Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39719 * 119.99059 * 158.06203 * 3 2 1 5 5 C 1.37604 * 119.99777 * 179.97438 * 4 3 2 6 6 C 1.39741 * 119.99925 * 359.97401 * 5 4 3 7 7 C 1.47683 * 120.00598 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99511 * 326.29870 * 7 6 5 9 9 N 1.34773 * 120.00055 * 146.01699 * 7 6 5 10 10 C 1.46924 * 120.63397 * 354.11812 * 9 7 6 11 11 C 1.52765 * 109.00694 * 233.58096 * 10 9 7 12 12 C 1.53037 * 109.38322 * 305.58653 * 11 10 9 13 13 C 1.50701 * 109.45065 * 181.25553 * 12 11 10 14 14 H 1.08002 * 119.99569 * 239.93858 * 13 12 11 15 15 C 1.37870 * 119.99770 * 59.93285 * 13 12 11 16 16 N 1.31512 * 120.00632 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99651 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46962 * 60.00656 * 17 15 13 19 19 H 1.48507 * 109.46989 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47317 * 300.00193 * 17 15 13 21 21 C 1.53042 * 109.54033 * 61.23692 * 12 11 10 22 22 C 1.46928 * 120.62826 * 174.38979 * 9 7 6 23 23 C 1.39742 * 119.99390 * 0.25416 * 6 5 4 24 24 C 1.37611 * 119.99411 * 359.51404 * 23 6 5 25 25 H 4.51947 * 14.06481 * 359.97438 * 4 2 1 26 26 H 1.07994 * 120.00124 * 359.97360 * 4 3 2 27 27 H 1.08002 * 119.99735 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.58437 * 353.41288 * 10 9 7 29 29 H 1.08990 * 109.58938 * 113.83996 * 10 9 7 30 30 H 1.08996 * 109.56504 * 185.54807 * 11 10 9 31 31 H 1.09003 * 109.38327 * 65.50876 * 11 10 9 32 32 H 1.09000 * 109.46173 * 301.22177 * 12 11 10 33 33 H 0.96997 * 120.00621 * 179.97438 * 16 15 13 34 34 H 1.09004 * 109.50044 * 178.68054 * 21 12 11 35 35 H 1.09005 * 109.52295 * 58.60729 * 21 12 11 36 36 H 1.08999 * 109.59046 * 246.15749 * 22 9 7 37 37 H 1.09008 * 109.58761 * 6.44594 * 22 9 7 38 38 H 1.07998 * 120.00781 * 179.74791 * 23 6 5 39 39 H 1.07994 * 119.99676 * 180.23558 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3040 1.1234 -0.4521 5 6 4.6800 1.1244 -0.4517 6 6 5.3794 0.0027 0.0014 7 6 6.8562 0.0033 0.0014 8 8 7.4637 0.5971 -0.8683 9 7 7.5304 -0.6495 0.9687 10 6 6.8159 -1.2571 2.0997 11 6 7.4221 -0.7440 3.4047 12 6 8.9303 -1.0039 3.4008 13 6 9.5251 -0.5262 4.7004 14 1 10.2877 0.2386 4.6964 15 6 9.0958 -1.0655 5.8944 16 7 8.1676 -1.9971 5.8993 17 14 9.8327 -0.4729 7.5055 18 1 9.5819 0.9828 7.6586 19 1 9.2052 -1.2043 8.6355 20 1 11.2959 -0.7257 7.5032 21 6 9.5767 -0.2497 2.2365 22 6 8.9944 -0.7620 0.9154 23 6 4.6812 -1.1220 0.4491 24 6 3.3051 -1.1210 0.4530 25 1 -1.0499 -0.0011 -0.0001 26 1 2.7635 1.9905 -0.8019 27 1 5.2195 1.9922 -0.8015 28 1 5.7618 -0.9833 2.0556 29 1 6.9160 -2.3415 2.0551 30 1 6.9658 -1.2626 4.2478 31 1 7.2377 0.3266 3.4929 32 1 9.1144 -2.0723 3.2881 33 1 7.8658 -2.3768 6.7393 34 1 10.6538 -0.4163 2.2483 35 1 9.3725 0.8165 2.3350 36 1 9.2758 -1.8052 0.7723 37 1 9.3770 -0.1635 0.0886 38 1 5.2214 -1.9906 0.7955 39 1 2.7655 -1.9887 0.8026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897353621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = 31.337013 kcal Electronic energy + Delta-G solvation = -21450.387885 eV Core-core repulsion = 18323.669808 eV Total energy + Delta-G solvation = -3126.718077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65650 -39.71138 -38.40127 -35.47712 -34.83257 -33.24607 -32.20518 -31.81254 -31.01016 -28.16074 -25.86466 -24.46821 -24.08008 -23.31699 -21.71451 -20.25883 -19.93498 -18.66590 -18.08442 -17.40201 -16.68511 -16.56507 -16.40119 -15.75436 -15.57440 -15.07927 -14.81933 -14.56607 -14.47090 -14.42021 -14.14745 -13.88128 -13.31851 -13.23829 -13.00321 -12.80059 -12.49058 -12.40938 -12.14124 -12.11078 -11.92845 -11.49685 -11.42034 -11.09808 -11.01264 -10.74601 -10.40137 -10.00332 -9.71947 -9.46689 -8.07654 -6.20460 -0.46900 0.30736 1.42822 1.43598 1.46571 1.50799 1.77897 1.93109 2.22976 2.44481 2.94796 3.19046 3.27783 3.46277 3.82959 3.88307 4.09349 4.23149 4.28476 4.32086 4.40324 4.46931 4.53647 4.58597 4.73107 4.84578 4.91020 4.95266 4.95967 5.17116 5.20620 5.27599 5.30709 5.34849 5.41446 5.53850 5.64235 5.76896 5.98541 6.11625 6.38697 6.42154 6.57356 6.88156 7.04645 7.46991 8.95664 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.004214 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.758741 B = 6643.244853 C = 7638.368148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.206 4.206 3 C 0.025 3.975 4 C -0.104 4.104 5 C -0.071 4.071 6 C -0.138 4.138 7 C 0.552 3.448 8 O -0.583 6.583 9 N -0.595 5.595 10 C 0.100 3.900 11 C -0.116 4.116 12 C 0.046 3.954 13 C -0.537 4.537 14 H 0.046 0.954 15 C 0.020 3.980 16 N -0.910 5.910 17 Si 0.947 3.053 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.274 1.274 21 C -0.114 4.114 22 C 0.116 3.884 23 C -0.087 4.087 24 C -0.104 4.104 25 H 0.263 0.737 26 H 0.153 0.847 27 H 0.135 0.865 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.022 0.978 32 H 0.008 0.992 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.151 0.849 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 0.923 -10.627 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.206 4.206 3 C 0.025 3.975 4 C -0.122 4.122 5 C -0.090 4.090 6 C -0.141 4.141 7 C 0.342 3.658 8 O -0.465 6.465 9 N -0.325 5.325 10 C -0.021 4.021 11 C -0.155 4.155 12 C 0.028 3.972 13 C -0.575 4.575 14 H 0.064 0.936 15 C -0.179 4.179 16 N -0.549 5.549 17 Si 0.773 3.227 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.200 1.200 21 C -0.152 4.152 22 C -0.006 4.006 23 C -0.105 4.105 24 C -0.122 4.122 25 H 0.279 0.721 26 H 0.170 0.830 27 H 0.153 0.847 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.169 0.831 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.798 1.092 -10.930 17.636 hybrid contribution 0.689 0.332 1.182 1.408 sum -13.110 1.424 -9.747 16.398 Atomic orbital electron populations 1.25849 0.96478 0.96530 0.96019 1.20246 0.92408 1.03911 1.04016 1.16377 0.87670 0.94706 0.98728 1.21319 0.92976 0.98419 0.99442 1.21189 0.94218 0.97341 0.96216 1.20001 0.91866 0.97503 1.04725 1.18708 0.88092 0.77825 0.81132 1.90706 1.70720 1.45555 1.39557 1.48170 1.07901 1.53562 1.22893 1.22368 0.97060 0.97763 0.84891 1.21740 0.98905 0.98415 0.96411 1.18604 0.92255 0.94450 0.91901 1.21516 1.21635 1.21773 0.92617 0.93587 1.25601 0.95466 0.95097 1.01785 1.69918 1.30021 1.27761 1.27216 0.85786 0.78791 0.78338 0.79747 1.20235 1.20710 1.19962 1.21861 0.99857 0.99107 0.94406 1.21668 0.78808 1.01731 0.98395 1.21627 0.94620 0.97924 0.96332 1.21381 0.93229 0.98457 0.99111 0.72096 0.82967 0.84703 0.87827 0.90408 0.89904 0.95944 0.97379 0.92868 0.91509 0.94278 0.90382 0.89983 0.83134 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 19.25 74.32 1.43 -0.37 16 2 C -0.21 -4.04 13.23 30.02 0.40 -3.64 16 3 C 0.03 0.57 5.73 -21.32 -0.12 0.45 16 4 C -0.10 -2.30 9.73 22.48 0.22 -2.08 16 5 C -0.07 -1.87 9.58 22.48 0.22 -1.66 16 6 C -0.14 -4.08 5.33 -20.06 -0.11 -4.19 16 7 C 0.55 19.77 7.39 86.74 0.64 20.41 16 8 O -0.58 -24.04 16.20 -3.97 -0.06 -24.10 16 9 N -0.59 -21.21 2.98 -823.32 -2.45 -23.66 16 10 C 0.10 3.48 4.72 86.22 0.41 3.89 16 11 C -0.12 -5.15 5.14 30.53 0.16 -5.00 16 12 C 0.05 2.22 2.07 -11.51 -0.02 2.20 16 13 C -0.54 -28.96 8.56 25.60 0.22 -28.75 16 14 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 15 C 0.02 1.06 5.30 84.65 0.45 1.50 16 16 N -0.91 -49.70 11.31 21.44 0.24 -49.46 16 17 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 22 C 0.12 4.18 6.44 86.36 0.56 4.74 16 23 C -0.09 -2.15 7.34 22.49 0.16 -1.98 16 24 C -0.10 -2.25 9.73 22.48 0.22 -2.04 16 25 H 0.26 1.03 7.80 -4.42 -0.03 1.00 16 26 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 27 H 0.14 3.51 7.97 -2.91 -0.02 3.48 16 28 H 0.10 3.16 4.40 -2.39 -0.01 3.15 16 29 H 0.08 2.52 8.03 -2.39 -0.02 2.50 16 30 H 0.08 4.08 6.03 -2.39 -0.01 4.07 16 31 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.08 2.95 7.00 -2.38 -0.02 2.93 16 38 H 0.15 3.43 5.91 -2.91 -0.02 3.41 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -64.76 326.21 5.78 -58.98 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.05 Total: 14.58 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 4.98 Total: -21.06 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -2.21 Total: -73.12 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -64.76 5.78 -58.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897353621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.315 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds