Wall clock time and date at job start Tue Mar 31 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39706 * 119.99621 * 199.95192 * 3 2 1 5 5 C 1.37600 * 120.00239 * 179.76349 * 4 3 2 6 6 C 1.39741 * 119.99730 * 0.49341 * 5 4 3 7 7 C 1.47692 * 120.00587 * 179.78640 * 6 5 4 8 8 O 1.21570 * 119.99824 * 221.89871 * 7 6 5 9 9 N 1.34769 * 119.99886 * 41.89154 * 7 6 5 10 10 C 1.46929 * 120.63239 * 5.58292 * 9 7 6 11 11 C 1.53623 * 108.54355 * 126.36226 * 10 9 7 12 12 C 1.53043 * 109.23844 * 54.85979 * 11 10 9 13 13 C 1.53037 * 109.53968 * 298.50465 * 12 11 10 14 14 H 1.09001 * 109.49688 * 301.42220 * 13 12 11 15 15 C 1.50696 * 109.50072 * 181.31963 * 13 12 11 16 16 H 1.07997 * 120.00158 * 0.16412 * 15 13 12 17 17 C 1.37877 * 120.00305 * 180.16570 * 15 13 12 18 18 N 1.31507 * 120.00350 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 119.99866 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47187 * 89.99833 * 19 17 15 21 21 H 1.48496 * 109.47474 * 210.00244 * 19 17 15 22 22 H 1.48504 * 109.47208 * 330.00091 * 19 17 15 23 23 C 1.46930 * 120.63072 * 185.85510 * 9 7 6 24 24 C 1.39743 * 119.99243 * 359.76132 * 6 5 4 25 25 C 1.37598 * 119.99590 * 0.02562 * 24 6 5 26 26 H 4.51944 * 14.06427 * 0.02562 * 4 2 1 27 27 H 1.07997 * 119.99972 * 0.02562 * 4 3 2 28 28 H 1.08007 * 120.00077 * 180.25475 * 5 4 3 29 29 H 1.08997 * 109.58705 * 246.19758 * 10 9 7 30 30 H 1.09001 * 109.58484 * 6.62014 * 10 9 7 31 31 H 1.08996 * 109.64061 * 294.86643 * 11 10 9 32 32 H 1.09006 * 109.42994 * 174.71896 * 11 10 9 33 33 H 1.09008 * 109.45794 * 178.48896 * 12 11 10 34 34 H 1.08997 * 109.46439 * 58.53389 * 12 11 10 35 35 H 0.97002 * 119.99991 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.58722 * 353.37656 * 23 9 7 37 37 H 1.09004 * 109.58424 * 113.65721 * 23 9 7 38 38 H 1.07999 * 120.00600 * 179.97438 * 24 6 5 39 39 H 1.07999 * 120.00152 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3040 1.1383 0.4129 5 6 4.6799 1.1373 0.4175 6 6 5.3793 0.0020 -0.0005 7 6 6.8562 0.0025 0.0000 8 8 7.4645 -0.4897 -0.9305 9 7 7.5295 0.5486 1.0318 10 6 6.8136 1.0372 2.2182 11 6 7.4251 0.3779 3.4638 12 6 8.9322 0.6430 3.4861 13 6 9.5796 0.0221 2.2462 14 1 9.3792 -1.0492 2.2290 15 6 11.0678 0.2556 2.2854 16 1 11.5088 0.7909 3.1133 17 6 11.8665 -0.2140 1.2644 18 7 13.1653 -0.0107 1.2988 19 14 11.1039 -1.1404 -0.1673 20 1 10.7301 -0.1793 -1.2359 21 1 12.0843 -2.1189 -0.7024 22 1 9.8908 -1.8594 0.2982 23 6 8.9930 0.6722 0.9892 24 6 4.6810 -1.1340 -0.4185 25 6 3.3050 -1.1343 -0.4189 26 1 -1.0500 -0.0011 0.0001 27 1 2.7635 2.0170 0.7324 28 1 5.2195 2.0154 0.7406 29 1 6.9165 2.1201 2.2868 30 1 5.7589 0.7723 2.1433 31 1 7.2451 -0.6967 3.4352 32 1 6.9682 0.8002 4.3588 33 1 9.3656 0.1995 4.3826 34 1 9.1119 1.7181 3.4899 35 1 13.7273 -0.3414 0.5806 36 1 9.3768 0.1663 0.1032 37 1 9.2699 1.7260 0.9570 38 1 5.2212 -2.0114 -0.7420 39 1 2.7653 -2.0123 -0.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898580382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:59 Heat of formation + Delta-G solvation = 28.260057 kcal Electronic energy + Delta-G solvation = -21704.821524 eV Core-core repulsion = 18577.970020 eV Total energy + Delta-G solvation = -3126.851504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69559 -39.80341 -38.47866 -35.52785 -34.75460 -33.68103 -32.43237 -32.05280 -31.24489 -27.19259 -26.90741 -24.67172 -23.89774 -23.39320 -21.62510 -20.31982 -19.96765 -18.98027 -18.52862 -17.51546 -16.68695 -16.59594 -16.47289 -15.68215 -15.58172 -15.44582 -15.05496 -14.81944 -14.67675 -14.52650 -14.14785 -14.01830 -13.76148 -13.29443 -13.19466 -12.90918 -12.45210 -12.35542 -12.19679 -12.11877 -11.78828 -11.62270 -11.42539 -11.34198 -11.07739 -10.89472 -10.81357 -10.06633 -9.74332 -9.51373 -8.41299 -6.42705 -0.46898 0.28525 1.20231 1.26861 1.40110 1.43375 1.77978 1.87868 2.14806 2.19328 2.91914 2.95756 3.26345 3.42992 3.81454 3.86212 3.97819 4.10405 4.12085 4.24450 4.39754 4.41986 4.48554 4.53043 4.59773 4.69343 4.84589 4.89348 4.94147 4.95995 5.10033 5.19568 5.25569 5.30088 5.33465 5.36086 5.51478 5.61006 5.67192 5.74766 6.24251 6.38088 6.57522 6.66379 7.01867 7.23092 8.74691 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.004455 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.215014 B = 6283.646312 C = 6944.362452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.205 4.205 3 C 0.026 3.974 4 C -0.095 4.095 5 C -0.079 4.079 6 C -0.131 4.131 7 C 0.541 3.459 8 O -0.594 6.594 9 N -0.601 5.601 10 C 0.094 3.906 11 C -0.128 4.128 12 C -0.098 4.098 13 C 0.004 3.996 14 H 0.010 0.990 15 C -0.510 4.510 16 H 0.054 0.946 17 C 0.031 3.969 18 N -0.936 5.936 19 Si 0.935 3.065 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.270 1.270 23 C 0.107 3.893 24 C -0.078 4.078 25 C -0.101 4.101 26 H 0.262 0.738 27 H 0.162 0.838 28 H 0.155 0.845 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.267 0.733 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.230 3.112 1.468 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.205 4.205 3 C 0.026 3.974 4 C -0.112 4.112 5 C -0.098 4.098 6 C -0.134 4.134 7 C 0.331 3.669 8 O -0.476 6.476 9 N -0.331 5.331 10 C -0.026 4.026 11 C -0.166 4.166 12 C -0.135 4.135 13 C -0.016 4.016 14 H 0.029 0.971 15 C -0.548 4.548 16 H 0.072 0.928 17 C -0.168 4.168 18 N -0.576 5.576 19 Si 0.765 3.235 20 H -0.209 1.209 21 H -0.221 1.221 22 H -0.196 1.196 23 C -0.015 4.015 24 C -0.097 4.097 25 C -0.118 4.118 26 H 0.278 0.722 27 H 0.179 0.821 28 H 0.173 0.827 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.715 2.844 0.930 27.876 hybrid contribution 0.830 -0.782 -1.112 1.592 sum -26.886 2.062 -0.181 26.965 Atomic orbital electron populations 1.25845 0.96493 0.96523 0.95980 1.20204 0.92353 1.03917 1.04025 1.16353 0.87621 0.94537 0.98882 1.21392 0.92973 0.98182 0.98687 1.21470 0.94461 0.97160 0.96681 1.19907 0.90817 0.97693 1.04987 1.19084 0.88600 0.77257 0.81919 1.90751 1.71040 1.47943 1.37893 1.48384 1.07427 1.59126 1.18190 1.22523 0.97199 1.00079 0.82834 1.22038 0.95201 1.00852 0.98546 1.21387 0.94854 1.00616 0.96669 1.19420 0.93745 0.95201 0.93198 0.97143 1.21312 0.91244 1.35321 1.06948 0.92796 1.25582 0.94971 0.96279 0.99972 1.69974 1.05056 1.48034 1.34547 0.86117 0.77295 0.79306 0.80807 1.20883 1.22058 1.19568 1.22177 0.78347 1.00992 0.99985 1.21123 0.94442 0.97328 0.96820 1.21268 0.92621 0.98666 0.99285 0.72214 0.82057 0.82702 0.88520 0.86934 0.92858 0.87175 0.92533 0.91704 0.92328 0.93493 0.90965 0.85813 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 19.25 74.32 1.43 0.02 16 2 C -0.20 -3.35 13.23 30.01 0.40 -2.95 16 3 C 0.03 0.49 5.73 -21.32 -0.12 0.37 16 4 C -0.09 -1.56 9.73 22.47 0.22 -1.35 16 5 C -0.08 -1.59 7.37 22.48 0.17 -1.42 16 6 C -0.13 -3.67 5.08 -20.05 -0.10 -3.77 16 7 C 0.54 20.65 7.29 86.74 0.63 21.28 16 8 O -0.59 -28.70 16.36 -3.94 -0.06 -28.76 16 9 N -0.60 -21.76 2.97 -821.64 -2.44 -24.19 16 10 C 0.09 2.31 4.96 86.51 0.43 2.74 16 11 C -0.13 -3.35 6.10 30.82 0.19 -3.16 16 12 C -0.10 -3.48 5.10 30.62 0.16 -3.32 16 13 C 0.00 0.19 1.84 -11.46 -0.02 0.17 16 14 H 0.01 0.53 7.21 -2.39 -0.02 0.51 16 15 C -0.51 -28.98 9.15 25.60 0.23 -28.74 16 16 H 0.05 3.27 7.99 -2.91 -0.02 3.24 16 17 C 0.03 1.85 5.45 84.66 0.46 2.31 16 18 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 19 Si 0.93 50.96 24.32 68.60 1.67 52.62 16 20 H -0.28 -15.57 6.92 99.48 0.69 -14.88 16 21 H -0.29 -15.62 7.11 99.48 0.71 -14.91 16 22 H -0.27 -14.90 6.53 99.48 0.65 -14.25 16 23 C 0.11 4.83 5.11 86.36 0.44 5.28 16 24 C -0.08 -2.02 9.63 22.48 0.22 -1.80 16 25 C -0.10 -2.04 9.73 22.48 0.22 -1.82 16 26 H 0.26 0.36 7.80 -4.42 -0.03 0.32 16 27 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.16 2.50 6.73 -2.91 -0.02 2.48 16 29 H 0.10 1.90 8.13 -2.39 -0.02 1.88 16 30 H 0.11 2.18 4.81 -2.39 -0.01 2.17 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 36 H 0.05 2.45 2.31 -2.39 -0.01 2.44 16 37 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -78.33 321.08 5.39 -72.94 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 0.98 Total: 2.48 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.94 Total: -16.17 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.14 Total: -83.11 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 1.67 Total: 52.62 kcal Total: -78.33 5.39 -72.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898580382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.201 kcal (2) G-P(sol) polarization free energy of solvation -78.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds