Wall clock time and date at job start Tue Mar 31 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 110.01272 * 186.54025 * 3 2 1 5 5 C 1.34780 * 119.99887 * 58.61254 * 4 3 2 6 6 O 1.21583 * 120.00301 * 359.97438 * 5 4 3 7 7 C 1.47647 * 119.99702 * 179.97438 * 5 4 3 8 8 C 1.40012 * 119.89016 * 179.97438 * 7 5 4 9 9 C 1.36323 * 120.10430 * 180.02562 * 8 7 5 10 10 C 1.40888 * 119.89305 * 359.97438 * 9 8 7 11 11 C 1.41106 * 120.10460 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00034 * 335.04987 * 11 10 9 13 13 C 1.40227 * 119.99776 * 155.04675 * 11 10 9 14 14 N 1.30648 * 120.00364 * 342.49711 * 13 11 10 15 15 Si 1.86797 * 119.99901 * 162.49680 * 13 11 10 16 16 H 1.48506 * 109.46961 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47403 * 119.99958 * 15 13 11 18 18 H 1.48503 * 109.47061 * 240.00194 * 15 13 11 19 19 C 1.40892 * 119.79162 * 0.27029 * 10 9 8 20 20 C 1.36319 * 119.89030 * 359.48846 * 19 10 9 21 21 C 1.54263 * 110.07441 * 307.95542 * 3 2 1 22 22 C 1.54890 * 104.19375 * 95.70099 * 21 3 2 23 23 C 1.54890 * 102.74908 * 37.93901 * 22 21 3 24 24 C 1.53878 * 110.03367 * 65.15290 * 3 2 1 25 25 H 4.41739 * 5.46474 * 179.97438 * 4 1 2 26 26 H 0.96998 * 120.00272 * 238.61193 * 4 3 2 27 27 H 1.08000 * 119.95512 * 0.02562 * 8 7 5 28 28 H 1.07998 * 120.05457 * 179.97438 * 9 8 7 29 29 H 0.96994 * 119.99967 * 179.97438 * 14 13 11 30 30 H 1.07998 * 120.05758 * 179.72595 * 19 10 9 31 31 H 1.07996 * 119.94905 * 180.20761 * 20 19 10 32 32 H 1.09001 * 110.48889 * 214.37703 * 21 3 2 33 33 H 1.08996 * 110.48862 * 337.02220 * 21 3 2 34 34 H 1.08999 * 110.75530 * 279.62960 * 22 21 3 35 35 H 1.09000 * 110.75821 * 156.25757 * 22 21 3 36 36 H 1.09000 * 110.48905 * 203.37710 * 23 22 21 37 37 H 1.09003 * 110.48514 * 80.73617 * 23 22 21 38 38 H 1.09000 * 110.02875 * 359.95047 * 24 3 2 39 39 H 1.09000 * 110.03076 * 121.37693 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1468 1.3685 0.1568 5 6 2.8059 2.0906 1.2426 6 8 2.0824 1.6070 2.0917 7 6 3.3110 3.4689 1.4008 8 6 2.9550 4.2172 2.5294 9 6 3.4185 5.4904 2.6796 10 6 4.2575 6.0528 1.6973 11 6 4.7393 7.3704 1.8481 12 1 4.1916 8.0800 2.4503 13 6 5.9294 7.7583 1.2160 14 7 6.7641 6.8518 0.7819 15 14 6.3215 9.5712 0.9947 16 1 5.2232 10.3889 1.5696 17 1 7.5932 9.8914 1.6915 18 1 6.4599 9.8746 -0.4524 19 6 4.6087 5.2976 0.5610 20 6 4.1443 4.0235 0.4218 21 6 3.1759 -0.8903 1.1425 22 6 3.4470 -2.2562 0.4644 23 6 4.0054 -1.8454 -0.9208 24 6 3.1735 -0.6066 -1.3118 25 1 -1.0502 -0.0004 -0.0002 26 1 3.7237 1.7544 -0.5208 27 1 2.3122 3.7852 3.2821 28 1 3.1431 6.0670 3.5502 29 1 7.5871 7.1201 0.3443 30 1 5.2479 5.7260 -0.1968 31 1 4.4157 3.4426 -0.4472 32 1 4.0982 -0.4778 1.5515 33 1 2.4240 -0.9952 1.9245 34 1 2.5227 -2.8235 0.3553 35 1 4.1874 -2.8261 1.0258 36 1 3.8589 -2.6473 -1.6443 37 1 5.0617 -1.5871 -0.8449 38 1 2.3394 -0.9025 -1.9481 39 1 3.8020 0.1164 -1.8318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882533903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:20 Heat of formation + Delta-G solvation = 8.804781 kcal Electronic energy + Delta-G solvation = -21247.516735 eV Core-core repulsion = 18119.821587 eV Total energy + Delta-G solvation = -3127.695148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27870 -39.52492 -38.37012 -35.67020 -34.74435 -33.49206 -31.92494 -31.30965 -29.81528 -28.87368 -27.29521 -23.85839 -22.86743 -22.43347 -21.90403 -21.19483 -19.38391 -18.92326 -18.40845 -17.31718 -17.06029 -16.33737 -15.85648 -15.74758 -15.64805 -15.14775 -14.97625 -14.48370 -14.46499 -13.94618 -13.68096 -13.42872 -13.13895 -12.89989 -12.84914 -12.63035 -12.43935 -12.33125 -12.09287 -12.03814 -11.75974 -11.61311 -11.43738 -11.36558 -11.13139 -11.08887 -10.53265 -10.18657 -9.58817 -9.42058 -8.79806 -6.49140 0.43723 1.13520 1.38625 1.42053 1.55360 1.63240 1.88261 2.12861 2.18131 2.64272 2.78062 3.33964 3.57488 3.66523 3.71699 4.08696 4.28802 4.33144 4.41974 4.42947 4.48294 4.57050 4.72641 4.83864 4.85520 4.90953 5.02573 5.03098 5.14575 5.16511 5.22623 5.24816 5.29507 5.42579 5.57191 5.64836 5.81025 5.93587 5.98530 6.21827 6.53077 6.67424 6.72534 6.76530 6.88066 7.46906 8.15997 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029208 B = 0.003656 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.395211 B = 7656.961150 C = 8123.126905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C 0.273 3.727 4 N -0.718 5.718 5 C 0.572 3.428 6 O -0.590 6.590 7 C -0.293 4.293 8 C -0.034 4.034 9 C -0.253 4.253 10 C 0.102 3.898 11 C -0.475 4.475 12 H 0.084 0.916 13 C 0.039 3.961 14 N -0.798 5.798 15 Si 0.987 3.013 16 H -0.258 1.258 17 H -0.263 1.263 18 H -0.259 1.259 19 C -0.196 4.196 20 C -0.054 4.054 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.117 4.117 25 H 0.244 0.756 26 H 0.409 0.591 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.297 0.703 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -11.278 -7.667 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.208 4.208 3 C 0.188 3.812 4 N -0.371 5.371 5 C 0.366 3.634 6 O -0.473 6.473 7 C -0.297 4.297 8 C -0.053 4.053 9 C -0.273 4.273 10 C 0.099 3.901 11 C -0.502 4.502 12 H 0.102 0.898 13 C -0.180 4.180 14 N -0.422 5.422 15 Si 0.807 3.193 16 H -0.182 1.182 17 H -0.188 1.188 18 H -0.183 1.183 19 C -0.215 4.215 20 C -0.073 4.073 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.155 4.155 25 H 0.260 0.740 26 H 0.247 0.753 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.484 -11.670 -7.205 13.795 hybrid contribution 0.086 1.174 0.153 1.187 sum -1.398 -10.495 -7.053 12.722 Atomic orbital electron populations 1.25643 0.96799 0.98428 1.00832 1.23567 0.95096 1.01749 1.00364 1.18013 0.83160 0.82114 0.97932 1.46131 1.52588 1.14383 1.23991 1.18420 0.78660 0.85505 0.80852 1.90619 1.39895 1.73079 1.43751 1.19209 1.13308 0.95289 1.01930 1.20494 0.95699 0.93645 0.95439 1.20852 1.09158 0.96308 1.00943 1.18136 0.88758 0.93236 0.89992 1.20132 1.06469 0.96797 1.26784 0.89781 1.26911 0.94514 1.04894 0.91685 1.69759 1.08260 1.38099 1.26042 0.85070 0.79113 0.75644 0.79454 1.18157 1.18799 1.18350 1.21006 1.05819 0.95539 0.99183 1.20728 0.94625 0.95132 0.96773 1.22669 1.00114 0.96281 0.96662 1.22512 1.01692 0.94836 0.96475 1.22363 0.99577 0.96634 0.96626 1.22470 1.00801 0.98766 0.93420 0.73968 0.75270 0.88192 0.87903 0.89146 0.86771 0.85821 0.91783 0.93315 0.90958 0.89690 0.88785 0.90274 0.89663 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.82 19.25 74.32 1.43 -4.39 16 2 C -0.21 -6.69 10.26 31.13 0.32 -6.37 16 3 C 0.27 7.98 0.87 2.52 0.00 7.98 16 4 N -0.72 -24.14 5.01 -430.88 -2.16 -26.29 16 5 C 0.57 24.73 7.21 86.73 0.63 25.35 16 6 O -0.59 -28.69 14.55 -3.98 -0.06 -28.75 16 7 C -0.29 -13.64 5.89 -19.93 -0.12 -13.75 16 8 C -0.03 -1.65 9.52 22.25 0.21 -1.44 16 9 C -0.25 -12.79 9.73 22.47 0.22 -12.57 16 10 C 0.10 5.35 5.57 -21.28 -0.12 5.23 16 11 C -0.47 -24.13 9.04 23.46 0.21 -23.92 16 12 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 13 C 0.04 1.81 5.14 85.35 0.44 2.25 16 14 N -0.80 -38.00 10.97 21.87 0.24 -37.76 16 15 Si 0.99 34.74 29.59 68.60 2.03 36.77 16 16 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 17 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 18 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 19 C -0.20 -9.73 8.63 22.47 0.19 -9.53 16 20 C -0.05 -2.37 9.47 22.25 0.21 -2.16 16 21 C -0.12 -3.43 4.95 31.67 0.16 -3.27 16 22 C -0.12 -2.29 6.91 31.89 0.22 -2.07 16 23 C -0.11 -1.82 6.83 31.67 0.22 -1.60 16 24 C -0.12 -2.33 6.22 31.32 0.19 -2.13 16 25 H 0.24 5.02 7.80 -4.41 -0.03 4.98 16 26 H 0.41 11.74 6.07 -92.71 -0.56 11.17 16 27 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 28 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 29 H 0.30 12.49 8.29 -92.71 -0.77 11.72 16 30 H 0.11 5.71 6.19 -2.91 -0.02 5.69 16 31 H 0.12 4.43 6.37 -2.91 -0.02 4.41 16 32 H 0.06 1.99 8.05 -2.39 -0.02 1.97 16 33 H 0.05 1.66 7.69 -2.39 -0.02 1.64 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.58 7.66 -2.39 -0.02 1.56 16 39 H 0.09 1.57 7.44 -2.39 -0.02 1.56 16 Total: -1.00 -64.47 328.68 4.97 -59.50 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: 0.50 Total: 38.95 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 4.42 Total: -42.41 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -1.92 Total: -64.05 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.06 Total: -28.75 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -64.47 4.97 -59.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882533903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.304 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds