Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52991 * 109.46937 * 80.90102 * 3 2 1 5 5 N 1.46902 * 109.54684 * 304.36654 * 4 3 2 6 6 C 1.46905 * 110.99868 * 305.13753 * 5 4 3 7 7 C 1.52995 * 109.46957 * 184.07577 * 6 5 4 8 8 C 1.52998 * 109.46878 * 179.97438 * 7 6 5 9 9 S 1.81005 * 109.47188 * 179.97438 * 8 7 6 10 10 C 1.76198 * 100.00052 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00459 * 359.97438 * 10 9 8 12 12 C 1.38801 * 119.99799 * 180.02562 * 10 9 8 13 13 N 1.31629 * 120.00471 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99967 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46882 * 89.99789 * 14 12 10 16 16 H 1.48501 * 109.47496 * 209.99928 * 14 12 10 17 17 H 1.48502 * 109.47207 * 330.00242 * 14 12 10 18 18 C 1.53172 * 109.55016 * 64.54768 * 4 3 2 19 19 C 1.53284 * 109.07067 * 176.85189 * 18 4 3 20 20 O 1.42903 * 109.45663 * 302.44673 * 19 18 4 21 21 C 1.42901 * 114.10230 * 61.15438 * 20 19 18 22 22 C 1.53090 * 109.41342 * 298.84627 * 21 20 19 23 23 H 4.44639 * 5.63355 * 180.02562 * 4 1 2 24 24 H 1.08996 * 109.47185 * 320.89281 * 3 2 1 25 25 H 1.08998 * 109.46441 * 200.89474 * 3 2 1 26 26 H 1.00899 * 110.99947 * 69.08305 * 5 4 3 27 27 H 1.08998 * 109.46531 * 304.07243 * 6 5 4 28 28 H 1.08997 * 109.47439 * 64.06967 * 6 5 4 29 29 H 1.09008 * 109.47165 * 299.99188 * 7 6 5 30 30 H 1.08997 * 109.47543 * 59.99455 * 7 6 5 31 31 H 1.08998 * 109.47358 * 299.99441 * 8 7 6 32 32 H 1.09002 * 109.47137 * 59.99878 * 8 7 6 33 33 H 0.96994 * 120.00628 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.52042 * 296.84090 * 18 4 3 35 35 H 1.09004 * 109.52266 * 57.02695 * 18 4 3 36 36 H 1.08996 * 109.46411 * 182.44704 * 19 18 4 37 37 H 1.08997 * 109.46635 * 62.44425 * 19 18 4 38 38 H 1.08997 * 109.48297 * 178.85884 * 21 20 19 39 39 H 1.09004 * 109.49073 * 58.82745 * 21 20 19 40 40 H 1.09005 * 109.51994 * 297.69275 * 22 21 20 41 41 H 1.09007 * 109.57532 * 177.54607 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.2272 -1.4243 5 7 2.5837 -1.4703 -1.9583 6 6 2.8632 -2.6041 -1.0670 7 6 2.3418 -3.8939 -1.7036 8 6 2.6336 -5.0748 -0.7756 9 16 2.0161 -6.6006 -1.5284 10 6 2.4713 -7.7618 -0.2838 11 1 2.9777 -7.4259 0.6090 12 6 2.1799 -9.1085 -0.4512 13 7 1.5631 -9.5182 -1.5395 14 14 2.6630 -10.3397 0.8679 15 1 1.5548 -10.4766 1.8469 16 1 2.9342 -11.6577 0.2397 17 1 3.8842 -9.8635 1.5661 18 6 2.7415 0.9504 -2.3117 19 6 3.3244 0.7495 -3.7151 20 8 4.7457 0.6294 -3.6275 21 6 5.1905 -0.4824 -2.8477 22 6 4.6842 -0.3313 -1.4109 23 1 -1.0500 0.0002 -0.0001 24 1 3.0097 -0.7966 0.6482 25 1 3.0088 0.9609 0.3665 26 1 1.5923 -1.3723 -2.1185 27 1 3.9387 -2.6856 -0.9093 28 1 2.3668 -2.4448 -0.1098 29 1 1.2663 -3.8123 -1.8613 30 1 2.8383 -4.0531 -2.6608 31 1 3.7091 -5.1562 -0.6183 32 1 2.1373 -4.9157 0.1818 33 1 1.3598 -10.4593 -1.6567 34 1 1.6541 0.9974 -2.3700 35 1 3.1249 1.8786 -1.8879 36 1 3.0698 1.6053 -4.3401 37 1 2.9094 -0.1577 -4.1543 38 1 6.2800 -0.5140 -2.8479 39 1 4.8000 -1.4060 -3.2753 40 1 5.1069 0.5710 -0.9688 41 1 4.9851 -1.1995 -0.8244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887124644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -12.019894 kcal Electronic energy + Delta-G solvation = -20073.024113 eV Core-core repulsion = 17079.869891 eV Total energy + Delta-G solvation = -2993.154222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28406 -37.13843 -34.38592 -32.85086 -32.42390 -31.26631 -30.37953 -28.45952 -25.77357 -24.97078 -23.81134 -23.05634 -21.00467 -19.43755 -18.16728 -17.44241 -16.31947 -16.07955 -15.98147 -15.41804 -15.14686 -14.80379 -14.74029 -14.29103 -13.91593 -13.75340 -13.12848 -12.93520 -12.78393 -12.53309 -12.43678 -12.04854 -11.56442 -11.49257 -11.27085 -11.06869 -10.86363 -10.71514 -10.66232 -10.61943 -10.45424 -10.26346 -10.22607 -9.64538 -9.52300 -9.05495 -8.44425 -8.29136 -6.51880 -6.22305 -3.92397 2.59918 2.66447 3.21411 3.22223 3.29067 3.55156 3.83903 4.03279 4.12469 4.23393 4.46999 4.63362 4.73262 4.91382 5.13568 5.18632 5.20750 5.28651 5.31139 5.36832 5.41947 5.46542 5.52779 5.59799 5.62262 5.68435 5.76433 5.83228 5.84728 5.92638 5.93637 6.01268 6.18056 6.34128 6.60429 6.74234 6.99539 7.16034 7.29935 7.43654 7.60782 8.36947 9.23934 10.85896 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.003284 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.913464 B = 8524.177877 C = 8988.096343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C -0.044 4.044 4 C 0.121 3.879 5 N -0.673 5.673 6 C 0.058 3.942 7 C -0.093 4.093 8 C -0.111 4.111 9 S -0.132 6.132 10 C -0.517 4.517 11 H 0.072 0.928 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.142 4.142 19 C 0.068 3.932 20 O -0.387 6.387 21 C 0.068 3.932 22 C -0.142 4.142 23 H 0.217 0.783 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.343 0.657 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.267 0.733 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 22.022 0.226 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C -0.082 4.082 4 C 0.029 3.971 5 N -0.304 5.304 6 C -0.072 4.072 7 C -0.132 4.132 8 C -0.261 4.261 9 S 0.096 5.904 10 C -0.665 4.665 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.180 4.180 19 C -0.009 4.009 20 O -0.306 6.306 21 C -0.008 4.008 22 C -0.180 4.180 23 H 0.233 0.767 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.162 0.838 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.820 21.677 -1.379 21.903 hybrid contribution -0.227 -0.671 3.111 3.191 sum 2.593 21.006 1.732 21.236 Atomic orbital electron populations 1.24930 0.95956 1.00954 1.00299 1.22896 0.94304 1.00581 1.00846 1.19554 0.85476 1.03530 0.99631 1.20920 0.94797 0.90635 0.90750 1.60676 1.19698 1.02388 1.47687 1.22114 1.01008 0.90158 0.93964 1.21205 1.01238 0.91549 0.99162 1.23214 1.02686 0.99083 1.01080 1.84636 1.77820 0.97019 1.30912 1.22693 1.44290 0.93566 1.05939 0.91030 1.25010 0.94783 0.97655 0.96317 1.70020 1.38646 1.16208 1.25660 0.86177 0.78924 0.79744 0.80741 1.20304 1.20732 1.19692 1.22285 1.01388 0.97378 0.96929 1.22491 0.81244 1.01844 0.95321 1.87869 1.21620 1.49336 1.71780 1.22462 0.98778 0.89999 0.89586 1.22246 0.93736 1.02862 0.99145 0.76653 0.89111 0.89427 0.83828 0.90874 0.94989 0.91970 0.90845 0.92200 0.92482 0.92314 0.90898 0.90860 0.89684 0.91800 0.89532 0.91422 0.90946 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 19.25 29.55 0.57 -1.46 16 2 C -0.19 -1.97 10.84 -37.12 -0.40 -2.37 16 3 C -0.04 -0.41 4.23 -29.52 -0.12 -0.53 16 4 C 0.12 1.13 0.31 -131.42 -0.04 1.09 16 5 N -0.67 -7.43 4.70 -99.78 -0.47 -7.90 16 6 C 0.06 0.74 4.77 -3.82 -0.02 0.72 16 7 C -0.09 -1.50 5.51 -26.73 -0.15 -1.64 16 8 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 9 S -0.13 -3.48 21.44 -107.50 -2.30 -5.78 16 10 C -0.52 -14.92 9.50 30.94 0.29 -14.63 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 14 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C -0.14 -1.25 4.77 -26.50 -0.13 -1.38 16 19 C 0.07 0.65 6.69 37.30 0.25 0.90 16 20 O -0.39 -4.42 10.77 -35.23 -0.38 -4.80 16 21 C 0.07 0.70 6.68 37.20 0.25 0.95 16 22 C -0.14 -1.30 4.77 -26.59 -0.13 -1.42 16 23 H 0.22 1.52 7.80 -54.09 -0.42 1.10 16 24 H 0.09 0.88 6.70 -51.93 -0.35 0.53 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.34 3.88 7.84 -39.29 -0.31 3.57 16 27 H 0.07 0.91 6.22 -51.93 -0.32 0.59 16 28 H 0.03 0.42 6.28 -51.93 -0.33 0.09 16 29 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 32 H 0.06 1.15 8.14 -51.91 -0.42 0.73 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.78 7.75 -51.93 -0.40 0.37 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.71 6.33 -51.93 -0.33 0.38 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -31.50 343.04 -8.38 -39.88 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.60 Total: 2.11 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 0.49 Total: -19.87 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.26 Total: -33.29 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.38 Total: -4.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.50 -8.38 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887124644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.858 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds