Wall clock time and date at job start Tue Mar 31 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47582 * 81.47294 * 3 2 1 5 5 N 1.46497 * 112.84799 * 303.65070 * 4 3 2 6 6 C 1.34773 * 120.00224 * 284.79818 * 5 4 3 7 7 O 1.21596 * 119.99763 * 4.90978 * 6 5 4 8 8 C 1.47634 * 120.00474 * 184.91613 * 6 5 4 9 9 C 1.40014 * 119.89971 * 179.97438 * 8 6 5 10 10 C 1.36319 * 120.11006 * 179.97438 * 9 8 6 11 11 C 1.40888 * 119.88894 * 0.02562 * 10 9 8 12 12 C 1.41111 * 120.10125 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99721 * 325.53504 * 12 11 10 14 14 C 1.40220 * 120.00402 * 145.53389 * 12 11 10 15 15 N 1.30653 * 119.99505 * 3.80383 * 14 12 11 16 16 Si 1.86795 * 120.00391 * 183.80553 * 14 12 11 17 17 H 1.48495 * 109.47110 * 59.99694 * 16 14 12 18 18 H 1.48498 * 109.47355 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46913 * 299.99582 * 16 14 12 20 20 C 1.40882 * 119.79378 * 0.25025 * 11 10 9 21 21 C 1.36313 * 119.89332 * 359.48598 * 20 11 10 22 22 C 1.53784 * 113.68589 * 74.91548 * 4 3 2 23 23 C 1.53781 * 87.07788 * 139.99594 * 22 4 3 24 24 C 1.53771 * 113.61602 * 172.44884 * 4 3 2 25 25 H 4.44650 * 5.63362 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47034 * 321.47323 * 3 2 1 27 27 H 1.08998 * 109.47000 * 201.47755 * 3 2 1 28 28 H 0.97005 * 119.99898 * 104.80044 * 5 4 3 29 29 H 1.08000 * 119.94568 * 359.97438 * 9 8 6 30 30 H 1.08000 * 120.05077 * 179.97438 * 10 9 8 31 31 H 0.97003 * 119.99752 * 180.02562 * 15 14 12 32 32 H 1.08005 * 120.05277 * 179.73171 * 20 11 10 33 33 H 1.08006 * 119.94732 * 180.25617 * 21 20 11 34 34 H 1.09009 * 113.61303 * 254.53988 * 22 4 3 35 35 H 1.08995 * 113.61484 * 25.44257 * 22 4 3 36 36 H 1.09000 * 113.60951 * 220.01924 * 23 22 4 37 37 H 1.08999 * 113.61157 * 89.11881 * 23 22 4 38 38 H 1.08997 * 113.61963 * 334.48748 * 24 4 3 39 39 H 1.09007 * 113.61561 * 105.39190 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1561 -0.2130 -1.4265 5 7 2.6410 -1.4411 -2.0369 6 6 3.1379 -2.6377 -1.6660 7 8 3.9489 -2.7057 -0.7625 8 6 2.6978 -3.8661 -2.3566 9 6 3.2158 -5.1080 -1.9698 10 6 2.8120 -6.2450 -2.6043 11 6 1.8722 -6.1688 -3.6511 12 6 1.4515 -7.3429 -4.3113 13 1 2.1456 -8.1569 -4.4602 14 6 0.1324 -7.4528 -4.7741 15 7 -0.6860 -6.4407 -4.6606 16 14 -0.4547 -9.0460 -5.5526 17 1 -0.3252 -10.1533 -4.5717 18 1 -1.8769 -8.9052 -5.9560 19 1 0.3714 -9.3458 -6.7496 20 6 1.3582 -4.9163 -4.0407 21 6 1.7639 -3.7854 -3.3967 22 6 3.0160 1.0272 -2.3250 23 6 4.3972 0.6700 -2.8992 24 6 4.6782 -0.0463 -1.5678 25 1 -1.0500 0.0002 -0.0001 26 1 3.0096 -0.8032 0.6401 27 1 3.0088 0.9571 0.3763 28 1 1.9424 -1.3930 -2.7081 29 1 3.9365 -5.1653 -1.1675 30 1 3.2125 -7.2024 -2.3054 31 1 -1.5987 -6.5168 -4.9804 32 1 0.6408 -4.8526 -4.8455 33 1 1.3673 -2.8252 -3.6919 34 1 2.2076 0.9504 -3.0522 35 1 3.0023 1.9669 -1.7730 36 1 5.0354 1.5365 -3.0721 37 1 4.3532 -0.0023 -3.7560 38 1 5.1191 0.6000 -0.8088 39 1 5.2120 -0.9896 -1.6837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886794099.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:49 Heat of formation + Delta-G solvation = 48.022004 kcal Electronic energy + Delta-G solvation = -21367.872517 eV Core-core repulsion = 18241.877956 eV Total energy + Delta-G solvation = -3125.994562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27466 -38.11299 -36.74558 -33.77520 -33.66688 -32.63452 -30.07669 -29.44372 -28.84557 -25.91554 -25.72692 -23.37116 -21.96902 -20.96845 -19.85623 -18.84645 -17.90886 -17.49504 -16.84220 -15.67441 -15.42949 -15.28222 -14.35851 -14.06051 -13.94646 -13.84983 -13.73494 -13.14186 -13.05044 -12.64004 -12.33636 -12.08012 -11.84039 -11.54198 -11.46375 -11.20846 -11.08927 -10.96781 -10.89780 -10.56271 -10.35510 -10.05402 -10.01445 -9.89865 -9.54397 -9.40685 -8.89094 -8.53944 -7.72215 -7.41123 -6.86236 -4.62182 2.20953 2.96110 2.97549 2.98739 3.00673 3.01754 3.03813 3.68314 3.78853 3.90459 4.35621 4.55601 4.62813 4.76338 4.93666 4.95593 5.48931 5.54057 5.59500 5.65992 5.71271 5.85967 5.94316 6.01693 6.05230 6.08006 6.23147 6.27005 6.30577 6.37416 6.76859 6.88942 6.98541 7.10077 7.16469 7.47464 7.63436 7.80173 7.80966 7.89292 8.10854 8.22985 8.44655 8.67970 8.76533 9.06277 10.02649 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.003877 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.645735 B = 7221.267536 C = 7528.082557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.169 4.169 3 C -0.016 4.016 4 C 0.164 3.836 5 N -0.717 5.717 6 C 0.576 3.424 7 O -0.568 6.568 8 C -0.271 4.271 9 C -0.030 4.030 10 C -0.229 4.229 11 C 0.126 3.874 12 C -0.451 4.451 13 H 0.081 0.919 14 C 0.070 3.930 15 N -0.794 5.794 16 Si 0.920 3.080 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.166 4.166 21 C -0.069 4.069 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.137 4.137 25 H 0.213 0.787 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.399 0.601 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.283 0.717 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 11.610 1.703 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.169 4.169 3 C -0.053 4.053 4 C 0.076 3.924 5 N -0.370 5.370 6 C 0.371 3.629 7 O -0.450 6.450 8 C -0.275 4.275 9 C -0.050 4.050 10 C -0.248 4.248 11 C 0.123 3.877 12 C -0.480 4.480 13 H 0.100 0.900 14 C -0.148 4.148 15 N -0.419 5.419 16 Si 0.744 3.256 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.186 4.186 21 C -0.088 4.088 22 C -0.176 4.176 23 C -0.177 4.177 24 C -0.175 4.175 25 H 0.230 0.770 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.235 0.765 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.467 11.632 2.264 12.104 hybrid contribution -1.122 -0.679 -0.587 1.437 sum 1.344 10.953 1.676 11.162 Atomic orbital electron populations 1.24790 0.95855 1.01993 1.01302 1.22972 0.94319 0.99644 0.99992 1.19093 0.85149 1.03115 0.97972 1.21026 0.94742 0.85534 0.91079 1.45577 1.42338 1.04487 1.44607 1.18536 0.79657 0.82975 0.81762 1.90618 1.35878 1.87132 1.31345 1.19017 1.09999 0.92078 1.06408 1.20382 0.96185 0.91528 0.96865 1.20860 1.06686 0.96540 1.00724 1.17841 0.88400 0.93024 0.88405 1.19732 0.96018 1.01299 1.30944 0.90047 1.26035 0.96830 0.98434 0.93472 1.69672 1.06550 1.30738 1.34913 0.86163 0.78082 0.81305 0.80042 1.18787 1.20163 1.18740 1.21257 1.03741 0.91113 1.02448 1.20562 0.95719 0.97286 0.95215 1.23233 0.98274 0.97124 0.98950 1.22826 0.96613 1.00351 0.97896 1.23195 0.95298 1.01814 0.97181 0.76971 0.88448 0.89245 0.76540 0.88025 0.88292 0.90533 0.85204 0.89341 0.91092 0.89090 0.91414 0.89980 0.89580 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.03 19.25 29.55 0.57 -2.46 16 2 C -0.17 -2.48 12.83 -37.13 -0.48 -2.96 16 3 C -0.02 -0.21 5.15 -29.52 -0.15 -0.36 16 4 C 0.16 2.26 0.54 -131.01 -0.07 2.19 16 5 N -0.72 -11.91 4.65 -47.85 -0.22 -12.13 16 6 C 0.58 11.88 7.28 -12.43 -0.09 11.79 16 7 O -0.57 -12.75 14.22 5.28 0.08 -12.67 16 8 C -0.27 -6.12 5.89 -104.73 -0.62 -6.73 16 9 C -0.03 -0.71 9.52 -39.61 -0.38 -1.09 16 10 C -0.23 -5.53 9.73 -39.27 -0.38 -5.91 16 11 C 0.13 3.23 5.55 -106.80 -0.59 2.64 16 12 C -0.45 -11.35 9.03 -37.75 -0.34 -11.69 16 13 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 14 C 0.07 1.67 5.42 -17.31 -0.09 1.58 16 15 N -0.79 -19.38 10.61 55.56 0.59 -18.79 16 16 Si 0.92 17.78 29.56 -169.99 -5.03 12.75 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 18 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 20 C -0.17 -4.09 8.61 -39.28 -0.34 -4.43 16 21 C -0.07 -1.52 9.47 -39.61 -0.38 -1.90 16 22 C -0.14 -1.50 7.26 -25.92 -0.19 -1.69 16 23 C -0.14 -1.55 7.99 -25.92 -0.21 -1.76 16 24 C -0.14 -1.79 6.88 -25.93 -0.18 -1.97 16 25 H 0.21 2.19 7.80 -54.09 -0.42 1.77 16 26 H 0.10 1.55 7.49 -51.93 -0.39 1.16 16 27 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 28 H 0.40 6.23 6.76 -40.82 -0.28 5.95 16 29 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 30 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 32 H 0.13 3.27 6.15 -52.48 -0.32 2.95 16 33 H 0.09 1.68 6.38 -52.48 -0.34 1.35 16 34 H 0.07 0.76 8.13 -51.92 -0.42 0.34 16 35 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.08 1.36 6.73 -51.93 -0.35 1.01 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -28.19 332.61 -8.47 -36.66 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -4.99 Total: 13.92 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -3.91 Total: -24.74 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.37 Total: -30.92 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.19 -8.47 -36.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886794099.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.685 kcal (2) G-P(sol) polarization free energy of solvation -28.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds