Wall clock time and date at job start Tue Mar 31 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 110.02003 * 297.34229 * 3 2 1 5 5 C 1.34771 * 120.00112 * 58.61316 * 4 3 2 6 6 O 1.21552 * 119.99883 * 359.97438 * 5 4 3 7 7 C 1.47882 * 120.00033 * 180.02562 * 5 4 3 8 8 C 1.39914 * 120.02801 * 359.97438 * 7 5 4 9 9 C 1.38331 * 120.36059 * 179.97438 * 8 7 5 10 10 C 1.37743 * 120.41147 * 0.25792 * 9 8 7 11 11 C 1.40757 * 120.04147 * 359.49221 * 10 9 8 12 12 C 1.41436 * 120.18044 * 180.25547 * 11 10 9 13 13 H 1.07999 * 119.99557 * 24.69854 * 12 11 10 14 14 C 1.39936 * 120.00191 * 204.70643 * 12 11 10 15 15 N 1.30827 * 120.00030 * 17.87099 * 14 12 11 16 16 Si 1.86798 * 120.00059 * 197.88086 * 14 12 11 17 17 H 1.48500 * 109.47503 * 59.99210 * 16 14 12 18 18 H 1.48494 * 109.46815 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46801 * 299.99141 * 16 14 12 20 20 C 1.38997 * 120.02239 * 179.97438 * 7 5 4 21 21 C 1.54267 * 110.07574 * 58.76137 * 3 2 1 22 22 C 1.54887 * 104.19598 * 95.69102 * 21 3 2 23 23 C 1.54891 * 102.74829 * 37.94877 * 22 21 3 24 24 C 1.53873 * 110.03147 * 175.94858 * 3 2 1 25 25 H 4.41740 * 5.46589 * 179.97438 * 4 1 2 26 26 H 0.97003 * 119.99870 * 238.61027 * 4 3 2 27 27 H 1.08001 * 119.81914 * 0.02562 * 8 7 5 28 28 H 1.08004 * 119.79148 * 179.97438 * 9 8 7 29 29 H 1.08006 * 119.98052 * 179.71650 * 10 9 8 30 30 H 0.96994 * 120.00502 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.20442 * 0.02562 * 20 7 5 32 32 H 1.08996 * 110.49416 * 214.37125 * 21 3 2 33 33 H 1.09001 * 110.48229 * 337.01866 * 21 3 2 34 34 H 1.09003 * 110.76046 * 279.62775 * 22 21 3 35 35 H 1.09005 * 110.91524 * 156.33192 * 22 21 3 36 36 H 1.09006 * 110.48380 * 203.37805 * 23 22 21 37 37 H 1.08994 * 110.49073 * 80.73395 * 23 22 21 38 38 H 1.09005 * 110.02981 * 359.95673 * 24 3 2 39 39 H 1.08998 * 110.03607 * 121.38033 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1478 -0.6313 1.2227 5 6 2.8079 -1.9029 1.5123 6 8 2.0846 -2.5253 0.7593 7 6 3.3140 -2.5407 2.7469 8 6 4.1462 -1.8247 3.6143 9 6 4.6231 -2.4143 4.7712 10 6 4.2889 -3.7144 5.0801 11 6 3.4486 -4.4488 4.2223 12 6 3.0992 -5.7821 4.5393 13 1 3.1179 -6.1155 5.5664 14 6 2.7293 -6.6693 3.5223 15 7 3.0317 -6.4008 2.2781 16 14 1.8037 -8.2368 3.9411 17 1 0.5190 -7.8919 4.6011 18 1 1.5313 -8.9984 2.6958 19 1 2.6249 -9.0662 4.8594 20 6 2.9634 -3.8519 3.0463 21 6 3.1758 -0.7505 -1.2389 22 6 3.4456 0.3686 -2.2751 23 6 4.0037 1.5179 -1.3994 24 6 3.1724 1.4429 -0.1021 25 1 -1.0499 0.0001 0.0003 26 1 3.7247 -0.1346 1.8238 27 1 4.4170 -0.8058 3.3798 28 1 5.2652 -1.8533 5.4341 29 1 4.6689 -4.1694 5.9829 30 1 2.7751 -7.0155 1.5730 31 1 2.3216 -4.4086 2.3794 32 1 4.0986 -1.2788 -0.9991 33 1 2.4241 -1.4449 -1.6143 34 1 2.5208 0.6713 -2.7664 35 1 4.1847 0.0488 -3.0097 36 1 3.8562 2.4790 -1.8921 37 1 5.0601 1.3560 -1.1855 38 1 2.3378 2.1423 -0.1525 39 1 3.8012 1.6728 0.7580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882535685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:22 Heat of formation + Delta-G solvation = 10.533850 kcal Electronic energy + Delta-G solvation = -21527.306128 eV Core-core repulsion = 18399.685958 eV Total energy + Delta-G solvation = -3127.620170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38871 -39.49313 -38.37473 -35.66367 -34.76838 -33.53685 -31.91217 -31.27696 -29.83183 -28.62910 -27.15048 -24.36072 -22.85788 -22.47513 -21.92112 -21.10192 -19.50217 -19.00950 -17.94079 -17.26333 -16.89238 -16.50046 -16.26017 -15.87414 -15.61973 -15.17946 -14.99227 -14.48052 -14.46773 -14.26685 -13.51760 -13.38048 -12.94870 -12.93023 -12.81518 -12.57345 -12.38877 -12.21759 -12.11039 -12.08664 -11.86575 -11.63161 -11.52952 -11.43534 -11.12427 -11.07801 -10.62021 -10.27596 -9.49527 -9.39783 -8.68106 -6.39873 0.37684 1.00184 1.34368 1.46286 1.48921 1.56712 1.84286 2.09991 2.17919 2.52448 2.77623 3.30439 3.55182 3.65665 3.70830 3.99451 4.18773 4.38713 4.41274 4.46272 4.52699 4.58831 4.71707 4.81894 4.84245 4.89354 5.02217 5.07120 5.15530 5.17765 5.19746 5.23895 5.30251 5.41988 5.50117 5.56379 5.85482 5.91616 6.04085 6.27528 6.49834 6.64588 6.69283 6.86311 6.93547 7.33455 8.28442 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.004489 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.081101 B = 6236.133605 C = 6888.783934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C 0.274 3.726 4 N -0.707 5.707 5 C 0.561 3.439 6 O -0.574 6.574 7 C -0.139 4.139 8 C -0.199 4.199 9 C -0.095 4.095 10 C -0.218 4.218 11 C 0.068 3.932 12 C -0.500 4.500 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.826 5.826 16 Si 0.982 3.018 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.250 1.250 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.114 4.114 25 H 0.243 0.757 26 H 0.414 0.586 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.109 0.891 30 H 0.286 0.714 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 15.264 -5.197 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.210 4.210 3 C 0.188 3.812 4 N -0.361 5.361 5 C 0.351 3.649 6 O -0.454 6.454 7 C -0.142 4.142 8 C -0.218 4.218 9 C -0.112 4.112 10 C -0.238 4.238 11 C 0.065 3.935 12 C -0.529 4.529 13 H 0.103 0.897 14 C -0.185 4.185 15 N -0.451 5.451 16 Si 0.802 3.198 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.174 1.174 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.152 4.152 25 H 0.259 0.741 26 H 0.254 0.746 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.240 14.755 -5.968 15.964 hybrid contribution -0.617 -1.214 0.341 1.404 sum 0.623 13.541 -5.627 14.677 Atomic orbital electron populations 1.25654 0.96859 1.00575 0.98553 1.23577 0.95157 1.00459 1.01771 1.18058 0.83060 0.95161 0.84914 1.46111 1.52165 1.12700 1.25136 1.18764 0.79022 0.81808 0.85350 1.90680 1.38558 1.64467 1.51655 1.19810 1.03157 0.95513 0.95752 1.20870 1.04225 1.00037 0.96693 1.20931 0.99202 0.94431 0.96683 1.21422 1.03261 0.96658 1.02425 1.17941 0.90092 0.93800 0.91629 1.19858 1.42340 0.95389 0.95307 0.89727 1.26854 0.94067 1.03603 0.93944 1.69887 1.35412 1.37744 1.02078 0.85256 0.79274 0.76418 0.78846 1.18539 1.19685 1.17420 1.21442 1.01470 0.93127 0.99251 1.22686 1.00029 0.98399 0.94913 1.22510 1.01716 0.94375 0.96942 1.22368 0.99702 0.99238 0.93761 1.22471 1.00926 0.90803 1.00993 0.74055 0.74600 0.84490 0.84197 0.87296 0.90349 0.88480 0.91798 0.93852 0.91088 0.89735 0.88632 0.89965 0.89530 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.07 19.25 74.32 1.43 -4.64 16 2 C -0.21 -6.94 10.26 31.12 0.32 -6.62 16 3 C 0.27 8.01 0.87 2.52 0.00 8.01 16 4 N -0.71 -23.45 5.01 -430.69 -2.16 -25.61 16 5 C 0.56 25.41 7.22 86.80 0.63 26.04 16 6 O -0.57 -30.58 14.56 -3.88 -0.06 -30.64 16 7 C -0.14 -6.73 5.87 -20.14 -0.12 -6.84 16 8 C -0.20 -7.87 9.55 22.70 0.22 -7.65 16 9 C -0.09 -3.76 10.01 22.17 0.22 -3.54 16 10 C -0.22 -10.29 9.78 22.77 0.22 -10.06 16 11 C 0.07 3.74 5.57 -21.32 -0.12 3.62 16 12 C -0.50 -27.67 9.05 23.47 0.21 -27.45 16 13 H 0.08 4.40 7.91 -2.91 -0.02 4.37 16 14 C 0.03 1.61 5.14 85.25 0.44 2.05 16 15 N -0.83 -47.01 10.95 21.82 0.24 -46.78 16 16 Si 0.98 40.30 29.60 68.60 2.03 42.33 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 20 C -0.13 -7.52 8.24 23.01 0.19 -7.33 16 21 C -0.12 -3.67 4.95 31.67 0.16 -3.51 16 22 C -0.12 -2.35 6.91 31.89 0.22 -2.13 16 23 C -0.11 -1.70 6.83 31.67 0.22 -1.48 16 24 C -0.11 -2.14 6.22 31.32 0.19 -1.94 16 25 H 0.24 5.38 7.80 -4.42 -0.03 5.34 16 26 H 0.41 10.85 6.09 -92.71 -0.56 10.29 16 27 H 0.14 4.05 6.38 -2.91 -0.02 4.04 16 28 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.29 15.07 8.30 -92.71 -0.77 14.31 16 31 H 0.10 6.16 5.74 -2.91 -0.02 6.15 16 32 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 33 H 0.04 1.58 7.69 -2.39 -0.02 1.56 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.51 7.66 -2.38 -0.02 1.49 16 39 H 0.10 1.44 7.44 -2.39 -0.02 1.43 16 Total: -1.00 -73.09 328.89 4.98 -68.11 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.50 Total: 36.06 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 4.43 Total: -43.48 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -1.92 Total: -72.38 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.06 Total: -30.64 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -73.09 4.98 -68.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882535685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.641 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds