Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39706 * 119.99621 * 199.95192 * 3 2 1 5 5 C 1.37600 * 120.00239 * 179.76349 * 4 3 2 6 6 C 1.39741 * 119.99730 * 0.49341 * 5 4 3 7 7 C 1.47692 * 120.00587 * 179.78640 * 6 5 4 8 8 O 1.21570 * 119.99824 * 221.89871 * 7 6 5 9 9 N 1.34769 * 119.99886 * 41.89154 * 7 6 5 10 10 C 1.46929 * 120.63239 * 5.58292 * 9 7 6 11 11 C 1.53623 * 108.54355 * 126.36226 * 10 9 7 12 12 C 1.53043 * 109.23844 * 54.85979 * 11 10 9 13 13 C 1.53037 * 109.53968 * 298.50465 * 12 11 10 14 14 H 1.09001 * 109.49688 * 301.42220 * 13 12 11 15 15 C 1.50696 * 109.50072 * 181.31963 * 13 12 11 16 16 H 1.07997 * 120.00158 * 0.16412 * 15 13 12 17 17 C 1.37877 * 120.00305 * 180.16570 * 15 13 12 18 18 N 1.31507 * 120.00350 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 119.99866 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47187 * 89.99833 * 19 17 15 21 21 H 1.48496 * 109.47474 * 210.00244 * 19 17 15 22 22 H 1.48504 * 109.47208 * 330.00091 * 19 17 15 23 23 C 1.46930 * 120.63072 * 185.85510 * 9 7 6 24 24 C 1.39743 * 119.99243 * 359.76132 * 6 5 4 25 25 C 1.37598 * 119.99590 * 0.02562 * 24 6 5 26 26 H 4.51944 * 14.06427 * 0.02562 * 4 2 1 27 27 H 1.07997 * 119.99972 * 0.02562 * 4 3 2 28 28 H 1.08007 * 120.00077 * 180.25475 * 5 4 3 29 29 H 1.08997 * 109.58705 * 246.19758 * 10 9 7 30 30 H 1.09001 * 109.58484 * 6.62014 * 10 9 7 31 31 H 1.08996 * 109.64061 * 294.86643 * 11 10 9 32 32 H 1.09006 * 109.42994 * 174.71896 * 11 10 9 33 33 H 1.09008 * 109.45794 * 178.48896 * 12 11 10 34 34 H 1.08997 * 109.46439 * 58.53389 * 12 11 10 35 35 H 0.97002 * 119.99991 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.58722 * 353.37656 * 23 9 7 37 37 H 1.09004 * 109.58424 * 113.65721 * 23 9 7 38 38 H 1.07999 * 120.00600 * 179.97438 * 24 6 5 39 39 H 1.07999 * 120.00152 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3040 1.1383 0.4129 5 6 4.6799 1.1373 0.4175 6 6 5.3793 0.0020 -0.0005 7 6 6.8562 0.0025 0.0000 8 8 7.4645 -0.4897 -0.9305 9 7 7.5295 0.5486 1.0318 10 6 6.8136 1.0372 2.2182 11 6 7.4251 0.3779 3.4638 12 6 8.9322 0.6430 3.4861 13 6 9.5796 0.0221 2.2462 14 1 9.3792 -1.0492 2.2290 15 6 11.0678 0.2556 2.2854 16 1 11.5088 0.7909 3.1133 17 6 11.8665 -0.2140 1.2644 18 7 13.1653 -0.0107 1.2988 19 14 11.1039 -1.1404 -0.1673 20 1 10.7301 -0.1793 -1.2359 21 1 12.0843 -2.1189 -0.7024 22 1 9.8908 -1.8594 0.2982 23 6 8.9930 0.6722 0.9892 24 6 4.6810 -1.1340 -0.4185 25 6 3.3050 -1.1343 -0.4189 26 1 -1.0500 -0.0011 0.0001 27 1 2.7635 2.0170 0.7324 28 1 5.2195 2.0154 0.7406 29 1 6.9165 2.1201 2.2868 30 1 5.7589 0.7723 2.1433 31 1 7.2451 -0.6967 3.4352 32 1 6.9682 0.8002 4.3588 33 1 9.3656 0.1995 4.3826 34 1 9.1119 1.7181 3.4899 35 1 13.7273 -0.3414 0.5806 36 1 9.3768 0.1663 0.1032 37 1 9.2699 1.7260 0.9570 38 1 5.2212 -2.0114 -0.7420 39 1 2.7653 -2.0123 -0.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898580382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = 49.340862 kcal Electronic energy + Delta-G solvation = -21703.907392 eV Core-core repulsion = 18577.970020 eV Total energy + Delta-G solvation = -3125.937372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43706 -38.70606 -36.94948 -34.22874 -33.37376 -32.02601 -31.30054 -30.85642 -30.09835 -25.69288 -25.24668 -23.51250 -22.85559 -22.00551 -20.12245 -19.27750 -18.87324 -17.29889 -16.72123 -16.25448 -15.86257 -15.38989 -14.66075 -14.60615 -14.12761 -13.97724 -13.72539 -13.64000 -13.37796 -13.06425 -12.83686 -12.49385 -12.40677 -12.09622 -11.64020 -11.51841 -11.17875 -11.07714 -10.74853 -10.62397 -10.41095 -10.12217 -9.80816 -9.65009 -9.29594 -9.17979 -9.09496 -8.73765 -8.60578 -8.10782 -6.11090 -4.12912 0.43172 1.13206 2.41005 2.48258 3.09264 3.34263 3.38386 3.48110 3.58457 3.76401 3.91790 4.42200 4.56656 4.65437 4.69222 5.04230 5.16835 5.21130 5.23649 5.26942 5.34015 5.47699 5.63436 5.75005 5.77943 5.98480 6.03708 6.07297 6.12395 6.15510 6.20801 6.37873 6.49727 6.56500 6.63837 6.72946 6.82737 7.12928 7.18482 7.42067 7.70509 7.78072 8.40815 8.50462 8.91937 9.50497 11.00787 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.004455 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.215014 B = 6283.646312 C = 6944.362452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C 0.019 3.981 4 C -0.101 4.101 5 C -0.089 4.089 6 C -0.107 4.107 7 C 0.546 3.454 8 O -0.537 6.537 9 N -0.599 5.599 10 C 0.099 3.901 11 C -0.136 4.136 12 C -0.101 4.101 13 C 0.005 3.995 14 H 0.031 0.969 15 C -0.517 4.517 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.879 3.121 20 H -0.273 1.273 21 H -0.295 1.295 22 H -0.262 1.262 23 C 0.102 3.898 24 C -0.068 4.068 25 C -0.100 4.100 26 H 0.225 0.775 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.265 0.735 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.137 0.863 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.511 1.932 0.455 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C 0.019 3.981 4 C -0.119 4.119 5 C -0.107 4.107 6 C -0.110 4.110 7 C 0.333 3.667 8 O -0.416 6.416 9 N -0.331 5.331 10 C -0.023 4.023 11 C -0.175 4.175 12 C -0.138 4.138 13 C -0.015 4.015 14 H 0.049 0.951 15 C -0.555 4.555 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.709 3.291 20 H -0.200 1.200 21 H -0.223 1.223 22 H -0.187 1.187 23 C -0.019 4.019 24 C -0.087 4.087 25 C -0.118 4.118 26 H 0.241 0.759 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.155 0.845 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.961 1.655 -0.119 23.021 hybrid contribution -0.447 -0.439 -0.851 1.057 sum -23.408 1.216 -0.970 23.460 Atomic orbital electron populations 1.24898 0.95757 0.99325 0.99275 1.20048 0.92007 1.01329 1.01405 1.16117 0.86604 0.94759 1.00601 1.21097 0.93647 0.97446 0.99737 1.21346 0.93859 0.97963 0.97556 1.20216 0.93797 0.95607 1.01363 1.18358 0.86696 0.78690 0.82910 1.90798 1.69446 1.45502 1.35815 1.48369 1.09000 1.59121 1.16602 1.22127 0.96289 0.98609 0.85323 1.22069 0.98274 1.00850 0.96261 1.21449 0.92072 1.00737 0.99585 1.19480 0.96077 0.95875 0.90022 0.95104 1.20950 0.88607 1.37353 1.08568 0.90433 1.25045 0.94741 0.95178 0.98013 1.69888 1.04009 1.45995 1.33426 0.86994 0.78589 0.80531 0.83014 1.20007 1.22286 1.18671 1.22667 0.75344 1.01591 1.02261 1.21148 0.93467 0.97821 0.96270 1.21131 0.93646 0.97564 0.99430 0.75863 0.84993 0.84430 0.91294 0.89814 0.91958 0.91563 0.92168 0.92465 0.92495 0.90252 0.91273 0.84513 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 19.25 29.55 0.57 -0.79 16 2 C -0.15 -1.49 13.23 -38.84 -0.51 -2.00 16 3 C 0.02 0.21 5.73 -106.87 -0.61 -0.40 16 4 C -0.10 -1.03 9.73 -39.27 -0.38 -1.41 16 5 C -0.09 -1.02 7.37 -39.25 -0.29 -1.31 16 6 C -0.11 -1.55 5.08 -104.91 -0.53 -2.08 16 7 C 0.55 10.33 7.29 -12.40 -0.09 10.24 16 8 O -0.54 -12.44 16.36 5.30 0.09 -12.36 16 9 N -0.60 -11.07 2.97 -173.67 -0.52 -11.58 16 10 C 0.10 1.38 4.96 -3.48 -0.02 1.36 16 11 C -0.14 -1.99 6.10 -26.39 -0.16 -2.15 16 12 C -0.10 -1.86 5.10 -26.69 -0.14 -2.00 16 13 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 14 H 0.03 0.77 7.21 -51.93 -0.37 0.39 16 15 C -0.52 -14.27 9.15 -34.44 -0.31 -14.59 16 16 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 18 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 19 Si 0.88 23.36 24.32 -169.99 -4.13 19.22 16 20 H -0.27 -7.33 6.92 56.52 0.39 -6.94 16 21 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 22 H -0.26 -6.98 6.53 56.52 0.37 -6.61 16 23 C 0.10 2.26 5.11 -3.71 -0.02 2.25 16 24 C -0.07 -0.89 9.63 -39.25 -0.38 -1.27 16 25 C -0.10 -1.10 9.73 -39.26 -0.38 -1.48 16 26 H 0.22 0.82 7.80 -54.09 -0.42 0.40 16 27 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 28 H 0.14 1.39 6.73 -52.48 -0.35 1.03 16 29 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.08 0.98 4.81 -51.93 -0.25 0.73 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.08 2.00 2.31 -51.93 -0.12 1.88 16 37 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -33.73 321.08 -7.40 -41.13 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.92 Total: -0.91 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -3.53 Total: -13.66 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.26 Total: -38.26 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.13 Total: 19.22 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.73 -7.40 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898580382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.470 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds