Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99702 * 2 1 4 4 H 1.48505 * 109.46882 * 239.99645 * 3 2 1 5 5 H 1.48501 * 109.47377 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47309 * 119.99742 * 3 2 1 7 7 C 1.38797 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99584 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99998 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72626 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.79472 * 305.81419 * 15 14 13 17 17 C 1.54931 * 109.80658 * 66.69243 * 15 14 13 18 18 C 1.52720 * 108.56955 * 176.55981 * 17 15 14 19 19 C 1.50797 * 108.95614 * 57.82176 * 18 17 15 20 20 C 1.31662 * 118.08633 * 255.14150 * 19 18 17 21 21 C 1.50518 * 116.92637 * 359.72240 * 20 19 18 22 22 C 1.49510 * 113.04244 * 84.57025 * 21 20 19 23 23 C 1.51391 * 117.51686 * 280.28446 * 22 21 20 24 24 H 0.97001 * 120.00629 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47654 * 60.00189 * 10 9 7 26 26 H 1.08998 * 109.47543 * 300.00143 * 10 9 7 27 27 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 29 29 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 30 30 H 1.08993 * 109.62199 * 296.28527 * 17 15 14 31 31 H 1.08995 * 109.61480 * 56.83351 * 17 15 14 32 32 H 1.08995 * 109.55535 * 297.97240 * 18 17 15 33 33 H 1.09001 * 109.55059 * 177.66431 * 18 17 15 34 34 H 1.07999 * 120.95984 * 75.15573 * 19 18 17 35 35 H 1.07995 * 121.53865 * 179.70390 * 20 19 18 36 36 H 1.09006 * 108.76705 * 323.65190 * 21 20 19 37 37 H 1.08998 * 108.67984 * 205.42576 * 21 20 19 38 38 H 1.09001 * 107.83659 * 158.25580 * 22 21 20 39 39 H 1.08999 * 107.80607 * 42.29099 * 22 21 20 40 40 H 1.08999 * 109.26853 * 313.53588 * 23 22 21 41 41 H 1.09001 * 109.23488 * 194.05698 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0030 12 8 0.7912 -5.5023 0.0030 13 7 2.8443 -6.3430 -0.0013 14 6 2.3306 -7.7151 -0.0011 15 6 3.5026 -8.6985 -0.0071 16 1 4.1677 -8.4749 -0.8413 17 6 4.2809 -8.5958 1.3285 18 6 5.3892 -9.6465 1.3276 19 6 6.2827 -9.4150 0.1350 20 6 6.1719 -10.2330 -0.8907 21 6 5.1576 -11.3390 -0.7739 22 6 3.7776 -10.9104 -1.1579 23 6 2.9745 -10.1380 -0.1330 24 1 -0.4851 0.8400 -0.0004 25 1 3.1239 -3.7309 0.8925 26 1 3.1252 -3.7317 -0.8874 27 1 3.8010 -6.1835 -0.0054 28 1 1.7253 -7.8762 0.8910 29 1 1.7186 -7.8741 -0.8889 30 1 4.7187 -7.6021 1.4216 31 1 3.6030 -8.7796 2.1621 32 1 4.9487 -10.6415 1.2658 33 1 5.9738 -9.5609 2.2436 34 1 6.9931 -8.6016 0.1226 35 1 6.7805 -10.1158 -1.7751 36 1 5.1409 -11.6922 0.2572 37 1 5.4620 -12.1616 -1.4209 38 1 3.2116 -11.8040 -1.4212 39 1 3.8571 -10.2939 -2.0533 40 1 3.0520 -10.6354 0.8338 41 1 1.9293 -10.1120 -0.4413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890051862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -39.860125 kcal Electronic energy + Delta-G solvation = -19702.408048 eV Core-core repulsion = 16708.046582 eV Total energy + Delta-G solvation = -2994.361465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.82331 -38.74818 -35.31555 -33.27450 -32.81059 -32.40962 -29.69531 -27.73456 -26.27418 -25.45435 -23.80072 -22.05557 -20.54257 -20.10372 -18.29282 -17.81931 -16.61516 -16.22299 -15.81319 -15.27950 -15.05762 -14.78891 -14.45566 -14.17405 -13.99166 -13.71623 -13.43588 -13.10163 -12.84140 -12.55355 -12.30311 -11.87594 -11.72552 -11.63273 -11.39345 -11.07055 -11.02797 -11.02472 -10.81132 -10.70423 -10.57385 -10.25268 -9.80197 -9.33968 -9.17425 -9.04547 -8.79109 -8.21420 -6.47747 -6.19722 -3.90162 1.96153 3.08595 3.16147 3.24640 3.28851 3.33780 3.78080 4.22389 4.31977 4.44697 4.57795 4.66246 4.77234 4.83611 5.06332 5.12691 5.15174 5.20218 5.27796 5.33255 5.36747 5.48763 5.55072 5.59495 5.65342 5.74282 5.80377 5.81986 5.87156 5.92220 5.95774 5.99545 6.07794 6.17000 6.24601 6.42490 6.62038 6.70566 7.60886 7.78197 8.36768 8.67909 9.25302 10.87685 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.002894 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.613394 B = 9672.412449 C =10143.364089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.126 3.874 15 C -0.101 4.101 16 H 0.083 0.917 17 C -0.109 4.109 18 C -0.109 4.109 19 C -0.152 4.152 20 C -0.165 4.165 21 C -0.095 4.095 22 C -0.114 4.114 23 C -0.111 4.111 24 H 0.269 0.731 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.397 0.603 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.840 -22.609 0.185 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.392 5.392 14 C 0.002 3.998 15 C -0.120 4.120 16 H 0.101 0.899 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.170 4.170 20 C -0.183 4.183 21 C -0.132 4.132 22 C -0.151 4.151 23 C -0.149 4.149 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.230 0.770 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.638 -22.852 0.181 25.208 hybrid contribution 2.567 1.435 -0.095 2.943 sum 13.206 -21.417 0.086 25.161 Atomic orbital electron populations 1.70010 1.05949 1.27544 1.46828 1.24991 0.95030 0.99014 0.94560 0.86225 0.79229 0.81250 0.78786 1.19952 1.20816 1.19945 1.22834 0.94874 0.91717 1.58991 0.91005 1.85388 1.05014 0.96271 1.96710 1.23532 1.06494 0.95551 1.04831 1.20296 0.86552 0.86308 0.75223 1.90697 1.15398 1.85658 1.47642 1.46016 1.09822 1.05607 1.77741 1.21401 0.95679 0.80590 1.02111 1.22082 0.96522 0.94573 0.98781 0.89898 1.21922 0.96757 0.98989 0.96985 1.21053 0.96280 1.00596 0.96649 1.23087 0.99073 0.99047 0.95820 1.22999 0.99270 0.97479 0.98539 1.20062 0.93735 0.97056 1.02328 1.20482 0.94863 1.00280 0.99517 1.21469 0.99495 0.94201 0.99696 0.92142 0.89312 0.89316 0.76950 0.91729 0.91753 0.91740 0.91370 0.89859 0.91671 0.87276 0.87057 0.90861 0.91960 0.92348 0.92267 0.91471 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 11 C 0.53 10.14 7.85 -10.98 -0.09 10.05 16 12 O -0.52 -12.09 15.86 5.56 0.09 -12.01 16 13 N -0.74 -10.10 5.35 -60.29 -0.32 -10.42 16 14 C 0.13 1.50 4.86 -4.04 -0.02 1.48 16 15 C -0.10 -0.86 1.89 -89.16 -0.17 -1.03 16 16 H 0.08 0.74 6.29 -51.93 -0.33 0.42 16 17 C -0.11 -0.87 4.76 -25.86 -0.12 -0.99 16 18 C -0.11 -0.77 5.42 -27.98 -0.15 -0.92 16 19 C -0.15 -1.11 8.55 -36.13 -0.31 -1.42 16 20 C -0.16 -1.17 9.28 -36.27 -0.34 -1.50 16 21 C -0.09 -0.61 5.13 -29.69 -0.15 -0.76 16 22 C -0.11 -0.78 4.90 -29.27 -0.14 -0.92 16 23 C -0.11 -0.82 5.06 -27.10 -0.14 -0.96 16 24 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 26 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 27 H 0.40 4.35 7.84 -40.82 -0.32 4.03 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.55 3.56 -51.93 -0.18 0.37 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.07 0.46 5.63 -51.93 -0.29 0.16 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 40 H 0.07 0.46 6.57 -51.93 -0.34 0.12 16 41 H 0.07 0.54 7.63 -51.93 -0.40 0.14 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -33.68 334.72 -9.32 -43.00 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.42 Total: 0.44 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.21 Total: -13.03 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.41 Total: -36.09 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.68 -9.32 -43.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890051862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.141 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds