Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39719 * 119.99059 * 158.06203 * 3 2 1 5 5 C 1.37604 * 119.99777 * 179.97438 * 4 3 2 6 6 C 1.39741 * 119.99925 * 359.97401 * 5 4 3 7 7 C 1.47683 * 120.00598 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99511 * 326.29870 * 7 6 5 9 9 N 1.34773 * 120.00055 * 146.01699 * 7 6 5 10 10 C 1.46924 * 120.63397 * 354.11812 * 9 7 6 11 11 C 1.52765 * 109.00694 * 233.58096 * 10 9 7 12 12 C 1.53037 * 109.38322 * 305.58653 * 11 10 9 13 13 C 1.50701 * 109.45065 * 181.25553 * 12 11 10 14 14 H 1.08002 * 119.99569 * 239.93858 * 13 12 11 15 15 C 1.37870 * 119.99770 * 59.93285 * 13 12 11 16 16 N 1.31512 * 120.00632 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99651 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46962 * 60.00656 * 17 15 13 19 19 H 1.48507 * 109.46989 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47317 * 300.00193 * 17 15 13 21 21 C 1.53042 * 109.54033 * 61.23692 * 12 11 10 22 22 C 1.46928 * 120.62826 * 174.38979 * 9 7 6 23 23 C 1.39742 * 119.99390 * 0.25416 * 6 5 4 24 24 C 1.37611 * 119.99411 * 359.51404 * 23 6 5 25 25 H 4.51947 * 14.06481 * 359.97438 * 4 2 1 26 26 H 1.07994 * 120.00124 * 359.97360 * 4 3 2 27 27 H 1.08002 * 119.99735 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.58437 * 353.41288 * 10 9 7 29 29 H 1.08990 * 109.58938 * 113.83996 * 10 9 7 30 30 H 1.08996 * 109.56504 * 185.54807 * 11 10 9 31 31 H 1.09003 * 109.38327 * 65.50876 * 11 10 9 32 32 H 1.09000 * 109.46173 * 301.22177 * 12 11 10 33 33 H 0.96997 * 120.00621 * 179.97438 * 16 15 13 34 34 H 1.09004 * 109.50044 * 178.68054 * 21 12 11 35 35 H 1.09005 * 109.52295 * 58.60729 * 21 12 11 36 36 H 1.08999 * 109.59046 * 246.15749 * 22 9 7 37 37 H 1.09008 * 109.58761 * 6.44594 * 22 9 7 38 38 H 1.07998 * 120.00781 * 179.74791 * 23 6 5 39 39 H 1.07994 * 119.99676 * 180.23558 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3040 1.1234 -0.4521 5 6 4.6800 1.1244 -0.4517 6 6 5.3794 0.0027 0.0014 7 6 6.8562 0.0033 0.0014 8 8 7.4637 0.5971 -0.8683 9 7 7.5304 -0.6495 0.9687 10 6 6.8159 -1.2571 2.0997 11 6 7.4221 -0.7440 3.4047 12 6 8.9303 -1.0039 3.4008 13 6 9.5251 -0.5262 4.7004 14 1 10.2877 0.2386 4.6964 15 6 9.0958 -1.0655 5.8944 16 7 8.1676 -1.9971 5.8993 17 14 9.8327 -0.4729 7.5055 18 1 9.5819 0.9828 7.6586 19 1 9.2052 -1.2043 8.6355 20 1 11.2959 -0.7257 7.5032 21 6 9.5767 -0.2497 2.2365 22 6 8.9944 -0.7620 0.9154 23 6 4.6812 -1.1220 0.4491 24 6 3.3051 -1.1210 0.4530 25 1 -1.0499 -0.0011 -0.0001 26 1 2.7635 1.9905 -0.8019 27 1 5.2195 1.9922 -0.8015 28 1 5.7618 -0.9833 2.0556 29 1 6.9160 -2.3415 2.0551 30 1 6.9658 -1.2626 4.2478 31 1 7.2377 0.3266 3.4929 32 1 9.1144 -2.0723 3.2881 33 1 7.8658 -2.3768 6.7393 34 1 10.6538 -0.4163 2.2483 35 1 9.3725 0.8165 2.3350 36 1 9.2758 -1.8052 0.7723 37 1 9.3770 -0.1635 0.0886 38 1 5.2214 -1.9906 0.7955 39 1 2.7655 -1.9887 0.8026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897353621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = 46.110807 kcal Electronic energy + Delta-G solvation = -21449.747245 eV Core-core repulsion = 18323.669808 eV Total energy + Delta-G solvation = -3126.077437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37849 -38.56313 -36.82124 -34.12426 -33.51045 -31.75059 -31.02323 -30.44602 -29.76470 -26.43801 -24.50714 -23.13830 -22.66519 -22.01298 -20.20582 -19.17901 -18.69490 -17.15748 -16.30856 -16.08249 -15.79116 -15.20106 -14.57763 -14.48322 -14.45119 -13.77258 -13.57929 -13.29415 -13.02228 -12.79772 -12.76026 -12.34986 -12.11984 -11.67238 -11.58158 -11.33075 -11.09116 -10.93224 -10.68755 -10.62256 -10.40815 -10.13657 -9.74592 -9.52356 -9.20700 -9.16143 -8.88675 -8.62010 -8.39779 -8.03834 -6.05270 -4.11288 0.51656 1.25726 2.51404 2.54468 3.18377 3.28739 3.33457 3.36551 3.42363 3.90015 4.02214 4.39373 4.68027 4.77230 4.81079 5.18056 5.24438 5.36265 5.37774 5.55421 5.70835 5.80249 5.86944 5.90243 6.01267 6.11118 6.16972 6.25826 6.27289 6.30635 6.41903 6.61839 6.69481 6.86441 7.00714 7.10961 7.24656 7.28804 7.63243 7.84319 7.89166 8.00980 8.37852 8.45004 8.91688 9.53907 11.00291 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.004214 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.758741 B = 6643.244853 C = 7638.368148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.022 3.978 4 C -0.104 4.104 5 C -0.065 4.065 6 C -0.111 4.111 7 C 0.552 3.448 8 O -0.552 6.552 9 N -0.591 5.591 10 C 0.088 3.912 11 C -0.125 4.125 12 C 0.049 3.951 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.124 4.124 22 C 0.111 3.889 23 C -0.087 4.087 24 C -0.103 4.103 25 H 0.224 0.776 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.809 1.116 -10.366 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C 0.022 3.978 4 C -0.122 4.122 5 C -0.084 4.084 6 C -0.114 4.114 7 C 0.340 3.660 8 O -0.432 6.432 9 N -0.322 5.322 10 C -0.034 4.034 11 C -0.163 4.163 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.162 4.162 22 C -0.010 4.010 23 C -0.105 4.105 24 C -0.121 4.121 25 H 0.241 0.759 26 H 0.149 0.851 27 H 0.155 0.845 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.162 0.838 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.545 1.289 -10.668 15.772 hybrid contribution 0.132 0.254 1.115 1.151 sum -11.413 1.543 -9.553 14.963 Atomic orbital electron populations 1.24882 0.95745 0.99416 0.99331 1.20065 0.92028 1.01248 1.01336 1.16139 0.86592 0.94931 1.00175 1.21108 0.93703 0.97537 0.99868 1.21117 0.93396 0.97713 0.96174 1.20125 0.93653 0.95794 1.01858 1.18267 0.86840 0.78960 0.81928 1.90736 1.69713 1.44327 1.38460 1.48150 1.08011 1.53352 1.22714 1.22477 0.96310 0.97323 0.87255 1.21965 0.99871 0.99773 0.94730 1.18635 0.91001 0.95515 0.91814 1.21167 1.21375 1.21670 0.90879 0.92749 1.24946 0.95040 0.94881 0.99024 1.69813 1.29458 1.27237 1.26600 0.86676 0.79439 0.78881 0.83114 1.20336 1.21294 1.20305 1.22012 0.99554 1.00420 0.94186 1.21747 0.78441 1.00908 0.99947 1.21574 0.93991 0.98431 0.96517 1.21135 0.93741 0.97658 0.99569 0.75887 0.85097 0.84516 0.90045 0.91680 0.87617 0.94233 0.95425 0.92910 0.92040 0.92887 0.91949 0.90183 0.83819 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.15 -1.64 13.23 -38.83 -0.51 -2.16 16 3 C 0.02 0.26 5.73 -106.87 -0.61 -0.35 16 4 C -0.10 -1.22 9.73 -39.26 -0.38 -1.61 16 5 C -0.07 -0.87 9.58 -39.25 -0.38 -1.25 16 6 C -0.11 -1.67 5.33 -104.92 -0.56 -2.23 16 7 C 0.55 9.86 7.39 -12.40 -0.09 9.77 16 8 O -0.55 -11.25 16.20 5.29 0.09 -11.17 16 9 N -0.59 -10.58 2.98 -174.20 -0.52 -11.10 16 10 C 0.09 1.54 4.72 -3.93 -0.02 1.52 16 11 C -0.12 -2.72 5.14 -26.83 -0.14 -2.86 16 12 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 13 C -0.51 -13.55 8.56 -34.44 -0.29 -13.84 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -24.14 11.31 55.43 0.63 -23.51 16 17 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 22 C 0.11 2.01 6.44 -3.71 -0.02 1.99 16 23 C -0.09 -1.13 7.34 -39.25 -0.29 -1.42 16 24 C -0.10 -1.21 9.73 -39.26 -0.38 -1.59 16 25 H 0.22 1.04 7.80 -54.09 -0.42 0.62 16 26 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.14 1.76 7.97 -52.49 -0.42 1.34 16 28 H 0.08 1.28 4.40 -51.93 -0.23 1.05 16 29 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 30 H 0.11 2.55 6.03 -51.93 -0.31 2.24 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.44 7.00 -51.92 -0.36 1.07 16 38 H 0.14 1.75 5.91 -52.49 -0.31 1.43 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -29.74 326.21 -8.42 -38.16 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.97 Total: 2.15 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -3.54 Total: -15.16 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.11 Total: -34.61 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.74 -8.42 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897353621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.274 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds