Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52991 * 109.46937 * 80.90102 * 3 2 1 5 5 N 1.46902 * 109.54684 * 304.36654 * 4 3 2 6 6 C 1.46905 * 110.99868 * 305.13753 * 5 4 3 7 7 C 1.52995 * 109.46957 * 184.07577 * 6 5 4 8 8 C 1.52998 * 109.46878 * 179.97438 * 7 6 5 9 9 S 1.81005 * 109.47188 * 179.97438 * 8 7 6 10 10 C 1.76198 * 100.00052 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00459 * 359.97438 * 10 9 8 12 12 C 1.38801 * 119.99799 * 180.02562 * 10 9 8 13 13 N 1.31629 * 120.00471 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99967 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46882 * 89.99789 * 14 12 10 16 16 H 1.48501 * 109.47496 * 209.99928 * 14 12 10 17 17 H 1.48502 * 109.47207 * 330.00242 * 14 12 10 18 18 C 1.53172 * 109.55016 * 64.54768 * 4 3 2 19 19 C 1.53284 * 109.07067 * 176.85189 * 18 4 3 20 20 O 1.42903 * 109.45663 * 302.44673 * 19 18 4 21 21 C 1.42901 * 114.10230 * 61.15438 * 20 19 18 22 22 C 1.53090 * 109.41342 * 298.84627 * 21 20 19 23 23 H 4.44639 * 5.63355 * 180.02562 * 4 1 2 24 24 H 1.08996 * 109.47185 * 320.89281 * 3 2 1 25 25 H 1.08998 * 109.46441 * 200.89474 * 3 2 1 26 26 H 1.00899 * 110.99947 * 69.08305 * 5 4 3 27 27 H 1.08998 * 109.46531 * 304.07243 * 6 5 4 28 28 H 1.08997 * 109.47439 * 64.06967 * 6 5 4 29 29 H 1.09008 * 109.47165 * 299.99188 * 7 6 5 30 30 H 1.08997 * 109.47543 * 59.99455 * 7 6 5 31 31 H 1.08998 * 109.47358 * 299.99441 * 8 7 6 32 32 H 1.09002 * 109.47137 * 59.99878 * 8 7 6 33 33 H 0.96994 * 120.00628 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.52042 * 296.84090 * 18 4 3 35 35 H 1.09004 * 109.52266 * 57.02695 * 18 4 3 36 36 H 1.08996 * 109.46411 * 182.44704 * 19 18 4 37 37 H 1.08997 * 109.46635 * 62.44425 * 19 18 4 38 38 H 1.08997 * 109.48297 * 178.85884 * 21 20 19 39 39 H 1.09004 * 109.49073 * 58.82745 * 21 20 19 40 40 H 1.09005 * 109.51994 * 297.69275 * 22 21 20 41 41 H 1.09007 * 109.57532 * 177.54607 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.2272 -1.4243 5 7 2.5837 -1.4703 -1.9583 6 6 2.8632 -2.6041 -1.0670 7 6 2.3418 -3.8939 -1.7036 8 6 2.6336 -5.0748 -0.7756 9 16 2.0161 -6.6006 -1.5284 10 6 2.4713 -7.7618 -0.2838 11 1 2.9777 -7.4259 0.6090 12 6 2.1799 -9.1085 -0.4512 13 7 1.5631 -9.5182 -1.5395 14 14 2.6630 -10.3397 0.8679 15 1 1.5548 -10.4766 1.8469 16 1 2.9342 -11.6577 0.2397 17 1 3.8842 -9.8635 1.5661 18 6 2.7415 0.9504 -2.3117 19 6 3.3244 0.7495 -3.7151 20 8 4.7457 0.6294 -3.6275 21 6 5.1905 -0.4824 -2.8477 22 6 4.6842 -0.3313 -1.4109 23 1 -1.0500 0.0002 -0.0001 24 1 3.0097 -0.7966 0.6482 25 1 3.0088 0.9609 0.3665 26 1 1.5923 -1.3723 -2.1185 27 1 3.9387 -2.6856 -0.9093 28 1 2.3668 -2.4448 -0.1098 29 1 1.2663 -3.8123 -1.8613 30 1 2.8383 -4.0531 -2.6608 31 1 3.7091 -5.1562 -0.6183 32 1 2.1373 -4.9157 0.1818 33 1 1.3598 -10.4593 -1.6567 34 1 1.6541 0.9974 -2.3700 35 1 3.1249 1.8786 -1.8879 36 1 3.0698 1.6053 -4.3401 37 1 2.9094 -0.1577 -4.1543 38 1 6.2800 -0.5140 -2.8479 39 1 4.8000 -1.4060 -3.2753 40 1 5.1069 0.5710 -0.9688 41 1 4.9851 -1.1995 -0.8244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887124644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = -31.315446 kcal Electronic energy + Delta-G solvation = -20073.860831 eV Core-core repulsion = 17079.869891 eV Total energy + Delta-G solvation = -2993.990940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08111 -38.01347 -35.51695 -34.60729 -33.68157 -32.01654 -31.47390 -29.20573 -27.85509 -26.26344 -24.62172 -23.91972 -22.29006 -20.24201 -19.53968 -18.87584 -17.13022 -17.04583 -16.90242 -16.82137 -16.37110 -16.30223 -15.74825 -15.58679 -14.98300 -14.88317 -14.56474 -13.89064 -13.76028 -13.59236 -13.44073 -13.21900 -13.04579 -12.94577 -12.85096 -12.49193 -12.31539 -12.15976 -11.78774 -11.53348 -11.42601 -11.33681 -11.14939 -11.04125 -10.98898 -10.46453 -10.32155 -9.33242 -8.67122 -8.37864 -6.14246 1.30864 1.38778 1.48212 1.74224 1.83827 1.90552 2.27959 2.96343 3.05429 3.12828 3.34008 3.39429 3.74103 3.86846 3.98496 4.03262 4.18047 4.29439 4.31611 4.46105 4.49032 4.57516 4.60930 4.69735 4.74713 4.75577 4.82072 4.84428 4.89868 4.99867 5.10945 5.15207 5.17817 5.21485 5.29033 5.35819 5.38846 6.06411 6.17359 6.37252 6.39254 6.69040 7.04271 8.71603 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.003284 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.913464 B = 8524.177877 C = 8988.096343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.210 4.210 3 C -0.042 4.042 4 C 0.123 3.877 5 N -0.674 5.674 6 C 0.073 3.927 7 C -0.081 4.081 8 C -0.086 4.086 9 S -0.198 6.198 10 C -0.539 4.539 11 H 0.072 0.928 12 C 0.016 3.984 13 N -0.908 5.908 14 Si 0.994 3.006 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.262 1.262 18 C -0.135 4.135 19 C 0.065 3.935 20 O -0.402 6.402 21 C 0.067 3.933 22 C -0.139 4.139 23 H 0.237 0.763 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.342 0.658 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.271 0.729 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 23.108 1.557 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.210 4.210 3 C -0.080 4.080 4 C 0.032 3.968 5 N -0.305 5.305 6 C -0.057 4.057 7 C -0.120 4.120 8 C -0.235 4.235 9 S 0.030 5.970 10 C -0.687 4.687 11 H 0.090 0.910 12 C -0.189 4.189 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.187 1.187 18 C -0.173 4.173 19 C -0.011 4.011 20 O -0.321 6.321 21 C -0.010 4.010 22 C -0.177 4.177 23 H 0.253 0.747 24 H 0.105 0.895 25 H 0.121 0.879 26 H 0.160 0.840 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.417 22.782 -0.053 23.037 hybrid contribution -0.433 -0.911 2.648 2.834 sum 2.984 21.870 2.594 22.225 Atomic orbital electron populations 1.25607 0.96855 1.00425 0.99663 1.23308 0.95037 1.01155 1.01469 1.19560 0.84965 1.04279 0.99165 1.20952 0.94912 0.89865 0.91096 1.60628 1.19733 1.02742 1.47414 1.21861 1.01152 0.89011 0.93709 1.21082 1.01023 0.91726 0.98132 1.23135 1.02344 0.96739 1.01293 1.84656 1.78900 1.00845 1.32587 1.23045 1.44697 0.94647 1.06321 0.90971 1.26068 0.94368 0.99726 0.98764 1.70153 1.39609 1.16899 1.27747 0.85021 0.78985 0.76855 0.77582 1.19297 1.19869 1.18657 1.22228 1.01420 0.97399 0.96235 1.22575 0.80536 1.01925 0.96094 1.87852 1.22517 1.49590 1.72165 1.22500 0.99444 0.89027 0.90028 1.22237 0.93398 1.03628 0.98425 0.74674 0.89452 0.87858 0.83955 0.90144 0.94933 0.92464 0.91599 0.91825 0.92357 0.91952 0.90754 0.89878 0.88285 0.92975 0.88465 0.93120 0.89528 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.80 19.25 74.32 1.43 -2.37 16 2 C -0.21 -4.08 10.84 31.13 0.34 -3.74 16 3 C -0.04 -0.69 4.23 28.79 0.12 -0.56 16 4 C 0.12 2.09 0.31 3.64 0.00 2.09 16 5 N -0.67 -14.08 4.70 -469.61 -2.21 -16.29 16 6 C 0.07 1.77 4.77 86.30 0.41 2.19 16 7 C -0.08 -2.57 5.51 30.59 0.17 -2.40 16 8 C -0.09 -3.44 5.67 71.98 0.41 -3.03 16 9 S -0.20 -10.68 21.44 -56.49 -1.21 -11.89 16 10 C -0.54 -31.43 9.50 67.95 0.65 -30.78 16 11 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 12 C 0.02 0.90 5.49 84.86 0.47 1.36 16 13 N -0.91 -55.19 13.22 21.65 0.29 -54.91 16 14 Si 0.99 44.06 29.55 68.60 2.03 46.08 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 C -0.13 -2.13 4.77 30.75 0.15 -1.98 16 19 C 0.07 1.17 6.69 72.08 0.48 1.65 16 20 O -0.40 -8.65 10.77 -148.98 -1.60 -10.25 16 21 C 0.07 1.28 6.68 72.01 0.48 1.76 16 22 C -0.14 -2.26 4.77 30.68 0.15 -2.12 16 23 H 0.24 2.89 7.80 -4.42 -0.03 2.85 16 24 H 0.09 1.51 6.70 -2.39 -0.02 1.50 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.34 7.38 7.84 -89.69 -0.70 6.67 16 27 H 0.08 1.86 6.22 -2.39 -0.01 1.84 16 28 H 0.03 0.80 6.28 -2.39 -0.01 0.79 16 29 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 2.50 8.14 -2.40 -0.02 2.48 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.07 1.17 7.48 -2.39 -0.02 1.15 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.05 7.75 -2.39 -0.02 1.03 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.14 7.75 -2.38 -0.02 1.12 16 40 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.08 1.28 6.33 -2.38 -0.02 1.27 16 Total: -1.00 -67.75 343.04 2.84 -64.91 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.30 Total: 20.27 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 5.25 Total: -37.93 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.92 Total: -71.19 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.60 Total: -10.25 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.21 Total: -11.89 kcal Total: -67.75 2.84 -64.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887124644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.594 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds