Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46855 * 184.40431 * 3 2 1 5 5 C 1.37097 * 119.99791 * 263.78171 * 4 3 2 6 6 H 1.07994 * 120.00087 * 140.92152 * 5 4 3 7 7 C 1.38952 * 120.00197 * 320.91797 * 5 4 3 8 8 N 1.31408 * 120.00257 * 158.67188 * 7 5 4 9 9 Si 1.86801 * 119.99748 * 338.67343 * 7 5 4 10 10 H 1.48496 * 109.47576 * 87.85055 * 9 7 5 11 11 H 1.48512 * 109.46914 * 207.85137 * 9 7 5 12 12 H 1.48496 * 109.47136 * 327.84663 * 9 7 5 13 13 C 1.34774 * 119.99821 * 83.78262 * 4 3 2 14 14 O 1.21292 * 119.99561 * 179.97438 * 13 4 3 15 15 C 1.50693 * 120.00350 * 359.97438 * 13 4 3 16 16 H 1.09008 * 115.56291 * 37.19503 * 15 13 4 17 17 C 1.53003 * 117.50189 * 251.51371 * 15 13 4 18 18 C 1.52997 * 117.50152 * 182.88457 * 15 13 4 19 19 C 1.52999 * 117.50039 * 214.98014 * 18 15 13 20 20 C 1.50698 * 117.51694 * 0.02562 * 18 15 13 21 21 C 1.38234 * 120.00027 * 274.29119 * 20 18 15 22 22 C 1.38235 * 120.00195 * 179.74706 * 21 20 18 23 23 C 1.38234 * 119.99649 * 0.54463 * 22 21 20 24 24 C 1.38236 * 120.00081 * 359.70886 * 23 22 21 25 25 C 1.38229 * 120.00160 * 0.02562 * 24 23 22 26 26 H 4.40642 * 5.51419 * 180.02562 * 4 1 2 27 27 H 1.09005 * 109.46659 * 64.40475 * 3 2 1 28 28 H 1.08997 * 109.46851 * 304.40253 * 3 2 1 29 29 H 0.97000 * 120.00366 * 179.97438 * 8 7 5 30 30 H 1.08992 * 117.50076 * 145.02226 * 17 15 13 31 31 H 1.09000 * 117.51107 * 359.97438 * 17 15 13 32 32 H 1.09007 * 109.47039 * 299.98714 * 19 18 15 33 33 H 1.08998 * 109.46867 * 179.97438 * 19 18 15 34 34 H 1.08996 * 109.47342 * 59.98836 * 19 18 15 35 35 H 1.08004 * 119.99738 * 359.97438 * 21 20 18 36 36 H 1.07995 * 120.00103 * 180.27760 * 22 21 20 37 37 H 1.08000 * 119.99528 * 179.72514 * 23 22 21 38 38 H 1.08004 * 119.99688 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.00264 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3781 0.1061 5 6 3.4831 2.0705 -1.0244 6 1 3.2403 3.1191 -1.1121 7 6 4.1497 1.4231 -2.0575 8 7 4.1202 1.9218 -3.2729 9 14 5.0879 -0.1563 -1.7185 10 1 4.1707 -1.3161 -1.8554 11 1 6.2020 -0.2888 -2.6916 12 1 5.6371 -0.1195 -0.3393 13 6 3.2388 1.9644 1.3150 14 8 3.6430 3.1047 1.4028 15 6 2.8543 1.2036 2.5576 16 1 3.1054 0.1428 2.5562 17 6 1.5698 1.6243 3.2745 18 6 2.9318 1.9461 3.8930 19 6 3.3559 1.1430 5.1243 20 6 3.3863 3.3826 3.8656 21 6 4.7356 3.6814 3.8960 22 6 5.1527 4.9989 3.8656 23 6 4.2201 6.0181 3.8161 24 6 2.8706 5.7195 3.7909 25 6 2.4537 4.4018 3.8159 26 1 -1.0502 -0.0004 0.0002 27 1 3.0095 -0.4432 -0.9269 28 1 3.0096 -0.5798 0.8479 29 1 4.5859 1.4701 -3.9940 30 1 0.9760 0.8406 3.7448 31 1 1.0029 2.4518 2.8478 32 1 2.6497 0.3289 5.2881 33 1 3.3674 1.7955 5.9973 34 1 4.3529 0.7324 4.9646 35 1 5.4641 2.8852 3.9399 36 1 6.2070 5.2322 3.8848 37 1 4.5459 7.0476 3.7968 38 1 2.1420 6.5158 3.7527 39 1 1.3993 4.1685 3.7966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890402093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = 94.866612 kcal Electronic energy + Delta-G solvation = -22272.529576 eV Core-core repulsion = 19148.566349 eV Total energy + Delta-G solvation = -3123.963227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99405 -38.27383 -36.50386 -35.06756 -32.62201 -31.55419 -30.49508 -30.16652 -28.44982 -26.76248 -25.52937 -22.96185 -22.69801 -21.71336 -19.53709 -18.67495 -18.23478 -16.79286 -16.54241 -16.10191 -15.61152 -14.78747 -14.45704 -14.28850 -13.91553 -13.68852 -13.22591 -13.12296 -12.96427 -12.87273 -12.73220 -12.36232 -12.24172 -11.93057 -11.83600 -11.47752 -10.96485 -10.79590 -10.70508 -10.59306 -10.23221 -10.05317 -9.76819 -9.67828 -9.46933 -9.10025 -8.66025 -8.34786 -7.82617 -7.79830 -6.39719 -3.98634 1.91198 1.97059 2.96865 3.15996 3.20595 3.22893 3.38323 3.47925 4.10007 4.15263 4.32271 4.44374 4.81875 4.94751 5.00230 5.15130 5.21957 5.24984 5.43299 5.43984 5.55614 5.56632 5.79427 5.82412 5.84815 5.87034 5.95464 6.06453 6.10172 6.14126 6.22576 6.32396 6.42830 6.53005 6.54575 6.97317 7.00386 7.14585 7.53895 7.54842 8.13473 8.29746 8.50343 8.96498 9.29612 9.77861 10.72690 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.006507 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.399457 B = 4302.081219 C = 4954.649923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.169 4.169 3 C 0.188 3.812 4 N -0.463 5.463 5 C -0.311 4.311 6 H 0.104 0.896 7 C 0.061 3.939 8 N -0.863 5.863 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.261 1.261 13 C 0.498 3.502 14 O -0.531 6.531 15 C -0.165 4.165 16 H 0.113 0.887 17 C -0.145 4.145 18 C -0.071 4.071 19 C -0.108 4.108 20 C -0.002 4.002 21 C -0.090 4.090 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.111 4.111 26 H 0.212 0.788 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.274 0.726 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -2.932 14.752 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.170 4.170 3 C 0.065 3.935 4 N -0.185 5.185 5 C -0.438 4.438 6 H 0.122 0.878 7 C -0.145 4.145 8 N -0.499 5.499 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.185 1.185 13 C 0.286 3.714 14 O -0.410 6.410 15 C -0.187 4.187 16 H 0.131 0.869 17 C -0.182 4.182 18 C -0.071 4.071 19 C -0.166 4.166 20 C -0.002 4.002 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.129 4.129 26 H 0.229 0.771 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.776 -2.319 14.564 15.006 hybrid contribution 0.253 -1.035 -0.444 1.154 sum -2.523 -3.354 14.120 14.730 Atomic orbital electron populations 1.24672 0.95610 1.01098 1.02810 1.23770 0.94856 0.99597 0.98813 1.19016 0.84109 0.87511 1.02849 1.43607 1.57482 1.11471 1.05919 1.18988 1.36260 0.97047 0.91528 0.87843 1.25366 0.96266 0.98093 0.94775 1.69745 1.40008 1.40673 0.99447 0.87189 0.80646 0.83178 0.79632 1.19863 1.21003 1.18488 1.19366 0.81422 0.87674 0.82953 1.90648 1.47496 1.17645 1.85173 1.22561 1.03648 0.99761 0.92714 0.86879 1.23097 0.89852 1.03087 1.02159 1.20184 1.00330 0.93225 0.93393 1.21308 1.01305 0.98742 0.95200 1.18594 0.93244 0.91617 0.96717 1.20643 0.94894 0.95999 0.99266 1.20919 0.98813 0.92976 1.00756 1.20918 0.93383 0.98511 1.02084 1.20901 0.95696 0.96054 1.01083 1.20766 0.98666 0.92521 1.00928 0.77148 0.88302 0.89928 0.91563 0.88295 0.88354 0.92155 0.91841 0.92031 0.87215 0.86967 0.87088 0.87025 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.77 19.25 29.55 0.57 -3.20 16 2 C -0.17 -3.29 13.44 -37.12 -0.50 -3.79 16 3 C 0.19 3.90 4.25 -6.83 -0.03 3.87 16 4 N -0.46 -11.31 2.13 -117.93 -0.25 -11.56 16 5 C -0.31 -8.89 9.33 -14.93 -0.14 -9.03 16 6 H 0.10 3.35 7.94 -52.49 -0.42 2.93 16 7 C 0.06 1.69 5.27 -17.47 -0.09 1.60 16 8 N -0.86 -25.15 13.96 55.50 0.77 -24.38 16 9 Si 0.87 20.18 25.34 -169.99 -4.31 15.87 16 10 H -0.27 -5.80 6.36 56.52 0.36 -5.44 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.50 11.52 7.32 -10.99 -0.08 11.44 16 14 O -0.53 -13.85 13.06 5.55 0.07 -13.78 16 15 C -0.17 -2.90 4.82 -91.77 -0.44 -3.35 16 16 H 0.11 1.75 6.64 -51.92 -0.34 1.41 16 17 C -0.14 -2.16 9.09 -26.72 -0.24 -2.40 16 18 C -0.07 -1.09 2.33 -155.66 -0.36 -1.45 16 19 C -0.11 -1.27 9.69 37.16 0.36 -0.91 16 20 C 0.00 -0.03 2.93 -104.62 -0.31 -0.33 16 21 C -0.09 -1.57 8.55 -39.58 -0.34 -1.90 16 22 C -0.12 -1.92 10.05 -39.58 -0.40 -2.31 16 23 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 24 C -0.12 -1.92 10.05 -39.59 -0.40 -2.32 16 25 C -0.11 -1.88 9.00 -39.58 -0.36 -2.23 16 26 H 0.21 2.63 7.80 -54.08 -0.42 2.21 16 27 H 0.10 2.16 3.54 -51.93 -0.18 1.98 16 28 H 0.08 1.43 6.32 -51.93 -0.33 1.10 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.10 1.19 8.05 -51.93 -0.42 0.78 16 31 H 0.10 1.61 6.85 -51.93 -0.36 1.25 16 32 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 33 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.11 1.72 6.72 -52.49 -0.35 1.36 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -32.59 329.00 -6.85 -39.44 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.94 Total: 8.25 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.15 Total: -18.80 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.52 Total: -35.94 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.07 Total: -13.78 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.31 Total: 15.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.59 -6.85 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890402093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.309 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds