Wall clock time and date at job start Tue Mar 31 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76196 * 103.00087 * 2 1 4 4 C 1.35442 * 125.86756 * 179.97438 * 3 2 1 5 5 C 1.41390 * 106.77444 * 180.02562 * 4 3 2 6 6 C 1.34459 * 106.94194 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.71931 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47106 * 94.04002 * 7 6 5 9 9 C 1.46912 * 111.00067 * 193.86995 * 8 7 6 10 10 C 1.50698 * 109.47090 * 156.45381 * 9 8 7 11 11 H 1.07997 * 120.00010 * 354.19151 * 10 9 8 12 12 C 1.37874 * 119.99755 * 174.19797 * 10 9 8 13 13 N 1.31517 * 119.99983 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99965 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46976 * 89.99751 * 14 12 10 16 16 H 1.48495 * 109.47160 * 210.00147 * 14 12 10 17 17 H 1.48502 * 109.46962 * 329.99911 * 14 12 10 18 18 C 1.46903 * 110.99880 * 69.92005 * 8 7 6 19 19 C 1.53001 * 109.47121 * 201.20480 * 18 8 7 20 20 C 1.53004 * 109.47240 * 60.00752 * 19 18 8 21 21 C 1.52995 * 109.47362 * 180.02562 * 19 18 8 22 22 O 1.34409 * 125.87321 * 0.34474 * 3 2 1 23 23 H 1.08997 * 109.47242 * 300.00469 * 1 2 3 24 24 H 1.09004 * 109.46655 * 59.99944 * 1 2 3 25 25 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 26 26 H 1.07997 * 126.62158 * 0.02562 * 4 3 2 27 27 H 1.07995 * 126.53225 * 180.02562 * 5 4 3 28 28 H 1.09009 * 109.46726 * 334.04853 * 7 6 5 29 29 H 1.08994 * 109.47551 * 214.04840 * 7 6 5 30 30 H 1.08997 * 109.46748 * 276.45225 * 9 8 7 31 31 H 1.08996 * 109.46858 * 36.45008 * 9 8 7 32 32 H 0.97008 * 119.99563 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.47164 * 321.20408 * 18 8 7 34 34 H 1.08999 * 109.47341 * 81.20866 * 18 8 7 35 35 H 1.08996 * 109.47421 * 300.01177 * 19 18 8 36 36 H 1.09005 * 109.46955 * 305.76582 * 20 19 18 37 37 H 1.09007 * 109.46872 * 65.75891 * 20 19 18 38 38 H 1.08996 * 109.47635 * 185.76160 * 20 19 18 39 39 H 1.09005 * 109.46712 * 59.99958 * 21 19 18 40 40 H 1.08996 * 109.47529 * 179.97438 * 21 19 18 41 41 H 1.08996 * 109.47315 * 300.00631 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4584 2.2431 0.0005 5 6 3.3083 3.6490 0.0009 6 6 1.9877 3.9021 0.0012 7 6 1.3540 5.2694 0.0011 8 7 1.0592 5.6723 -1.3804 9 6 0.7516 7.1069 -1.4561 10 6 1.0208 7.6053 -2.8526 11 1 1.4718 6.9494 -3.5825 12 6 0.6914 8.8987 -3.1983 13 7 0.1419 9.6973 -2.3096 14 14 1.0258 9.5168 -4.9291 15 1 -0.1566 9.2501 -5.7870 16 1 1.2902 10.9775 -4.8906 17 1 2.2097 8.8140 -5.4856 18 6 -0.0356 4.8689 -1.9408 19 6 0.0259 4.9186 -3.4688 20 6 1.3667 4.3552 -3.9439 21 6 -1.1147 4.0824 -4.0526 22 8 1.3264 2.7292 0.0066 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 4.3888 1.6948 0.0006 27 1 4.1029 4.3804 0.0009 28 1 2.0397 5.9877 0.4506 29 1 0.4288 5.2411 0.5767 30 1 -0.2980 7.2669 -1.2093 31 1 1.3781 7.6506 -0.7491 32 1 -0.0902 10.6072 -2.5530 33 1 0.0636 3.8362 -1.6066 34 1 -0.9909 5.2702 -1.6025 35 1 -0.0731 5.9513 -3.8031 36 1 2.1798 4.8856 -3.4482 37 1 1.4223 3.2944 -3.6991 38 1 1.4533 4.4841 -5.0228 39 1 -2.0698 4.4841 -3.7141 40 1 -1.0712 4.1181 -5.1411 41 1 -1.0160 3.0497 -3.7183 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893880576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:28 Heat of formation + Delta-G solvation = 10.442928 kcal Electronic energy + Delta-G solvation = -20919.139612 eV Core-core repulsion = 17926.959450 eV Total energy + Delta-G solvation = -2992.180161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25561 -37.50528 -33.94827 -32.87387 -32.58585 -30.16817 -29.14456 -27.21457 -26.45289 -25.98414 -23.74545 -21.70548 -21.15122 -20.18608 -19.04982 -18.05730 -16.45792 -16.17130 -15.50130 -14.96205 -14.71261 -14.41336 -13.92932 -13.85339 -13.67547 -13.60947 -13.06104 -12.70166 -12.52558 -12.30739 -12.16191 -11.95733 -11.71131 -11.52305 -11.27889 -11.04508 -10.91091 -10.70333 -10.55104 -10.22755 -10.13118 -9.96987 -9.93064 -9.51891 -9.16794 -9.13944 -8.40937 -7.39316 -7.24303 -6.03636 -4.02674 1.22322 1.78696 1.85183 2.82276 3.30934 3.37915 3.42129 3.66501 4.41653 4.86812 4.91550 4.94946 5.11937 5.21389 5.30371 5.49952 5.60142 5.65716 5.76162 5.82692 5.90810 5.97948 6.06061 6.12673 6.16095 6.27874 6.30767 6.44147 6.53782 6.67890 6.72554 6.80411 7.09911 7.21687 7.26194 7.27232 7.39118 7.83131 8.04897 8.12617 8.48462 9.04641 9.59578 11.06594 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.004573 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.535903 B = 6121.022681 C = 6584.973557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.041 6.041 3 C -0.046 4.046 4 C -0.171 4.171 5 C -0.191 4.191 6 C 0.026 3.974 7 C 0.130 3.870 8 N -0.528 5.528 9 C 0.192 3.808 10 C -0.500 4.500 11 H 0.075 0.925 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.272 1.272 18 C 0.076 3.924 19 C -0.102 4.102 20 C -0.128 4.128 21 C -0.143 4.143 22 O -0.174 6.174 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.148 0.852 27 H 0.152 0.848 28 H 0.102 0.898 29 H 0.039 0.961 30 H 0.001 0.999 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.050 0.950 34 H 0.025 0.975 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -16.285 4.384 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.195 5.805 3 C -0.206 4.206 4 C -0.198 4.198 5 C -0.212 4.212 6 C -0.028 4.028 7 C 0.002 3.998 8 N -0.253 5.253 9 C 0.068 3.932 10 C -0.538 4.538 11 H 0.093 0.907 12 C -0.147 4.147 13 N -0.539 5.539 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.197 1.197 18 C -0.053 4.053 19 C -0.121 4.121 20 C -0.185 4.185 21 C -0.201 4.201 22 O -0.072 6.072 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.126 0.874 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.121 0.879 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.777 -17.209 4.133 17.787 hybrid contribution -1.263 1.643 -0.434 2.117 sum 0.514 -15.566 3.699 16.008 Atomic orbital electron populations 1.23568 0.94502 1.06871 1.06690 1.85462 1.06716 0.94295 1.94002 1.23931 0.91076 0.92048 1.13567 1.21479 0.96141 0.94201 1.07974 1.21464 0.96062 0.95150 1.08509 1.22758 0.91359 0.85743 1.02928 1.20632 0.99079 0.87028 0.93057 1.62149 1.41400 1.07638 1.14135 1.19855 0.95165 0.80022 0.98207 1.21282 1.39370 0.96556 0.96641 0.90725 1.24988 0.95502 0.96881 0.97282 1.69959 1.42862 1.07129 1.33998 0.86581 0.78739 0.77950 0.84734 1.20743 1.21357 1.19671 1.21999 0.91788 0.95875 0.95609 1.21361 0.93897 1.02496 0.94319 1.21626 0.98784 0.98930 0.99168 1.21831 0.98879 0.99149 1.00250 1.84202 1.36417 1.13960 1.72575 0.89511 0.89314 0.87373 0.83469 0.83062 0.87945 0.94326 0.98090 0.95735 0.92996 0.93176 0.95712 0.87264 0.90742 0.95058 0.94561 0.93427 0.93229 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.47 101.05 1.06 -0.31 16 2 S -0.04 -0.48 22.75 -107.50 -2.45 -2.92 16 3 C -0.05 -0.68 7.35 29.73 0.22 -0.46 16 4 C -0.17 -2.48 10.88 -39.38 -0.43 -2.91 16 5 C -0.19 -2.96 10.80 -39.72 -0.43 -3.39 16 6 C 0.03 0.44 6.15 -35.64 -0.22 0.22 16 7 C 0.13 2.30 5.47 -4.98 -0.03 2.28 16 8 N -0.53 -10.88 3.50 -237.51 -0.83 -11.72 16 9 C 0.19 4.71 4.80 -4.97 -0.02 4.68 16 10 C -0.50 -13.20 7.10 -34.44 -0.24 -13.45 16 11 H 0.07 1.95 5.45 -52.49 -0.29 1.67 16 12 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 14 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.08 1.47 4.28 -3.82 -0.02 1.46 16 19 C -0.10 -1.96 2.43 -90.62 -0.22 -2.18 16 20 C -0.13 -2.37 8.54 37.16 0.32 -2.05 16 21 C -0.14 -2.31 9.19 37.16 0.34 -1.97 16 22 O -0.17 -2.86 9.20 4.47 0.04 -2.82 16 23 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 25 H 0.11 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.10 1.71 7.70 -51.92 -0.40 1.31 16 29 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.00 0.03 7.63 -51.93 -0.40 -0.36 16 31 H 0.02 0.63 7.60 -51.93 -0.39 0.24 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.05 0.93 6.14 -51.93 -0.32 0.62 16 34 H 0.02 0.50 7.65 -51.93 -0.40 0.11 16 35 H 0.11 2.45 5.26 -51.93 -0.27 2.18 16 36 H 0.07 1.53 6.92 -51.93 -0.36 1.17 16 37 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -28.52 344.52 -8.71 -37.23 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.61 Total: 0.75 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 0.23 Total: -16.69 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.10 Total: -36.88 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.45 Total: -2.92 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.52 -8.71 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893880576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.675 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds