Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47227 * 2 1 4 4 C 1.53006 * 109.46969 * 239.99647 * 2 1 3 5 5 C 1.50703 * 109.47130 * 120.00196 * 2 1 3 6 6 N 1.30252 * 125.62392 * 60.31153 * 5 2 1 7 7 C 1.34476 * 108.70312 * 180.18710 * 6 5 2 8 8 C 1.50705 * 126.16500 * 179.82677 * 7 6 5 9 9 S 1.81405 * 109.46754 * 269.71789 * 8 7 6 10 10 C 1.81399 * 102.99706 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47162 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46974 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00187 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99983 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46797 * 89.99757 * 17 15 13 19 19 H 1.48500 * 109.47411 * 209.99962 * 17 15 13 20 20 H 1.48501 * 109.47147 * 330.00347 * 17 15 13 21 21 C 1.34330 * 107.66647 * 359.56949 * 7 6 5 22 22 O 1.33975 * 125.61748 * 240.02271 * 5 2 1 23 23 H 1.09006 * 109.46621 * 299.99958 * 1 2 3 24 24 H 1.08998 * 109.47575 * 59.99847 * 1 2 3 25 25 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47434 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47311 * 300.00025 * 3 2 1 28 28 H 1.09002 * 109.47530 * 59.99752 * 3 2 1 29 29 H 1.08991 * 109.47016 * 300.00181 * 4 2 1 30 30 H 1.09006 * 109.46357 * 60.00146 * 4 2 1 31 31 H 1.08997 * 109.46793 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47022 * 149.72062 * 8 7 6 33 33 H 1.08998 * 109.46894 * 29.71618 * 8 7 6 34 34 H 1.09004 * 109.47089 * 299.99939 * 10 9 8 35 35 H 1.09004 * 109.47568 * 59.99949 * 10 9 8 36 36 H 1.09000 * 109.46497 * 299.99702 * 11 10 9 37 37 H 1.08996 * 109.46876 * 60.00092 * 11 10 9 38 38 H 1.08993 * 109.46955 * 300.00073 * 12 11 10 39 39 H 1.09000 * 109.47050 * 59.99902 * 12 11 10 40 40 H 0.97002 * 120.00081 * 179.97438 * 16 15 13 41 41 H 1.08001 * 126.44159 * 180.24206 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 2.0323 -0.7105 1.2305 6 7 1.7908 -1.9521 1.5414 7 6 2.3990 -2.2306 2.7079 8 6 2.3738 -3.5529 3.4305 9 16 0.9664 -3.5899 4.5745 10 6 1.1037 -5.2301 5.3372 11 6 -0.0318 -5.4206 6.3448 12 6 0.0836 -6.8043 6.9877 13 6 -1.0345 -6.9917 7.9805 14 1 -1.7550 -6.2026 8.1377 15 6 -1.1369 -8.1700 8.6891 16 7 -0.2592 -9.1305 8.4981 17 14 -2.5224 -8.4020 9.9204 18 1 -3.6970 -9.0005 9.2367 19 1 -2.0706 -9.3046 11.0097 20 1 -2.9010 -7.0854 10.4934 21 6 3.0378 -1.1195 3.1101 22 8 2.8055 -0.1706 2.1822 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7209 -1.2495 32 1 3.3005 -3.6788 3.9904 33 1 2.2744 -4.3611 2.7059 34 1 1.0363 -5.9966 4.5652 35 1 2.0622 -5.3136 5.8494 36 1 0.0352 -4.6541 7.1169 37 1 -0.9901 -5.3373 5.8322 38 1 0.0164 -7.5704 6.2153 39 1 1.0420 -6.8880 7.5001 40 1 -0.3311 -9.9594 8.9969 41 1 3.6267 -1.0077 4.0086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901815131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = -14.410441 kcal Electronic energy + Delta-G solvation = -19000.516193 eV Core-core repulsion = 16007.258308 eV Total energy + Delta-G solvation = -2993.257884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.55247 -37.32246 -35.33696 -34.44066 -32.01536 -31.38318 -27.94335 -27.67251 -27.61863 -27.17182 -23.49516 -23.40854 -21.56043 -20.26345 -19.69912 -17.30563 -16.91229 -16.42322 -15.65183 -15.57492 -15.04575 -14.63133 -14.54994 -14.39120 -14.10719 -13.85208 -13.35455 -12.77922 -12.72398 -12.63850 -12.45521 -12.06886 -11.96330 -11.79634 -11.69306 -11.53996 -11.36927 -11.14869 -10.87766 -10.84677 -10.64427 -10.50712 -9.82531 -9.78299 -9.30622 -9.11844 -8.83034 -8.36307 -7.42189 -6.01306 -4.03714 1.15248 1.76000 2.50426 2.73052 2.93595 3.32608 3.38558 3.42611 3.60362 4.35084 4.44023 4.45921 4.46002 4.64413 4.76761 5.13051 5.20866 5.23981 5.34661 5.34909 5.35785 5.39287 5.47746 5.48878 5.52041 5.63388 5.64747 5.68647 5.78058 5.88707 5.92800 6.09932 6.14265 6.56501 6.72773 7.02672 7.58462 7.63980 7.76261 7.97741 8.39728 9.02714 9.60457 11.10049 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.040659 B = 0.002381 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.494605 B =11755.929153 C =11954.763236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.033 3.967 3 C -0.147 4.147 4 C -0.139 4.139 5 C 0.200 3.800 6 N -0.465 5.465 7 C 0.007 3.993 8 C -0.010 4.010 9 S -0.262 6.262 10 C -0.075 4.075 11 C -0.094 4.094 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.060 4.060 22 O -0.199 6.199 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 20.028 -18.518 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 C -0.204 4.204 4 C -0.197 4.197 5 C -0.008 4.008 6 N -0.193 5.193 7 C -0.113 4.113 8 C -0.158 4.158 9 S -0.033 6.033 10 C -0.223 4.223 11 C -0.133 4.133 12 C -0.011 4.011 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.133 4.133 22 O -0.085 6.085 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.104 20.250 -18.647 28.429 hybrid contribution 0.703 -0.882 1.119 1.589 sum 7.807 19.368 -17.527 27.263 Atomic orbital electron populations 1.21910 0.91531 1.03748 1.02610 1.19110 0.96578 0.94370 0.86750 1.21916 1.01787 0.93670 1.03045 1.21898 1.01353 1.01375 0.95031 1.26218 0.93308 0.88617 0.92668 1.70256 1.22083 1.13481 1.13528 1.20871 1.00167 0.96567 0.93707 1.21439 1.00323 0.94874 0.99196 1.87112 1.39555 1.26568 1.50098 1.23667 1.04247 0.92917 1.01444 1.21463 0.94853 1.01359 0.95665 1.19105 0.97397 0.89361 0.95271 1.21223 1.11867 1.00705 1.22054 0.92547 1.25022 0.96237 0.96012 0.97202 1.69961 1.35613 1.05926 1.42038 0.86568 0.82284 0.78073 0.80947 1.20614 1.21211 1.19829 1.24783 1.05780 0.87090 0.95685 1.84443 1.54694 1.40630 1.28735 0.92121 0.90988 0.90943 0.91876 0.90970 0.91768 0.91036 0.90975 0.92300 0.88645 0.88503 0.90416 0.90459 0.92405 0.92364 0.96399 0.96417 0.92971 0.76602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.46 37.16 0.31 -0.78 16 2 C 0.03 0.27 0.99 -155.66 -0.15 0.12 16 3 C -0.15 -0.92 8.02 37.15 0.30 -0.62 16 4 C -0.14 -0.97 8.46 37.16 0.31 -0.66 16 5 C 0.20 2.31 6.47 -12.95 -0.08 2.23 16 6 N -0.46 -6.40 11.29 -7.35 -0.08 -6.48 16 7 C 0.01 0.09 6.37 -82.81 -0.53 -0.43 16 8 C -0.01 -0.13 6.48 36.01 0.23 0.10 16 9 S -0.26 -4.26 21.72 -107.50 -2.33 -6.59 16 10 C -0.07 -1.31 5.94 37.16 0.22 -1.09 16 11 C -0.09 -2.00 5.16 -26.73 -0.14 -2.14 16 12 C 0.03 0.71 4.97 -27.88 -0.14 0.58 16 13 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 14 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.06 -0.66 12.08 29.35 0.35 -0.31 16 22 O -0.20 -2.28 10.17 5.36 0.05 -2.23 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.10 1.26 8.14 -51.92 -0.42 0.83 16 34 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 35 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.22 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -32.28 357.82 -8.12 -40.40 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -7.15 Total: -4.38 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 0.28 Total: -16.67 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.65 Total: -32.75 kcal Atomic # 8 Polarization: -2.28 SS G_CDS: 0.05 Total: -2.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -2.33 Total: -6.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.28 -8.12 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901815131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.990 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds