Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39721 * 119.99370 * 157.42877 * 3 2 1 5 5 C 1.37604 * 119.99938 * 180.02562 * 4 3 2 6 6 C 1.39746 * 119.99777 * 359.97438 * 5 4 3 7 7 C 1.47691 * 119.99771 * 180.02562 * 6 5 4 8 8 O 1.21568 * 120.00643 * 23.27403 * 7 6 5 9 9 N 1.34775 * 119.99478 * 203.26993 * 7 6 5 10 10 C 1.46502 * 120.00214 * 181.68625 * 9 7 6 11 11 C 1.50705 * 109.46690 * 270.00029 * 10 9 7 12 12 H 1.07995 * 120.00157 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99603 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99799 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00017 * 0.02562 * 13 11 10 16 16 H 1.48509 * 109.47362 * 89.99609 * 15 13 11 17 17 H 1.48499 * 109.47405 * 209.99345 * 15 13 11 18 18 H 1.48497 * 109.47260 * 329.99618 * 15 13 11 19 19 C 1.46505 * 120.00028 * 1.68497 * 9 7 6 20 20 C 1.52995 * 109.47225 * 259.38947 * 19 9 7 21 21 C 1.53003 * 117.50297 * 243.62426 * 20 19 9 22 22 C 1.53004 * 117.50246 * 174.99784 * 20 19 9 23 23 C 1.39738 * 119.99281 * 0.27602 * 6 5 4 24 24 C 1.37601 * 119.99710 * 359.46835 * 23 6 5 25 25 H 4.51948 * 14.06553 * 0.02562 * 4 2 1 26 26 H 1.07992 * 119.99734 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.99719 * 179.97438 * 5 4 3 28 28 H 1.08993 * 109.46758 * 29.99705 * 10 9 7 29 29 H 1.08996 * 109.47216 * 149.99924 * 10 9 7 30 30 H 0.96995 * 120.00011 * 180.02562 * 14 13 11 31 31 H 1.09006 * 109.47042 * 139.39078 * 19 9 7 32 32 H 1.08997 * 109.47439 * 19.39282 * 19 9 7 33 33 H 1.09003 * 115.54857 * 29.33261 * 20 19 9 34 34 H 1.08993 * 117.49790 * 359.97438 * 21 20 19 35 35 H 1.08999 * 117.49850 * 145.02288 * 21 20 19 36 36 H 1.08993 * 117.50324 * 214.98305 * 22 20 19 37 37 H 1.09000 * 117.49506 * 0.02562 * 22 20 19 38 38 H 1.08001 * 119.99862 * 179.72646 * 23 6 5 39 39 H 1.08000 * 120.00084 * 180.23433 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3039 1.1184 -0.4645 5 6 4.6799 1.1189 -0.4650 6 6 5.3792 0.0017 -0.0005 7 6 6.8561 0.0025 -0.0006 8 8 7.4635 1.0555 0.0123 9 7 7.5305 -1.1643 -0.0148 10 6 8.9951 -1.1644 0.0224 11 6 9.5333 -1.1262 -1.3847 12 1 8.8526 -1.1045 -2.2228 13 6 10.8949 -1.1190 -1.6020 14 7 11.3646 -1.0852 -2.8299 15 14 12.0722 -1.1573 -0.1523 16 1 12.3855 -2.5671 0.1939 17 1 13.3250 -0.4462 -0.5130 18 1 11.4423 -0.4893 1.0148 19 6 6.7991 -2.4326 -0.0676 20 6 6.7384 -3.0450 1.3332 21 6 7.4403 -4.3874 1.5484 22 6 5.9121 -4.3203 1.5115 23 6 4.6810 -1.1181 0.4591 24 6 3.3050 -1.1163 0.4644 25 1 -1.0501 -0.0007 0.0008 26 1 2.7634 1.9815 -0.8238 27 1 5.2194 1.9827 -0.8244 28 1 9.3446 -0.2886 0.5690 29 1 9.3458 -2.0679 0.5212 30 1 12.3224 -1.0805 -2.9828 31 1 7.3104 -3.1191 -0.7424 32 1 5.7868 -2.2534 -0.4299 33 1 6.7494 -2.3329 2.1584 34 1 7.9448 -4.8345 0.6919 35 1 7.9133 -4.5587 2.5153 36 1 5.3799 -4.4475 2.4541 37 1 5.4120 -4.7232 0.6308 38 1 5.2213 -1.9832 0.8140 39 1 2.7653 -1.9803 0.8232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896861304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = 105.490636 kcal Electronic energy + Delta-G solvation = -21517.087851 eV Core-core repulsion = 18393.585316 eV Total energy + Delta-G solvation = -3123.502535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36541 -38.23889 -37.44282 -34.60135 -33.94285 -32.55391 -31.15884 -30.51285 -28.31755 -26.70111 -24.26991 -22.89707 -22.19533 -21.96877 -20.86413 -19.11527 -19.06498 -17.08636 -16.89815 -16.31395 -15.65826 -15.36015 -14.94394 -14.56845 -14.20617 -14.03748 -13.77149 -13.54117 -13.23731 -12.99633 -12.44782 -12.31525 -11.77637 -11.66567 -11.60231 -11.49090 -11.24657 -11.10358 -10.89338 -10.59205 -10.43642 -10.38721 -10.10361 -9.92222 -9.55038 -9.17253 -8.93477 -8.59156 -8.52128 -7.79223 -6.08532 -4.07294 0.61401 1.35073 2.54728 2.66545 3.26798 3.34824 3.39598 3.49452 3.60397 3.82784 4.06852 4.09269 4.39827 4.68889 4.78489 4.89299 4.90457 4.99736 5.11248 5.25002 5.37268 5.44328 5.48581 5.50807 5.63287 5.65772 5.86763 5.89397 5.96251 6.00041 6.16698 6.25572 6.33922 6.36095 6.40591 6.69661 6.81735 6.96700 7.28087 7.32080 7.60505 8.16506 8.45852 8.86255 8.95859 9.51413 11.04862 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.004832 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.373005 B = 5792.923652 C = 6806.546080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.015 3.985 4 C -0.105 4.105 5 C -0.064 4.064 6 C -0.109 4.109 7 C 0.546 3.454 8 O -0.531 6.531 9 N -0.578 5.578 10 C 0.217 3.783 11 C -0.529 4.529 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.874 3.126 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.264 1.264 19 C 0.110 3.890 20 C -0.181 4.181 21 C -0.169 4.169 22 C -0.180 4.180 23 C -0.123 4.123 24 C -0.105 4.105 25 H 0.224 0.776 26 H 0.130 0.870 27 H 0.140 0.860 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.173 0.827 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.309 -4.335 8.592 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C 0.015 3.985 4 C -0.123 4.123 5 C -0.083 4.083 6 C -0.112 4.112 7 C 0.333 3.667 8 O -0.409 6.409 9 N -0.308 5.308 10 C 0.097 3.903 11 C -0.567 4.567 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.535 5.535 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.188 1.188 19 C -0.013 4.013 20 C -0.200 4.200 21 C -0.206 4.206 22 C -0.217 4.217 23 C -0.141 4.141 24 C -0.123 4.123 25 H 0.240 0.760 26 H 0.148 0.852 27 H 0.158 0.842 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.189 0.811 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.741 -3.771 8.482 20.023 hybrid contribution 0.559 -0.078 0.566 0.799 sum -17.182 -3.849 9.048 19.797 Atomic orbital electron populations 1.24855 0.95728 0.99703 0.99739 1.20115 0.92061 1.01012 1.01081 1.16170 0.86470 0.95225 1.00620 1.21119 0.93766 0.97533 0.99846 1.21220 0.93289 0.97683 0.96098 1.20371 0.94295 0.95162 1.01411 1.18155 0.86279 0.84351 0.77899 1.90762 1.69513 1.30697 1.49924 1.47746 1.08502 1.04020 1.70495 1.19692 0.74570 0.97526 0.98492 1.21318 0.92606 1.51357 0.91420 0.90713 1.24841 0.98014 0.94455 0.95622 1.69893 1.13559 1.50453 1.19639 0.86879 0.81034 0.78502 0.83545 1.20073 1.20952 1.18812 1.21931 0.98638 0.86752 0.94017 1.22873 1.06003 0.91374 0.99754 1.23024 0.94372 0.99712 1.03480 1.23001 0.94439 1.01079 1.03222 1.22651 0.94356 0.98932 0.98146 1.21137 0.93880 0.97438 0.99814 0.75966 0.85221 0.84246 0.94071 0.95249 0.92563 0.89752 0.88051 0.87376 0.88130 0.88914 0.88740 0.88445 0.81083 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 19.25 29.55 0.57 -1.07 16 2 C -0.14 -1.63 13.23 -38.84 -0.51 -2.14 16 3 C 0.02 0.19 5.73 -106.87 -0.61 -0.42 16 4 C -0.10 -1.34 9.73 -39.26 -0.38 -1.72 16 5 C -0.06 -0.97 9.57 -39.25 -0.38 -1.35 16 6 C -0.11 -1.82 5.62 -104.91 -0.59 -2.41 16 7 C 0.55 11.52 7.52 -12.40 -0.09 11.43 16 8 O -0.53 -13.33 16.16 5.31 0.09 -13.25 16 9 N -0.58 -11.92 2.47 -176.23 -0.44 -12.36 16 10 C 0.22 5.29 4.20 -5.19 -0.02 5.27 16 11 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 12 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 15 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.26 -6.33 6.54 56.52 0.37 -5.97 16 19 C 0.11 1.74 5.12 -4.04 -0.02 1.72 16 20 C -0.18 -2.33 4.03 -90.62 -0.37 -2.69 16 21 C -0.17 -1.99 10.18 -26.73 -0.27 -2.26 16 22 C -0.18 -1.76 9.99 -26.73 -0.27 -2.03 16 23 C -0.12 -1.66 7.50 -39.25 -0.29 -1.95 16 24 C -0.10 -1.24 9.73 -39.26 -0.38 -1.63 16 25 H 0.22 1.06 7.80 -54.09 -0.42 0.63 16 26 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.14 2.14 7.81 -52.48 -0.41 1.73 16 28 H 0.04 1.08 6.50 -51.93 -0.34 0.75 16 29 H 0.03 0.67 7.50 -51.93 -0.39 0.28 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 31 H 0.08 1.40 7.87 -51.93 -0.41 0.99 16 32 H 0.10 1.42 4.22 -51.95 -0.22 1.20 16 33 H 0.11 1.45 8.13 -51.93 -0.42 1.03 16 34 H 0.10 1.24 8.03 -51.93 -0.42 0.82 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.17 2.11 2.40 -52.49 -0.13 1.98 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -34.08 334.81 -8.12 -42.19 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.86 Total: 3.16 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -4.06 Total: -14.73 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.34 Total: -39.24 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.08 -8.12 -42.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896861304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.684 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds