32 2.63 16 31 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 32 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 33 H 0.08 1.28 7.69 -51.93 -0.40 0.88 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.83 7.66 -51.93 -0.40 0.43 16 39 H 0.08 0.80 7.44 -51.93 -0.39 0.41 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -29.13 328.68 -8.40 -37.52 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -4.99 Total: 12.59 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -3.76 Total: -23.23 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.36 Total: -30.76 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.13 -8.40 -37.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882533903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.538 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds