Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39718 * 119.99521 * 183.04386 * 3 2 1 5 5 C 1.37594 * 120.00438 * 180.02562 * 4 3 2 6 6 C 1.39740 * 119.99693 * 359.97438 * 5 4 3 7 7 C 1.47693 * 120.00275 * 179.97438 * 6 5 4 8 8 O 1.21571 * 120.00030 * 318.71772 * 7 6 5 9 9 N 1.34778 * 119.99775 * 138.72580 * 7 6 5 10 10 C 1.46924 * 120.63209 * 354.15910 * 9 7 6 11 11 C 1.53195 * 108.77442 * 233.58820 * 10 9 7 12 12 C 1.53042 * 109.31478 * 305.36620 * 11 10 9 13 13 C 1.53040 * 109.53709 * 61.36340 * 12 11 10 14 14 H 1.09000 * 109.49877 * 58.62403 * 13 12 11 15 15 C 1.50697 * 109.49681 * 178.68595 * 13 12 11 16 16 H 1.08001 * 120.00412 * 359.97438 * 15 13 12 17 17 C 1.37880 * 120.00215 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99957 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00303 * 180.27219 * 17 15 13 20 20 H 1.48501 * 109.47488 * 179.72396 * 19 17 15 21 21 H 1.48502 * 109.47206 * 299.72691 * 19 17 15 22 22 H 1.48504 * 109.47072 * 59.72453 * 19 17 15 23 23 C 1.46929 * 120.62858 * 174.13755 * 9 7 6 24 24 C 1.39742 * 119.99254 * 0.24543 * 6 5 4 25 25 C 1.37597 * 119.99924 * 359.51789 * 24 6 5 26 26 H 4.51953 * 14.06400 * 0.02562 * 4 2 1 27 27 H 1.08005 * 119.99601 * 0.02811 * 4 3 2 28 28 H 1.07999 * 120.00180 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.58801 * 113.80207 * 10 9 7 30 30 H 1.09000 * 109.58776 * 353.37527 * 10 9 7 31 31 H 1.09001 * 109.49855 * 185.41163 * 11 10 9 32 32 H 1.08997 * 109.52352 * 65.33472 * 11 10 9 33 33 H 1.08998 * 109.45964 * 301.34804 * 12 11 10 34 34 H 1.08995 * 109.46417 * 181.38599 * 12 11 10 35 35 H 0.96999 * 120.00711 * 179.97438 * 18 17 15 36 36 H 1.09003 * 109.58641 * 6.62668 * 23 9 7 37 37 H 1.08993 * 109.58805 * 246.19740 * 23 9 7 38 38 H 1.08003 * 119.99996 * 179.74428 * 24 6 5 39 39 H 1.07993 * 120.00222 * 180.23085 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3039 1.2093 0.0643 5 6 4.6799 1.2102 0.0637 6 6 5.3792 0.0021 -0.0005 7 6 6.8562 0.0029 -0.0017 8 8 7.4631 0.8299 -0.6541 9 7 7.5311 -0.9133 0.7205 10 6 6.8173 -1.8369 1.6129 11 6 7.4297 -1.7409 3.0138 12 6 8.9370 -1.9909 2.9257 13 6 9.5824 -0.9210 2.0421 14 1 9.3821 0.0655 2.4601 15 6 11.0708 -1.1490 1.9820 16 1 11.5129 -1.9743 2.5206 17 6 11.8685 -0.3035 1.2405 18 7 11.3305 0.7023 0.5859 19 14 13.7125 -0.5907 1.1599 20 1 14.3376 0.4449 0.2985 21 1 14.2863 -0.5096 2.5272 22 1 13.9796 -1.9358 0.5900 23 6 8.9945 -1.0078 0.6301 24 6 4.6810 -1.2065 -0.0694 25 6 3.3051 -1.2074 -0.0640 26 1 -1.0500 -0.0011 0.0004 27 1 2.7633 2.1430 0.1144 28 1 5.2193 2.1445 0.1130 29 1 6.9172 -2.8561 1.2396 30 1 5.7632 -1.5627 1.6552 31 1 6.9740 -2.4893 3.6622 32 1 7.2491 -0.7469 3.4229 33 1 9.1171 -2.9754 2.4941 34 1 9.3713 -1.9475 3.9244 35 1 11.8916 1.2974 0.0645 36 1 9.3769 -0.1865 0.0240 37 1 9.2719 -1.9593 0.1766 38 1 5.2215 -2.1400 -0.1233 39 1 2.7655 -2.1415 -0.1135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898580381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = 41.782003 kcal Electronic energy + Delta-G solvation = -21538.925540 eV Core-core repulsion = 18412.660392 eV Total energy + Delta-G solvation = -3126.265148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17791 -38.45083 -36.65246 -34.08377 -33.31355 -31.86742 -31.12233 -30.51653 -29.56038 -25.48022 -25.06862 -23.31929 -22.75573 -21.75379 -20.08851 -19.15178 -18.60672 -17.07873 -16.15254 -16.02322 -15.64136 -15.08411 -14.60001 -14.42102 -14.13658 -13.77086 -13.50738 -13.41811 -13.17067 -12.81936 -12.61315 -12.18625 -12.13638 -11.81512 -11.50049 -11.31604 -10.97520 -10.86548 -10.64471 -10.51459 -10.39983 -10.23941 -9.89605 -9.39690 -9.13245 -9.09110 -8.90759 -8.57086 -8.43510 -7.76472 -5.99321 -4.08566 0.58142 1.27167 2.50227 2.64046 3.31077 3.35694 3.38180 3.39333 3.65665 3.93945 4.02395 4.42866 4.77484 4.80199 4.85379 5.19831 5.30187 5.35091 5.37479 5.40455 5.51988 5.66146 5.78845 5.88919 5.97795 6.15633 6.19142 6.28078 6.30938 6.33937 6.59932 6.66303 6.72286 6.85074 6.96909 7.13235 7.25722 7.27724 7.63259 7.86578 7.98964 8.21370 8.38187 8.79574 8.95610 9.57086 11.05866 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034391 B = 0.003843 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.971433 B = 7284.671969 C = 7812.845206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.014 3.986 4 C -0.100 4.100 5 C -0.070 4.070 6 C -0.103 4.103 7 C 0.543 3.457 8 O -0.528 6.528 9 N -0.598 5.598 10 C 0.100 3.900 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.029 0.971 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.893 3.107 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.112 3.888 24 C -0.091 4.091 25 C -0.102 4.102 26 H 0.224 0.776 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.044 0.956 38 H 0.137 0.863 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 -4.016 0.554 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.014 3.986 4 C -0.118 4.118 5 C -0.088 4.088 6 C -0.106 4.106 7 C 0.330 3.670 8 O -0.405 6.405 9 N -0.329 5.329 10 C -0.024 4.024 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.021 3.979 14 H 0.047 0.953 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.720 3.280 20 H -0.213 1.213 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.008 4.008 24 C -0.109 4.109 25 C -0.120 4.120 26 H 0.241 0.759 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.062 0.938 38 H 0.154 0.846 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.097 -3.427 0.075 18.419 hybrid contribution 0.786 -0.210 -0.005 0.813 sum -17.311 -3.637 0.070 17.689 Atomic orbital electron populations 1.24867 0.95737 0.99551 0.99653 1.20079 0.92027 1.01119 1.01177 1.16106 0.86523 0.93946 1.02017 1.21124 0.93736 0.97102 0.99840 1.21168 0.93368 0.97882 0.96411 1.20366 0.94450 0.94151 1.01654 1.18267 0.86261 0.81708 0.80762 1.90823 1.69283 1.37163 1.43245 1.48444 1.09791 1.33277 1.41437 1.21959 0.96232 0.93365 0.90828 1.21953 0.98350 1.01464 0.95459 1.21632 0.92405 1.00299 1.00516 1.18956 0.94349 0.94230 0.90329 0.95264 1.21039 0.91152 1.13251 1.30647 0.92409 1.25059 0.98680 0.94939 0.95351 1.69877 1.35445 1.15696 1.30708 0.86652 0.85460 0.77875 0.77978 1.21255 1.20296 1.20249 1.22340 0.73391 1.02772 1.02299 1.21346 0.93785 0.97716 0.98066 1.21080 0.93696 0.97079 1.00163 0.75940 0.85138 0.84450 0.91927 0.90270 0.92172 0.92130 0.93172 0.92999 0.92564 0.85875 0.93761 0.84563 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.14 -1.57 13.23 -38.84 -0.51 -2.08 16 3 C 0.01 0.17 5.73 -106.87 -0.61 -0.44 16 4 C -0.10 -1.20 9.73 -39.26 -0.38 -1.58 16 5 C -0.07 -0.99 9.63 -39.26 -0.38 -1.37 16 6 C -0.10 -1.62 5.08 -104.91 -0.53 -2.15 16 7 C 0.54 11.04 7.30 -12.40 -0.09 10.95 16 8 O -0.53 -13.06 16.36 5.30 0.09 -12.98 16 9 N -0.60 -11.91 2.97 -173.94 -0.52 -12.43 16 10 C 0.10 1.54 4.92 -3.71 -0.02 1.52 16 11 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 12 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 13 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 14 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.52 -14.08 8.56 -34.44 -0.29 -14.37 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.88 -25.65 11.40 55.43 0.63 -25.02 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.11 2.69 5.41 -3.71 -0.02 2.67 16 24 C -0.09 -1.15 7.37 -39.25 -0.29 -1.44 16 25 C -0.10 -1.15 9.73 -39.26 -0.38 -1.53 16 26 H 0.22 0.97 7.80 -54.09 -0.42 0.55 16 27 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 30 H 0.08 1.05 4.81 -51.93 -0.25 0.80 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 3.47 5.13 -51.93 -0.27 3.21 16 37 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.14 1.56 6.70 -52.48 -0.35 1.21 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -31.79 327.92 -8.48 -40.27 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.06 Total: 2.04 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -3.54 Total: -13.02 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.12 Total: -37.45 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.79 -8.48 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898580381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.049 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds