Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99640 * 2 1 4 4 H 1.48500 * 109.46974 * 269.99858 * 3 2 1 5 5 H 1.48495 * 109.47271 * 30.00173 * 3 2 1 6 6 H 1.48507 * 109.46719 * 150.00145 * 3 2 1 7 7 C 1.37875 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47161 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99838 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00308 * 179.97438 * 11 10 9 14 14 C 1.47213 * 119.02543 * 358.10619 * 13 11 10 15 15 C 1.55113 * 115.96457 * 222.98325 * 14 13 11 16 16 C 1.49605 * 113.45075 * 43.98226 * 15 14 13 17 17 S 1.83018 * 110.33427 * 270.81910 * 16 15 14 18 18 C 1.74743 * 104.46260 * 74.35735 * 17 16 15 19 19 C 1.42848 * 119.03024 * 178.11738 * 13 11 10 20 20 H 1.08998 * 109.73274 * 203.88659 * 19 13 11 21 21 C 1.52991 * 109.77379 * 324.55680 * 19 13 11 22 22 C 1.52999 * 117.49996 * 240.72316 * 21 19 13 23 23 C 1.53005 * 117.49981 * 172.06063 * 21 19 13 24 24 H 0.97001 * 119.99715 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46774 * 60.00289 * 9 7 2 26 26 H 1.08997 * 109.46649 * 300.00358 * 9 7 2 27 27 H 1.09002 * 109.46596 * 59.99886 * 10 9 7 28 28 H 1.08997 * 109.47200 * 300.00525 * 10 9 7 29 29 H 1.08991 * 108.18465 * 101.29345 * 14 13 11 30 30 H 1.09001 * 108.02321 * 344.54148 * 14 13 11 31 31 H 1.09004 * 108.68503 * 282.95711 * 15 14 13 32 32 H 1.09001 * 108.58720 * 164.93774 * 15 14 13 33 33 H 1.08994 * 109.32669 * 150.55165 * 16 15 14 34 34 H 1.09002 * 109.32520 * 31.07705 * 16 15 14 35 35 H 1.09003 * 108.86384 * 178.12520 * 18 17 16 36 36 H 1.09003 * 108.78685 * 59.66559 * 18 17 16 37 37 H 1.09000 * 115.55119 * 26.39616 * 21 19 13 38 38 H 1.08998 * 117.50184 * 359.97438 * 22 21 19 39 39 H 1.09001 * 117.49851 * 145.02367 * 22 21 19 40 40 H 1.08997 * 117.49861 * 214.98615 * 23 21 19 41 41 H 1.08998 * 117.49374 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4920 -4.9671 -0.0012 12 8 0.2791 -4.9672 -0.0003 13 7 2.1658 -6.1343 -0.0026 14 6 3.6371 -6.1096 -0.0474 15 6 4.3047 -7.1335 -1.0023 16 6 3.6380 -7.2240 -2.3385 17 16 2.3052 -8.4777 -2.3007 18 6 1.0158 -7.7168 -1.3996 19 6 1.4314 -7.3588 0.0390 20 1 2.0587 -8.1505 0.4486 21 6 0.1849 -7.1854 0.9090 22 6 0.0584 -8.0747 2.1475 23 6 -0.8292 -8.3310 0.9268 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5570 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6039 -0.8922 29 1 4.0111 -6.2903 0.9603 30 1 3.9486 -5.1097 -0.3494 31 1 4.2802 -8.1168 -0.5324 32 1 5.3451 -6.8437 -1.1500 33 1 4.3750 -7.5036 -3.0912 34 1 3.2133 -6.2538 -2.5962 35 1 0.1640 -8.3959 -1.3616 36 1 0.7163 -6.8054 -1.9170 37 1 -0.2029 -6.1690 0.9775 38 1 0.8630 -8.7837 2.3423 39 1 -0.4130 -7.6436 3.0307 40 1 -1.8839 -8.0682 1.0075 41 1 -0.6084 -9.2080 0.3184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888486997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = -1.649868 kcal Electronic energy + Delta-G solvation = -21038.797704 eV Core-core repulsion = 18046.093159 eV Total energy + Delta-G solvation = -2992.704544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52485 -37.17732 -36.24097 -33.59680 -33.04291 -31.58254 -30.25112 -26.70756 -26.15714 -24.32315 -22.35385 -22.07150 -21.46934 -20.49866 -18.42159 -17.14800 -16.56839 -16.42522 -15.92564 -15.51582 -14.95310 -14.81922 -14.44916 -14.38745 -13.77248 -13.62544 -13.35508 -12.77489 -12.45733 -12.41652 -12.18465 -11.98434 -11.81153 -11.46495 -11.31121 -11.06561 -10.96935 -10.85755 -10.61968 -10.43572 -10.01259 -10.00250 -9.79085 -9.58459 -9.15173 -8.71060 -8.48956 -8.35846 -7.71736 -6.00032 -4.04688 1.66733 2.51621 2.99058 3.12997 3.30480 3.37023 3.39186 3.91329 4.40331 4.42955 4.62847 4.72505 4.87602 4.93191 5.03123 5.16908 5.25958 5.26898 5.32514 5.35203 5.36658 5.47621 5.61896 5.65332 5.68851 5.72580 5.84432 5.93676 5.97330 6.10936 6.14370 6.18564 6.52236 6.80911 7.06078 7.59844 7.69317 7.79980 8.01739 8.33696 8.64102 9.03276 9.59253 11.10827 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.004629 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.727210 B = 6047.415708 C = 6870.895841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.131 4.131 11 C 0.512 3.488 12 O -0.514 6.514 13 N -0.613 5.613 14 C 0.101 3.899 15 C -0.131 4.131 16 C -0.079 4.079 17 S -0.240 6.240 18 C -0.129 4.129 19 C 0.191 3.809 20 H 0.087 0.913 21 C -0.189 4.189 22 C -0.183 4.183 23 C -0.176 4.176 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.173 0.827 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 -18.073 -0.681 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.303 3.697 12 O -0.391 6.391 13 N -0.347 5.347 14 C -0.023 4.023 15 C -0.171 4.171 16 C -0.227 4.227 17 S -0.012 6.012 18 C -0.279 4.279 19 C 0.083 3.917 20 H 0.105 0.895 21 C -0.208 4.208 22 C -0.220 4.220 23 C -0.214 4.214 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.189 0.811 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.823 -18.946 -1.148 20.170 hybrid contribution 0.423 2.003 0.517 2.112 sum 7.245 -16.943 -0.631 18.438 Atomic orbital electron populations 1.69994 1.06059 1.26629 1.50082 1.25014 0.94809 0.99214 0.95236 0.86603 0.79794 0.83542 0.78091 1.20657 1.21191 1.19876 1.21194 0.92874 0.90984 1.51555 0.92667 1.18904 0.93124 0.89363 0.98591 1.21940 1.00795 0.92067 1.02246 1.21604 0.88369 0.85562 0.74121 1.90351 1.14343 1.86495 1.47873 1.47371 1.06267 1.05971 1.75099 1.22065 0.79350 1.01194 0.99642 1.21909 1.00032 1.00831 0.94322 1.22956 0.98329 1.00917 1.00533 1.85626 1.15208 1.28188 1.72151 1.23450 0.99971 1.05360 0.99094 1.20259 0.92055 0.86967 0.92399 0.89509 1.23959 0.97339 1.01323 0.98156 1.22998 1.02824 1.03440 0.92740 1.22856 0.96955 0.99869 1.01678 0.92919 0.95870 0.95791 0.90167 0.90294 0.91534 0.89125 0.90475 0.89358 0.87666 0.89538 0.86941 0.89380 0.81136 0.89537 0.89033 0.88852 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.55 3.98 -27.89 -0.11 -2.66 16 11 C 0.51 9.35 6.94 -10.99 -0.08 9.28 16 12 O -0.51 -11.10 12.28 5.55 0.07 -11.04 16 13 N -0.61 -8.60 2.42 -166.26 -0.40 -9.00 16 14 C 0.10 1.07 5.85 -2.53 -0.01 1.06 16 15 C -0.13 -1.11 5.49 -27.29 -0.15 -1.26 16 16 C -0.08 -0.78 6.03 35.48 0.21 -0.57 16 17 S -0.24 -2.81 21.48 -107.50 -2.31 -5.12 16 18 C -0.13 -1.70 5.28 37.66 0.20 -1.50 16 19 C 0.19 2.52 2.18 -69.35 -0.15 2.37 16 20 H 0.09 1.05 7.67 -51.93 -0.40 0.65 16 21 C -0.19 -2.75 4.70 -90.62 -0.43 -3.17 16 22 C -0.18 -2.23 10.18 -26.69 -0.27 -2.51 16 23 C -0.18 -2.16 9.44 -26.69 -0.25 -2.41 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 1.44 8.08 -51.93 -0.42 1.02 16 28 H 0.08 1.40 7.35 -51.93 -0.38 1.02 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.97 5.74 -51.93 -0.30 0.68 16 31 H 0.08 0.65 7.78 -51.93 -0.40 0.25 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.98 7.95 -51.93 -0.41 0.57 16 35 H 0.11 1.42 6.31 -49.20 -0.31 1.11 16 36 H 0.09 1.39 7.68 -49.11 -0.38 1.02 16 37 H 0.17 3.17 4.48 -56.04 -0.25 2.92 16 38 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.09 0.96 7.25 -51.93 -0.38 0.59 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -31.35 330.52 -10.06 -41.41 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.54 Total: 2.61 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.57 Total: -13.87 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.33 Total: -35.31 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.31 Total: -5.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.35 -10.06 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888486997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.761 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds