Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47279 * 2 1 4 4 C 1.53005 * 109.47359 * 239.99822 * 2 1 3 5 5 N 1.46899 * 109.47243 * 119.99771 * 2 1 3 6 6 C 1.46897 * 111.00263 * 166.20225 * 5 2 1 7 7 C 1.50700 * 109.47561 * 69.79513 * 6 5 2 8 8 C 1.38419 * 122.54097 * 237.00574 * 7 6 5 9 9 C 1.33390 * 114.91875 * 179.75517 * 8 7 6 10 10 S 1.75882 * 109.59396 * 0.48236 * 9 8 7 11 11 C 1.33389 * 122.53794 * 57.28712 * 7 6 5 12 12 C 1.46904 * 111.00114 * 42.24498 * 5 2 1 13 13 C 1.53005 * 109.47154 * 270.76909 * 12 5 2 14 14 H 1.08996 * 109.47257 * 51.70699 * 13 12 5 15 15 O 1.42896 * 109.46602 * 291.70581 * 13 12 5 16 16 C 1.50702 * 109.46806 * 171.70693 * 13 12 5 17 17 H 1.07997 * 120.00367 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99651 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00071 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99925 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47169 * 179.97438 * 20 18 16 22 22 H 1.48489 * 109.47095 * 300.00070 * 20 18 16 23 23 H 1.48500 * 109.46996 * 59.99789 * 20 18 16 24 24 H 1.09004 * 109.47243 * 296.87324 * 1 2 3 25 25 H 1.09003 * 109.46984 * 56.86805 * 1 2 3 26 26 H 1.08995 * 109.47193 * 176.86692 * 1 2 3 27 27 H 1.08994 * 109.47184 * 189.69045 * 3 2 1 28 28 H 1.09006 * 109.46582 * 309.68644 * 3 2 1 29 29 H 1.09001 * 109.47191 * 69.68422 * 3 2 1 30 30 H 1.08996 * 109.46880 * 291.13731 * 4 2 1 31 31 H 1.09001 * 109.46761 * 51.13567 * 4 2 1 32 32 H 1.08995 * 109.46930 * 171.13488 * 4 2 1 33 33 H 1.09009 * 109.47166 * 189.79847 * 6 5 2 34 34 H 1.09000 * 109.46859 * 309.79534 * 6 5 2 35 35 H 1.07997 * 122.53873 * 359.97438 * 8 7 6 36 36 H 1.07998 * 125.20126 * 180.20337 * 9 8 7 37 37 H 1.08004 * 125.19959 * 0.03416 * 11 7 6 38 38 H 1.08992 * 109.47318 * 150.76549 * 12 5 2 39 39 H 1.09005 * 109.46523 * 30.76828 * 12 5 2 40 40 H 0.96698 * 114.00352 * 299.99733 * 15 13 12 41 41 H 0.97002 * 119.99868 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6924 1.1994 6 6 3.4508 -1.0019 1.0813 7 6 4.2484 0.2747 1.1522 8 6 5.1198 0.6649 0.1499 9 6 5.7433 1.8239 0.3670 10 16 5.2392 2.4835 1.9175 11 6 4.1723 1.1117 2.1880 12 6 1.2380 -1.9083 1.4614 13 6 0.0414 -1.5637 2.3506 14 1 -0.5052 -0.7269 1.9159 15 8 0.5044 -1.2047 3.6539 16 6 -0.8694 -2.7600 2.4528 17 1 -0.6197 -3.6746 1.9357 18 6 -2.0216 -2.6867 3.2065 19 7 -2.3255 -1.5730 3.8366 20 14 -3.1503 -4.1696 3.3339 21 1 -4.3116 -3.8351 4.1967 22 1 -3.6307 -4.5437 1.9796 23 1 -2.4054 -5.3091 3.9271 24 1 -0.3634 0.4645 0.9167 25 1 -0.3633 0.5617 -0.8606 26 1 -0.3633 -1.0261 -0.0562 27 1 3.1161 1.4474 -0.1730 28 1 1.5423 2.0038 -0.7909 29 1 1.8247 1.9041 0.9637 30 1 1.8118 -1.7844 -1.1736 31 1 1.5532 -0.3071 -2.1321 32 1 3.1184 -0.5862 -1.3319 33 1 3.7483 -1.6619 1.8962 34 1 3.6383 -1.4950 0.1275 35 1 5.2798 0.0772 -0.7419 36 1 6.4529 2.2844 -0.3044 37 1 3.5510 0.9685 3.0598 38 1 1.8661 -2.6424 1.9660 39 1 0.8822 -2.3219 0.5177 40 1 1.0006 -1.9037 4.1015 41 1 -1.7388 -0.8033 3.7714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930923882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = -3.624232 kcal Electronic energy + Delta-G solvation = -21570.460481 eV Core-core repulsion = 18577.670322 eV Total energy + Delta-G solvation = -2992.790159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81488 -37.36650 -35.46716 -32.35924 -31.95817 -30.22223 -28.55137 -27.01992 -26.31181 -25.65759 -23.63864 -22.39920 -20.97343 -18.86679 -18.11721 -17.44338 -17.10764 -16.10500 -15.13221 -14.95401 -14.65062 -13.81461 -13.70398 -13.52222 -13.37455 -13.07769 -12.80187 -12.58545 -12.44369 -12.13627 -11.95494 -11.91527 -11.54969 -11.42451 -11.17737 -10.98503 -10.80517 -10.67460 -10.60886 -10.48055 -10.16085 -10.05852 -9.89000 -9.11182 -8.65190 -8.38436 -8.21086 -7.99848 -7.53664 -6.29347 -4.12186 1.14814 1.77465 2.10651 2.79630 3.43519 3.44500 3.63872 4.32733 4.57452 4.99331 5.15141 5.24108 5.25815 5.41219 5.45237 5.51060 5.56266 5.76391 5.79676 5.83104 5.88160 5.99038 6.04579 6.07602 6.16280 6.18520 6.23061 6.33188 6.44733 6.47461 6.52564 6.64392 6.74955 6.76861 6.87684 7.53148 7.63964 7.79775 8.11766 8.42297 8.92368 9.30127 9.73986 11.10667 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.004644 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.027586 B = 6027.696196 C = 6382.473646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.109 3.891 3 C -0.141 4.141 4 C -0.177 4.177 5 N -0.512 5.512 6 C 0.106 3.894 7 C -0.091 4.091 8 C -0.125 4.125 9 C -0.222 4.222 10 S 0.069 5.931 11 C -0.173 4.173 12 C 0.036 3.964 13 C 0.210 3.790 14 H 0.071 0.929 15 O -0.574 6.574 16 C -0.652 4.652 17 H 0.044 0.956 18 C 0.036 3.964 19 N -0.893 5.893 20 Si 1.063 2.937 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.289 1.289 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.133 0.867 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.345 0.655 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.470 5.139 -8.413 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 C -0.198 4.198 4 C -0.235 4.235 5 N -0.236 5.236 6 C -0.024 4.024 7 C -0.103 4.103 8 C -0.157 4.157 9 C -0.358 4.358 10 S 0.332 5.668 11 C -0.309 4.309 12 C -0.091 4.091 13 C 0.153 3.847 14 H 0.088 0.912 15 O -0.377 6.377 16 C -0.690 4.690 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.528 5.528 20 Si 0.892 3.108 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.216 1.216 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.187 0.813 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.189 0.811 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.061 6.825 -6.666 16.175 hybrid contribution 1.499 -1.953 -2.237 3.326 sum 14.560 4.872 -8.903 17.748 Atomic orbital electron populations 1.22266 0.93707 1.03005 1.01731 1.20988 0.95198 0.94219 0.87656 1.22157 1.01256 0.94917 1.01519 1.22483 1.01015 1.00901 0.99137 1.62386 1.00558 1.25310 1.35351 1.20869 0.88551 0.92364 1.00662 1.18803 0.98868 0.98765 0.93886 1.20065 0.98320 0.96967 1.00331 1.25438 1.07980 1.00965 1.01375 1.84227 1.40738 1.25787 1.16083 1.25496 1.03883 0.97056 1.04418 1.23028 0.96953 0.89375 0.99785 1.20013 0.88393 0.96423 0.79870 0.91205 1.86505 1.75284 1.43426 1.32480 1.22491 1.10157 0.99797 1.36590 0.93766 1.25688 0.96869 1.01984 0.92735 1.70623 1.40296 1.03277 1.38576 0.83655 0.76214 0.74703 0.76258 1.20789 1.21590 1.21556 0.90804 0.93426 0.91273 0.91714 0.93698 0.91991 0.92738 0.92581 0.92583 0.90370 0.93860 0.84879 0.82417 0.81297 0.92791 0.94190 0.81081 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 6.80 37.15 0.25 -2.42 16 2 C 0.11 1.73 0.69 -131.60 -0.09 1.64 16 3 C -0.14 -2.09 7.27 37.16 0.27 -1.82 16 4 C -0.18 -2.45 7.26 37.16 0.27 -2.18 16 5 N -0.51 -8.76 4.13 -220.39 -0.91 -9.67 16 6 C 0.11 1.55 4.78 -4.98 -0.02 1.52 16 7 C -0.09 -1.22 3.03 -106.25 -0.32 -1.54 16 8 C -0.13 -1.45 7.78 -41.21 -0.32 -1.77 16 9 C -0.22 -2.38 11.19 29.04 0.32 -2.05 16 10 S 0.07 0.80 23.34 -107.50 -2.51 -1.71 16 11 C -0.17 -2.37 9.81 29.04 0.28 -2.09 16 12 C 0.04 0.71 4.04 -3.82 -0.02 0.70 16 13 C 0.21 5.13 2.02 -27.88 -0.06 5.07 16 14 H 0.07 1.83 4.24 -51.93 -0.22 1.61 16 15 O -0.57 -14.41 12.00 -35.23 -0.42 -14.83 16 16 C -0.65 -17.81 8.75 -34.44 -0.30 -18.11 16 17 H 0.04 1.20 7.74 -52.49 -0.41 0.79 16 18 C 0.04 1.02 5.40 -17.82 -0.10 0.93 16 19 N -0.89 -27.13 13.53 55.43 0.75 -26.38 16 20 Si 1.06 24.93 29.90 -169.99 -5.08 19.85 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.07 1.50 6.27 -51.93 -0.33 1.18 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.36 5.91 -51.93 -0.31 1.05 16 27 H 0.06 0.90 4.04 -51.93 -0.21 0.69 16 28 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 30 H 0.05 0.80 6.85 -51.93 -0.36 0.44 16 31 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.06 0.71 5.93 -51.93 -0.31 0.40 16 33 H 0.08 1.16 7.68 -51.92 -0.40 0.76 16 34 H 0.04 0.59 5.66 -51.93 -0.29 0.30 16 35 H 0.13 1.35 7.86 -52.49 -0.41 0.93 16 36 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.17 2.54 8.06 -52.48 -0.42 2.11 16 38 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 39 H 0.04 0.81 5.49 -51.93 -0.29 0.52 16 40 H 0.35 7.91 9.04 45.56 0.41 8.32 16 41 H 0.29 8.84 6.47 -40.82 -0.26 8.57 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -29.62 322.03 -8.23 -37.85 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.08 Total: 12.18 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 0.18 Total: -22.13 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.16 Total: -36.05 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.42 Total: -14.83 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.85 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.62 -8.23 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.223 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds