Wall clock time and date at job start Tue Mar 31 2020 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00261 * 2 1 4 4 H 1.48504 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46965 * 299.99374 * 3 2 1 6 6 H 1.48497 * 109.47181 * 59.99734 * 3 2 1 7 7 C 1.37883 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99782 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47351 * 299.99562 * 9 7 2 11 11 O 1.42901 * 109.47293 * 59.99898 * 9 7 2 12 12 C 1.52999 * 109.46796 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.47236 * 179.97438 * 12 9 7 14 14 C 1.46899 * 111.00075 * 174.70334 * 13 12 9 15 15 H 1.08996 * 109.47448 * 37.99417 * 14 13 12 16 16 C 1.52998 * 109.47068 * 277.98961 * 14 13 12 17 17 C 1.52995 * 109.47362 * 302.54733 * 16 14 13 18 18 O 1.42899 * 109.47360 * 174.88971 * 17 16 14 19 19 C 1.50705 * 109.47017 * 157.99472 * 14 13 12 20 20 C 1.38223 * 120.01104 * 24.99860 * 19 14 13 21 21 C 1.38224 * 120.01960 * 179.72520 * 20 19 14 22 22 C 1.38266 * 120.05525 * 0.02562 * 21 20 19 23 23 C 1.38175 * 120.02577 * 359.97438 * 22 21 20 24 24 C 1.38432 * 120.00969 * 204.72097 * 19 14 13 25 25 F 1.35101 * 120.03027 * 0.25513 * 24 19 14 26 26 H 0.97008 * 119.99707 * 0.02562 * 1 2 3 27 27 H 0.96707 * 113.99780 * 59.99455 * 11 9 7 28 28 H 1.09002 * 109.47415 * 60.00294 * 12 9 7 29 29 H 1.08998 * 109.47688 * 299.99895 * 12 9 7 30 30 H 1.00902 * 110.99906 * 298.65740 * 13 12 9 31 31 H 1.09004 * 109.47175 * 62.54672 * 16 14 13 32 32 H 1.08996 * 109.47265 * 182.54515 * 16 14 13 33 33 H 1.08997 * 109.47191 * 294.89078 * 17 16 14 34 34 H 1.09003 * 109.47379 * 54.89456 * 17 16 14 35 35 H 0.96706 * 114.00257 * 180.02562 * 18 17 16 36 36 H 1.07994 * 119.98667 * 359.74237 * 20 19 14 37 37 H 1.08004 * 119.96879 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.98857 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.01277 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 0.4297 -2.5751 -1.1665 12 6 2.2450 -3.6621 0.0005 13 7 1.5105 -4.9343 0.0012 14 6 2.4298 -6.0731 -0.1254 15 1 3.3363 -5.8736 0.4460 16 6 2.7898 -6.2766 -1.5985 17 6 1.5116 -6.4937 -2.4106 18 8 1.8365 -6.5650 -3.8004 19 6 1.7649 -7.3169 0.4056 20 6 0.3859 -7.4100 0.4228 21 6 -0.2241 -8.5530 0.9045 22 6 0.5441 -9.6042 1.3701 23 6 1.9227 -9.5133 1.3538 24 6 2.5350 -8.3689 0.8709 25 9 3.8829 -8.2792 0.8541 26 1 -0.4850 0.8401 -0.0004 27 1 0.9222 -2.5299 -1.9976 28 1 2.8717 -3.6045 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.9387 -5.0213 0.8280 31 1 3.3111 -5.3944 -1.9703 32 1 3.4358 -7.1489 -1.6975 33 1 1.0376 -7.4248 -2.1001 34 1 0.8269 -5.6629 -2.2398 35 1 1.0720 -6.7017 -4.3766 36 1 -0.2151 -6.5895 0.0596 37 1 -1.3017 -8.6247 0.9180 38 1 0.0664 -10.4965 1.7466 39 1 2.5225 -10.3343 1.7179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930822681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:32 Heat of formation + Delta-G solvation = -123.840902 kcal Electronic energy + Delta-G solvation = -22594.250132 eV Core-core repulsion = 19030.033811 eV Total energy + Delta-G solvation = -3564.216321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.94323 -39.58306 -37.31624 -36.25660 -34.99124 -32.09756 -31.59348 -30.69773 -29.93426 -27.80353 -25.37126 -24.05273 -22.56715 -22.41638 -20.56822 -19.80474 -17.67196 -17.22496 -16.93298 -16.42133 -16.27216 -15.65611 -15.26965 -14.64785 -14.59289 -14.49470 -14.10779 -13.83780 -13.62876 -13.54634 -13.12728 -12.70593 -12.48292 -12.39205 -12.01721 -11.71567 -11.56557 -11.20369 -11.12539 -10.93221 -10.81817 -10.71127 -10.38900 -10.05421 -9.66924 -9.04819 -8.99188 -8.73370 -8.58011 -8.13682 -7.84450 -6.00940 -4.18910 1.04943 1.11786 3.26818 3.35255 3.38641 3.48855 4.15400 4.31637 4.41090 4.53157 4.57266 4.76877 4.89060 5.15503 5.26627 5.27371 5.33996 5.49069 5.58966 5.71710 5.81585 5.96302 5.99063 6.00648 6.12524 6.22156 6.25293 6.29826 6.35376 6.41529 6.51367 6.79753 6.83981 7.45699 7.65712 7.82225 7.84966 7.87973 8.20026 8.85090 9.45760 9.61840 11.03227 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.004127 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.553759 B = 6782.394301 C = 7018.837352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.573 4.573 8 H 0.055 0.945 9 C 0.238 3.762 10 H 0.051 0.949 11 O -0.555 6.555 12 C 0.032 3.968 13 N -0.671 5.671 14 C 0.127 3.873 15 H 0.055 0.945 16 C -0.098 4.098 17 C 0.080 3.920 18 O -0.582 6.582 19 C -0.114 4.114 20 C -0.077 4.077 21 C -0.131 4.131 22 C -0.098 4.098 23 C -0.158 4.158 24 C 0.099 3.901 25 F -0.139 7.139 26 H 0.259 0.741 27 H 0.343 0.657 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.339 0.661 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.375 0.625 36 H 0.148 0.852 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -18.676 0.506 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.180 3.820 10 H 0.069 0.931 11 O -0.356 6.356 12 C -0.096 4.096 13 N -0.303 5.303 14 C 0.016 3.984 15 H 0.073 0.927 16 C -0.136 4.136 17 C 0.003 3.997 18 O -0.388 6.388 19 C -0.116 4.116 20 C -0.095 4.095 21 C -0.149 4.149 22 C -0.116 4.116 23 C -0.177 4.177 24 C 0.080 3.920 25 F -0.118 7.118 26 H 0.069 0.931 27 H 0.186 0.814 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.221 0.779 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.568 -18.482 0.547 18.499 hybrid contribution 1.140 0.844 0.469 1.494 sum 1.708 -17.638 1.015 17.749 Atomic orbital electron populations 1.70091 1.05900 1.26268 1.47179 1.25014 0.94675 0.99072 0.93830 0.86630 0.80241 0.83906 0.77680 1.19746 1.20852 1.20925 1.21680 0.93198 0.91592 1.54716 0.92692 1.19257 0.87733 0.88634 0.86396 0.93082 1.86541 1.37776 1.96289 1.15017 1.22995 0.97554 0.89561 0.99511 1.60675 1.23023 1.00940 1.45634 1.20314 0.94591 0.88065 0.95392 0.92680 1.21375 0.97360 1.02186 0.92671 1.22186 0.97422 1.00243 0.79841 1.86419 1.37786 1.96462 1.18098 1.20116 0.94525 0.95873 1.01055 1.21173 0.93209 0.98339 0.96743 1.21272 1.00433 0.93649 0.99580 1.20995 0.92690 0.99033 0.98868 1.21082 0.95855 0.97361 1.03369 1.17594 0.76888 0.95645 1.01909 1.91486 1.29331 1.96508 1.94436 0.93080 0.81378 0.95784 0.91798 0.84244 0.90594 0.92080 0.94762 0.90659 0.77917 0.83433 0.85295 0.85326 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 12.84 55.43 0.71 -24.47 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.57 -15.57 8.76 -34.44 -0.30 -15.88 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.24 5.84 3.08 -27.88 -0.09 5.76 16 10 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 11 O -0.55 -13.94 12.60 -35.23 -0.44 -14.38 16 12 C 0.03 0.64 5.07 -3.82 -0.02 0.62 16 13 N -0.67 -11.07 4.36 -107.95 -0.47 -11.55 16 14 C 0.13 1.87 2.29 -68.86 -0.16 1.71 16 15 H 0.06 0.87 7.56 -51.93 -0.39 0.47 16 16 C -0.10 -1.46 5.36 -26.73 -0.14 -1.61 16 17 C 0.08 1.15 6.36 37.16 0.24 1.38 16 18 O -0.58 -8.31 13.66 -35.23 -0.48 -8.79 16 19 C -0.11 -1.50 4.29 -104.55 -0.45 -1.95 16 20 C -0.08 -0.90 7.67 -39.59 -0.30 -1.20 16 21 C -0.13 -1.28 10.04 -39.58 -0.40 -1.68 16 22 C -0.10 -0.89 10.04 -39.59 -0.40 -1.29 16 23 C -0.16 -1.65 10.03 -39.51 -0.40 -2.04 16 24 C 0.10 1.27 7.24 -39.42 -0.29 0.99 16 25 F -0.14 -1.93 16.57 2.25 0.04 -1.89 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.34 7.93 9.04 45.56 0.41 8.34 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.28 7.17 -51.93 -0.37 0.91 16 30 H 0.34 5.50 7.50 -39.29 -0.29 5.20 16 31 H 0.08 1.24 7.26 -51.93 -0.38 0.86 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.45 6.80 -51.93 -0.35 0.10 16 34 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 35 H 0.37 3.63 9.12 45.56 0.42 4.04 16 36 H 0.15 1.80 7.02 -52.49 -0.37 1.43 16 37 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -31.12 330.02 -7.28 -38.40 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -3.79 Total: 14.65 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.80 Total: -13.06 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.24 Total: -36.01 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.93 Total: -23.17 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.12 -7.28 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930822681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.437 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds