Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47280 * 239.99618 * 3 2 1 5 5 H 1.48501 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47395 * 119.99751 * 3 2 1 7 7 C 1.37879 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47403 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47244 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00329 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99597 * 179.97438 * 13 12 11 16 16 C 1.46819 * 125.35347 * 359.95781 * 15 13 12 17 17 C 1.53996 * 106.51813 * 198.26604 * 16 15 13 18 18 H 1.09000 * 112.30272 * 211.30323 * 17 16 15 19 19 C 1.55045 * 108.53485 * 87.45219 * 17 16 15 20 20 S 1.83942 * 101.06179 * 206.30875 * 19 17 16 21 21 C 1.83347 * 95.85673 * 35.60123 * 20 19 17 22 22 C 1.53540 * 105.14999 * 340.18213 * 21 20 19 23 23 H 1.09000 * 110.13411 * 234.13097 * 22 21 20 24 24 C 1.46728 * 125.34712 * 179.97438 * 15 13 12 25 25 H 0.97003 * 119.99475 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47022 * 60.00493 * 9 7 2 27 27 H 1.08997 * 109.47573 * 300.00180 * 9 7 2 28 28 H 1.09007 * 109.47123 * 60.00655 * 10 9 7 29 29 H 1.08994 * 109.47626 * 300.00531 * 10 9 7 30 30 H 1.09001 * 109.47270 * 60.00395 * 11 10 9 31 31 H 1.09004 * 109.47556 * 300.00325 * 11 10 9 32 32 H 1.09001 * 109.46861 * 59.99806 * 12 11 10 33 33 H 1.08997 * 109.46647 * 300.00160 * 12 11 10 34 34 H 1.09000 * 110.04304 * 317.51684 * 16 15 13 35 35 H 1.08998 * 110.04966 * 78.93310 * 16 15 13 36 36 H 1.09002 * 111.11205 * 88.34848 * 19 17 16 37 37 H 1.08997 * 111.10731 * 324.26759 * 19 17 16 38 38 H 1.08996 * 110.31079 * 99.10525 * 21 20 19 39 39 H 1.09000 * 110.30412 * 221.26293 * 21 20 19 40 40 H 1.08997 * 109.79790 * 59.54152 * 24 15 13 41 41 H 1.09006 * 109.79991 * 298.68041 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4801 -4.9871 0.0020 12 6 2.4742 -6.1501 0.0024 13 6 1.7207 -7.4552 0.0023 14 8 0.5079 -7.4552 0.0024 15 7 2.3946 -8.6224 0.0021 16 6 3.8564 -8.7594 0.0010 17 6 4.1611 -10.1962 -0.4616 18 1 5.0723 -10.5910 -0.0121 19 6 4.2366 -10.2099 -2.0102 20 16 3.7810 -11.9552 -2.3704 21 6 2.5659 -12.1166 -1.0069 22 6 2.9175 -10.9932 -0.0210 23 1 3.0705 -11.4040 0.9769 24 6 1.7825 -9.9560 0.0025 25 1 -0.4849 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6246 -2.5564 0.8919 28 1 2.8724 -3.6040 0.8910 29 1 2.8712 -3.6048 -0.8889 30 1 0.8531 -5.0450 -0.8877 31 1 0.8537 -5.0447 0.8922 32 1 3.1010 -6.0920 0.8923 33 1 3.1008 -6.0927 -0.8876 34 1 4.2982 -8.0425 -0.6910 35 1 4.2475 -8.5983 1.0056 36 1 5.2463 -9.9883 -2.3560 37 1 3.5148 -9.5181 -2.4444 38 1 1.5525 -11.9842 -1.3856 39 1 2.6661 -13.0887 -0.5241 40 1 1.1556 -10.0747 -0.8812 41 1 1.1816 -10.0861 0.9026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894337959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = -59.747767 kcal Electronic energy + Delta-G solvation = -19744.758770 eV Core-core repulsion = 16749.534912 eV Total energy + Delta-G solvation = -2995.223858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63823 -38.40381 -34.91903 -33.80944 -32.61182 -31.69910 -29.84594 -27.29886 -27.03127 -25.30394 -23.24630 -22.02338 -20.26616 -20.02376 -19.37063 -17.36779 -16.90561 -16.62519 -16.13723 -15.61611 -15.39343 -14.58970 -14.49210 -14.39584 -14.15890 -13.62588 -13.16137 -12.86723 -12.81407 -12.59396 -12.41115 -12.14329 -12.03047 -11.65243 -11.62462 -11.55302 -11.32940 -10.97147 -10.54123 -10.53526 -10.42016 -10.39996 -9.85660 -9.61598 -9.23074 -8.99535 -8.86241 -8.30210 -8.14782 -5.95066 -3.97731 1.38245 1.81598 2.62995 2.76434 3.35188 3.39660 3.41767 3.82267 3.84470 3.96494 4.31904 4.48607 4.52119 4.59696 4.71853 4.80189 4.99471 5.08518 5.11168 5.18647 5.25883 5.28171 5.32861 5.40120 5.40672 5.47561 5.55079 5.80036 6.03842 6.12064 6.29464 6.53254 6.82660 7.00051 7.18979 7.30356 7.73808 7.89981 8.06168 8.13456 8.47801 9.09787 9.65830 11.16269 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.040143 B = 0.002547 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.335983 B =10990.260142 C =11316.998166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.528 3.472 14 O -0.530 6.530 15 N -0.625 5.625 16 C 0.108 3.892 17 C -0.098 4.098 18 H 0.113 0.887 19 C -0.063 4.063 20 S -0.294 6.294 21 C -0.063 4.063 22 C -0.104 4.104 23 H 0.103 0.897 24 C 0.111 3.889 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.435 -26.151 -0.301 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.318 3.682 14 O -0.405 6.405 15 N -0.361 5.361 16 C -0.017 4.017 17 C -0.118 4.118 18 H 0.131 0.869 19 C -0.211 4.211 20 S -0.066 6.066 21 C -0.211 4.211 22 C -0.124 4.124 23 H 0.121 0.879 24 C -0.013 4.013 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.922 -26.747 -1.177 28.553 hybrid contribution 0.107 1.613 0.840 1.822 sum 10.029 -25.134 -0.337 27.063 Atomic orbital electron populations 1.69966 1.06058 1.26634 1.50818 1.25043 0.94842 0.99226 0.95448 0.86669 0.79577 0.83251 0.78545 1.20283 1.21313 1.20281 1.21245 0.92934 0.91209 1.50566 0.92810 1.19089 0.94049 0.91241 0.97318 1.21644 0.99074 0.93942 1.00055 1.21476 0.97034 0.92702 1.03009 1.21792 1.00053 0.91573 1.03880 1.20870 0.87947 0.84326 0.75067 1.90723 1.14034 1.86958 1.48810 1.48376 1.06815 1.05587 1.75350 1.22043 0.81419 0.96143 1.02063 1.23003 0.99162 0.95274 0.94392 0.86854 1.24485 1.05692 0.94303 0.96650 1.87952 1.54638 1.18217 1.45837 1.23988 1.00617 1.01545 0.94964 1.22446 0.94677 0.94358 1.00896 0.87890 1.21967 0.95039 0.81499 1.02755 0.92974 0.96593 0.96594 0.93470 0.93478 0.91772 0.91772 0.89125 0.89188 0.89744 0.90740 0.87048 0.88663 0.88549 0.87841 0.91165 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.13 -1.76 4.74 -27.88 -0.13 -1.89 16 13 C 0.53 7.42 7.84 -10.98 -0.09 7.34 16 14 O -0.53 -9.79 16.29 5.56 0.09 -9.70 16 15 N -0.62 -6.36 3.32 -172.16 -0.57 -6.93 16 16 C 0.11 0.70 5.93 -3.35 -0.02 0.68 16 17 C -0.10 -0.52 3.51 -88.42 -0.31 -0.83 16 18 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 19 C -0.06 -0.40 6.66 38.24 0.25 -0.15 16 20 S -0.29 -2.39 23.22 -107.50 -2.50 -4.88 16 21 C -0.06 -0.38 6.95 37.44 0.26 -0.12 16 22 C -0.10 -0.59 3.36 -89.34 -0.30 -0.89 16 23 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 24 C 0.11 0.97 6.35 -3.52 -0.02 0.94 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.02 7.88 -51.93 -0.41 0.61 16 34 H 0.08 0.49 7.36 -51.93 -0.38 0.11 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.73 7.99 -51.93 -0.41 0.31 16 38 H 0.10 0.59 7.19 -51.93 -0.37 0.22 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.69 7.23 -51.93 -0.38 0.31 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -34.26 340.95 -10.27 -44.54 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -6.99 Total: -5.49 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.16 Total: -12.70 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.17 Total: -33.79 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.50 Total: -4.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.26 -10.27 -44.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894337959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.212 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds