Wall clock time and date at job start Tue Mar 31 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47333 * 345.69546 * 3 2 1 5 5 O 1.42896 * 109.47291 * 180.02562 * 4 3 2 6 6 C 1.35898 * 117.00411 * 179.97438 * 5 4 3 7 7 C 1.38729 * 120.05910 * 179.97438 * 6 5 4 8 8 C 1.38143 * 119.94409 * 180.02562 * 7 6 5 9 9 C 1.38271 * 120.05634 * 0.02570 * 8 7 6 10 10 C 1.50701 * 119.94474 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46914 * 95.28340 * 10 9 8 12 12 C 1.36928 * 120.00330 * 265.71732 * 11 10 9 13 13 H 1.07999 * 120.00636 * 185.46929 * 12 11 10 14 14 C 1.38818 * 119.99870 * 5.46680 * 12 11 10 15 15 N 1.31614 * 119.99785 * 354.99719 * 14 12 11 16 16 Si 1.86803 * 119.99888 * 174.99572 * 14 12 11 17 17 H 1.48501 * 109.47315 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47062 * 119.99934 * 16 14 12 19 19 H 1.48494 * 109.47178 * 240.00189 * 16 14 12 20 20 C 1.46503 * 119.99581 * 85.44471 * 11 10 9 21 21 C 1.47201 * 109.47194 * 89.99903 * 20 11 10 22 22 C 9.53633 * 134.15555 * 167.37704 * 4 1 2 23 23 C 1.38268 * 120.11115 * 0.24913 * 9 8 7 24 24 C 1.38142 * 120.05315 * 359.45435 * 23 9 8 25 25 H 4.44650 * 5.63358 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.46864 * 225.69289 * 3 2 1 27 27 H 1.08994 * 109.47131 * 105.69632 * 3 2 1 28 28 H 1.09000 * 109.46952 * 59.99925 * 4 3 2 29 29 H 1.09003 * 109.47047 * 300.00379 * 4 3 2 30 30 H 1.07997 * 120.02878 * 0.02562 * 7 6 5 31 31 H 1.08002 * 119.97360 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47049 * 335.28783 * 10 9 8 33 33 H 1.08999 * 109.47114 * 215.29079 * 10 9 8 34 34 H 0.97003 * 119.99642 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.46697 * 209.99471 * 20 11 10 36 36 H 1.08996 * 109.47092 * 329.99750 * 20 11 10 37 37 H 8.84802 * 125.34266 * 169.59409 * 6 1 2 38 38 H 1.07999 * 119.96938 * 179.70491 * 23 9 8 39 39 H 1.08005 * 120.02847 * 180.25110 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3969 0.3564 5 8 4.5856 -1.3961 0.3570 6 6 5.2032 -2.5689 0.6567 7 6 6.5885 -2.6399 0.6751 8 6 7.2139 -3.8335 0.9796 9 6 6.4602 -4.9569 1.2654 10 6 7.1450 -6.2579 1.5967 11 7 7.2533 -6.3961 3.0512 12 6 8.3931 -5.9934 3.6942 13 1 8.5093 -6.1756 4.7524 14 6 9.3995 -5.3510 2.9860 15 7 9.3025 -5.2165 1.6803 16 14 10.8913 -4.6774 3.8862 17 1 10.7605 -4.9561 5.3389 18 1 12.1197 -5.3301 3.3661 19 1 10.9801 -3.2111 3.6691 20 6 6.1396 -6.9597 3.8183 21 6 6.2994 -8.4198 3.9147 22 6 6.4259 -9.5858 3.9888 23 6 5.0793 -4.8902 1.2423 24 6 4.4492 -3.6975 0.9444 25 1 -1.0498 -0.0005 -0.0001 26 1 3.0090 0.7187 0.7355 27 1 3.0092 0.2788 -0.9893 28 1 2.7936 -2.1148 -0.3790 29 1 2.7934 -1.6751 1.3457 30 1 7.1777 -1.7628 0.4515 31 1 8.2923 -3.8892 0.9944 32 1 8.1418 -6.2664 1.1557 33 1 6.5630 -7.0874 1.1951 34 1 10.0056 -4.7672 1.1855 35 1 6.1328 -6.5280 4.8192 36 1 5.1997 -6.7293 3.3168 37 1 6.5404 -10.6252 4.0619 38 1 4.4929 -5.7703 1.4612 39 1 3.3706 -3.6448 0.9303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897163504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:25 Heat of formation + Delta-G solvation = 137.520706 kcal Electronic energy + Delta-G solvation = -21001.630407 eV Core-core repulsion = 17879.516800 eV Total energy + Delta-G solvation = -3122.113607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.53758 -37.49377 -35.72974 -34.55148 -32.82031 -31.14627 -30.58106 -29.88844 -29.33569 -26.25242 -25.32400 -24.18084 -21.93089 -21.47331 -19.93119 -18.48426 -17.65497 -17.46150 -16.83216 -16.07575 -15.54389 -15.01057 -14.60834 -14.12250 -13.84905 -13.66636 -13.63860 -13.34869 -13.14133 -12.92559 -12.64341 -12.13828 -11.76294 -11.72112 -11.28238 -10.93790 -10.78279 -10.52792 -10.45626 -10.28866 -10.26980 -10.17372 -10.05608 -9.63609 -9.51890 -9.29774 -8.81425 -8.04719 -7.25070 -7.01658 -5.58045 -3.33758 2.27420 2.36616 2.46486 2.60011 3.33147 3.39239 3.41704 3.51938 3.54689 3.57888 4.34744 4.41328 4.72066 4.90312 4.96299 5.09577 5.21787 5.33441 5.52841 5.60863 5.69051 5.70074 5.73476 5.76469 6.19551 6.27271 6.30505 6.37609 6.47519 6.67656 6.69346 6.89747 7.09196 7.12832 7.35537 7.43646 7.53054 7.76708 7.89800 8.00602 8.17491 8.37809 8.55767 9.21674 9.73066 10.08443 11.11216 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.004136 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.893826 B = 6768.875886 C = 7930.561211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 C -0.011 4.011 4 C 0.069 3.931 5 O -0.324 6.324 6 C 0.099 3.901 7 C -0.172 4.172 8 C -0.057 4.057 9 C -0.086 4.086 10 C 0.142 3.858 11 N -0.584 5.584 12 C -0.207 4.207 13 H 0.079 0.921 14 C -0.022 4.022 15 N -0.908 5.908 16 Si 0.922 3.078 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.287 1.287 20 C 0.235 3.765 21 C -0.165 4.165 22 C -0.261 4.261 23 C -0.099 4.099 24 C -0.225 4.225 25 H 0.219 0.781 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.183 0.817 32 H 0.178 0.822 33 H 0.005 0.995 34 H 0.253 0.747 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.204 0.796 38 H 0.105 0.895 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 5.207 -2.970 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.184 4.184 3 C -0.048 4.048 4 C -0.007 4.007 5 O -0.239 6.239 6 C 0.055 3.945 7 C -0.190 4.190 8 C -0.075 4.075 9 C -0.089 4.089 10 C 0.018 3.982 11 N -0.301 5.301 12 C -0.336 4.336 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.562 5.562 16 Si 0.753 3.247 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.214 1.214 20 C 0.109 3.891 21 C -0.168 4.168 22 C -0.280 4.280 23 C -0.118 4.118 24 C -0.244 4.244 25 H 0.236 0.764 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.199 0.801 32 H 0.193 0.807 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.221 0.779 38 H 0.123 0.877 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.677 5.482 -3.049 12.384 hybrid contribution -0.088 0.007 0.593 0.600 sum -10.766 5.489 -2.456 12.331 Atomic orbital electron populations 1.24906 0.95905 0.99930 1.01234 1.22750 0.94090 1.01085 1.00430 1.18484 0.84580 0.97368 1.04337 1.22452 0.80261 0.96554 1.01417 1.85930 1.19426 1.32353 1.86168 1.18979 0.92412 0.83954 0.99164 1.20705 0.90421 0.99878 1.08039 1.22858 1.05159 0.89229 0.90267 1.20834 0.91681 0.99558 0.96837 1.21600 1.06001 0.87803 0.82787 1.44236 1.13162 1.69509 1.03223 1.19673 0.93286 1.27184 0.93424 0.90362 1.24702 0.99425 1.01272 0.95905 1.69008 1.32984 1.49102 1.05107 0.85849 0.81791 0.78553 0.78507 1.20664 1.21704 1.21412 1.17991 0.92083 0.82060 0.97007 1.25369 0.97762 0.96077 0.97544 1.24702 1.03500 0.95934 1.03865 1.20939 0.95297 0.95978 0.99549 1.20919 0.98431 0.94024 1.11016 0.76419 0.88466 0.88483 0.92122 0.92109 0.86912 0.80115 0.80696 0.97670 0.93347 0.91114 0.91583 0.77947 0.87721 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 19.25 29.55 0.57 -1.31 16 2 C -0.18 -1.98 13.34 -37.12 -0.50 -2.47 16 3 C -0.01 -0.12 6.07 -29.52 -0.18 -0.30 16 4 C 0.07 0.90 4.70 37.16 0.17 1.07 16 5 O -0.32 -5.39 10.14 -19.42 -0.20 -5.59 16 6 C 0.10 1.87 6.69 -39.21 -0.26 1.61 16 7 C -0.17 -3.47 9.99 -39.43 -0.39 -3.87 16 8 C -0.06 -1.27 9.20 -39.60 -0.36 -1.63 16 9 C -0.09 -1.91 5.46 -104.60 -0.57 -2.48 16 10 C 0.14 3.34 5.29 -5.19 -0.03 3.31 16 11 N -0.58 -13.95 2.47 -177.95 -0.44 -14.39 16 12 C -0.21 -5.30 9.81 -15.06 -0.15 -5.45 16 13 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 14 C -0.02 -0.57 5.45 -17.43 -0.09 -0.66 16 15 N -0.91 -22.70 5.73 55.49 0.32 -22.38 16 16 Si 0.92 20.65 29.56 -169.99 -5.02 15.63 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.24 4.86 6.16 -6.83 -0.04 4.82 16 21 C -0.16 -3.34 13.69 -37.11 -0.51 -3.85 16 22 C -0.26 -4.76 19.26 29.57 0.57 -4.19 16 23 C -0.10 -1.95 9.34 -39.61 -0.37 -2.32 16 24 C -0.23 -4.13 9.04 -39.43 -0.36 -4.49 16 25 H 0.22 1.22 7.80 -54.10 -0.42 0.80 16 26 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.76 7.66 -51.93 -0.40 0.37 16 29 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 30 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.18 4.28 4.54 -52.70 -0.24 4.04 16 32 H 0.18 4.53 4.55 -82.31 -0.37 4.16 16 33 H 0.01 0.12 8.08 -51.93 -0.42 -0.30 16 34 H 0.25 6.11 8.08 -40.82 -0.33 5.78 16 35 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 36 H 0.07 1.26 7.04 -51.93 -0.37 0.90 16 37 H 0.20 2.86 7.78 -54.18 -0.42 2.44 16 38 H 0.10 1.91 7.43 -52.49 -0.39 1.52 16 39 H 0.11 1.71 6.30 -52.48 -0.33 1.38 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -27.58 339.10 -7.71 -35.29 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.98 Total: 8.55 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.50 Total: -22.22 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.12 Total: -36.77 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.59 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.58 -7.71 -35.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.811 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds