Wall clock time and date at job start Tue Mar 31 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 110.02003 * 297.34229 * 3 2 1 5 5 C 1.34771 * 120.00112 * 58.61316 * 4 3 2 6 6 O 1.21552 * 119.99883 * 359.97438 * 5 4 3 7 7 C 1.47882 * 120.00033 * 180.02562 * 5 4 3 8 8 C 1.39914 * 120.02801 * 359.97438 * 7 5 4 9 9 C 1.38331 * 120.36059 * 179.97438 * 8 7 5 10 10 C 1.37743 * 120.41147 * 0.25792 * 9 8 7 11 11 C 1.40757 * 120.04147 * 359.49221 * 10 9 8 12 12 C 1.41436 * 120.18044 * 180.25547 * 11 10 9 13 13 H 1.07999 * 119.99557 * 24.69854 * 12 11 10 14 14 C 1.39936 * 120.00191 * 204.70643 * 12 11 10 15 15 N 1.30827 * 120.00030 * 17.87099 * 14 12 11 16 16 Si 1.86798 * 120.00059 * 197.88086 * 14 12 11 17 17 H 1.48500 * 109.47503 * 59.99210 * 16 14 12 18 18 H 1.48494 * 109.46815 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46801 * 299.99141 * 16 14 12 20 20 C 1.38997 * 120.02239 * 179.97438 * 7 5 4 21 21 C 1.54267 * 110.07574 * 58.76137 * 3 2 1 22 22 C 1.54887 * 104.19598 * 95.69102 * 21 3 2 23 23 C 1.54891 * 102.74829 * 37.94877 * 22 21 3 24 24 C 1.53873 * 110.03147 * 175.94858 * 3 2 1 25 25 H 4.41740 * 5.46589 * 179.97438 * 4 1 2 26 26 H 0.97003 * 119.99870 * 238.61027 * 4 3 2 27 27 H 1.08001 * 119.81914 * 0.02562 * 8 7 5 28 28 H 1.08004 * 119.79148 * 179.97438 * 9 8 7 29 29 H 1.08006 * 119.98052 * 179.71650 * 10 9 8 30 30 H 0.96994 * 120.00502 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.20442 * 0.02562 * 20 7 5 32 32 H 1.08996 * 110.49416 * 214.37125 * 21 3 2 33 33 H 1.09001 * 110.48229 * 337.01866 * 21 3 2 34 34 H 1.09003 * 110.76046 * 279.62775 * 22 21 3 35 35 H 1.09005 * 110.91524 * 156.33192 * 22 21 3 36 36 H 1.09006 * 110.48380 * 203.37805 * 23 22 21 37 37 H 1.08994 * 110.49073 * 80.73395 * 23 22 21 38 38 H 1.09005 * 110.02981 * 359.95673 * 24 3 2 39 39 H 1.08998 * 110.03607 * 121.38033 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1478 -0.6313 1.2227 5 6 2.8079 -1.9029 1.5123 6 8 2.0846 -2.5253 0.7593 7 6 3.3140 -2.5407 2.7469 8 6 4.1462 -1.8247 3.6143 9 6 4.6231 -2.4143 4.7712 10 6 4.2889 -3.7144 5.0801 11 6 3.4486 -4.4488 4.2223 12 6 3.0992 -5.7821 4.5393 13 1 3.1179 -6.1155 5.5664 14 6 2.7293 -6.6693 3.5223 15 7 3.0317 -6.4008 2.2781 16 14 1.8037 -8.2368 3.9411 17 1 0.5190 -7.8919 4.6011 18 1 1.5313 -8.9984 2.6958 19 1 2.6249 -9.0662 4.8594 20 6 2.9634 -3.8519 3.0463 21 6 3.1758 -0.7505 -1.2389 22 6 3.4456 0.3686 -2.2751 23 6 4.0037 1.5179 -1.3994 24 6 3.1724 1.4429 -0.1021 25 1 -1.0499 0.0001 0.0003 26 1 3.7247 -0.1346 1.8238 27 1 4.4170 -0.8058 3.3798 28 1 5.2652 -1.8533 5.4341 29 1 4.6689 -4.1694 5.9829 30 1 2.7751 -7.0155 1.5730 31 1 2.3216 -4.4086 2.3794 32 1 4.0986 -1.2788 -0.9991 33 1 2.4241 -1.4449 -1.6143 34 1 2.5208 0.6713 -2.7664 35 1 4.1847 0.0488 -3.0097 36 1 3.8562 2.4790 -1.8921 37 1 5.0601 1.3560 -1.1855 38 1 2.3378 2.1423 -0.1525 39 1 3.8012 1.6728 0.7580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882535685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:23 Heat of formation + Delta-G solvation = 28.188255 kcal Electronic energy + Delta-G solvation = -21526.540576 eV Core-core repulsion = 18399.685958 eV Total energy + Delta-G solvation = -3126.854618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.93185 -37.97086 -36.69449 -33.81811 -33.36867 -32.22406 -30.13155 -29.42604 -28.86242 -27.39969 -25.26593 -22.66863 -21.39740 -20.98456 -20.84635 -19.53854 -17.79381 -17.61245 -16.33350 -15.92709 -15.29267 -15.05146 -14.63065 -14.57814 -13.97215 -13.66438 -13.52774 -13.19585 -12.73349 -12.48170 -12.19200 -11.86123 -11.65762 -11.38004 -11.27759 -11.14861 -11.08118 -11.03578 -10.76102 -10.71780 -10.50082 -10.28645 -9.99939 -9.91056 -9.69111 -9.20249 -8.89600 -8.76887 -7.62762 -7.51603 -6.79779 -4.41212 2.22376 2.82338 2.87622 3.07066 3.07634 3.09386 3.17047 3.85823 3.91494 3.93819 4.39563 4.53426 4.60693 4.67970 4.95725 5.38110 5.40995 5.49013 5.58058 5.62380 5.69251 5.76223 5.82001 5.88215 5.98412 6.08107 6.20577 6.27765 6.35481 6.36801 6.72190 6.90232 6.99354 7.02932 7.21762 7.38703 7.70539 7.76525 7.87581 7.93264 8.10572 8.19961 8.50920 8.80539 8.84011 8.99186 10.14887 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.004489 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.081101 B = 6236.133605 C = 6888.783934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.285 3.715 4 N -0.728 5.728 5 C 0.564 3.436 6 O -0.532 6.532 7 C -0.127 4.127 8 C -0.219 4.219 9 C -0.097 4.097 10 C -0.213 4.213 11 C 0.099 3.901 12 C -0.461 4.461 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.783 5.783 16 Si 0.910 3.090 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.092 4.092 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.121 4.121 25 H 0.215 0.785 26 H 0.400 0.600 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.285 0.715 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 12.426 -5.778 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.171 4.171 3 C 0.199 3.801 4 N -0.383 5.383 5 C 0.355 3.645 6 O -0.409 6.409 7 C -0.130 4.130 8 C -0.239 4.239 9 C -0.116 4.116 10 C -0.233 4.233 11 C 0.097 3.903 12 C -0.490 4.490 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.407 5.407 16 Si 0.734 3.266 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.113 4.113 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.159 4.159 25 H 0.231 0.769 26 H 0.237 0.763 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.097 11.858 -6.564 13.554 hybrid contribution -0.308 -0.514 0.518 0.792 sum -0.212 11.344 -6.046 12.856 Atomic orbital electron populations 1.24767 0.95729 1.01378 0.99774 1.22955 0.93990 0.99565 1.00627 1.17613 0.83424 0.92781 0.86325 1.46293 1.53194 1.14497 1.24328 1.18861 0.79240 0.80380 0.86059 1.90702 1.36603 1.63021 1.50566 1.19477 1.02933 0.96111 0.94500 1.20338 1.07095 0.98398 0.98079 1.20428 0.99631 0.95271 0.96239 1.21098 1.04112 0.95467 1.02581 1.17595 0.88902 0.92995 0.90844 1.19562 1.40041 0.94588 0.94797 0.90110 1.25958 0.93853 1.00286 0.94434 1.69779 1.33697 1.36270 1.00979 0.86331 0.80773 0.80588 0.78878 1.18718 1.20212 1.18939 1.21642 0.99627 0.91445 0.98544 1.22722 1.01992 0.97610 0.93336 1.22523 1.00935 0.95324 0.97501 1.22349 0.99597 0.98909 0.95077 1.22432 1.00139 0.94102 0.99192 0.76862 0.76269 0.89287 0.88917 0.88634 0.90383 0.84844 0.90277 0.90272 0.91413 0.91095 0.91273 0.91069 0.90428 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.07 19.25 29.55 0.57 -2.50 16 2 C -0.17 -2.86 10.26 -37.13 -0.38 -3.24 16 3 C 0.28 4.32 0.87 -133.49 -0.12 4.20 16 4 N -0.73 -12.52 5.01 -50.10 -0.25 -12.77 16 5 C 0.56 12.54 7.22 -12.32 -0.09 12.45 16 6 O -0.53 -13.42 14.56 5.32 0.08 -13.35 16 7 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 8 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 9 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 10 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 11 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 12 C -0.46 -12.21 9.05 -37.73 -0.34 -12.55 16 13 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 14 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 15 N -0.78 -20.91 10.95 55.55 0.61 -20.30 16 16 Si 0.91 18.93 29.60 -169.99 -5.03 13.90 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 C -0.09 -2.49 8.24 -38.44 -0.32 -2.81 16 21 C -0.12 -1.76 4.95 -25.07 -0.12 -1.89 16 22 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 23 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 24 C -0.12 -1.33 6.22 -25.61 -0.16 -1.49 16 25 H 0.21 2.49 7.80 -54.10 -0.42 2.07 16 26 H 0.40 5.88 6.09 -40.82 -0.25 5.63 16 27 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 28 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 29 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.29 7.02 8.30 -40.82 -0.34 6.68 16 31 H 0.13 3.90 5.74 -52.49 -0.30 3.60 16 32 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 33 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.81 7.66 -51.93 -0.40 0.42 16 39 H 0.08 0.75 7.44 -51.93 -0.39 0.37 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -30.67 328.89 -8.38 -39.05 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -4.99 Total: 11.96 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -3.75 Total: -23.44 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.36 Total: -33.07 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.67 -8.38 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882535685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.238 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds