Wall clock time and date at job start Tue Mar 31 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47145 * 2 1 4 4 C 1.53004 * 109.47240 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46928 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99217 * 269.99462 * 5 4 3 7 7 H 1.07994 * 120.00308 * 323.21254 * 6 5 4 8 8 C 1.38814 * 119.99294 * 143.21957 * 6 5 4 9 9 N 1.31618 * 119.99514 * 156.79009 * 8 6 5 10 10 Si 1.86797 * 120.00289 * 336.78245 * 8 6 5 11 11 H 1.48497 * 109.47175 * 95.40853 * 10 8 6 12 12 H 1.48506 * 109.47047 * 215.40613 * 10 8 6 13 13 H 1.48499 * 109.47184 * 335.40625 * 10 8 6 14 14 C 1.46497 * 120.00391 * 89.99665 * 5 4 3 15 15 C 1.50706 * 109.47038 * 89.03393 * 14 5 4 16 16 C 1.33387 * 125.20322 * 85.51825 * 15 14 5 17 17 C 1.38418 * 114.92003 * 179.79370 * 16 15 14 18 18 C 1.33386 * 114.92019 * 0.42941 * 17 16 15 19 19 C 1.50703 * 125.20393 * 179.86349 * 18 17 16 20 20 O 1.42899 * 109.47216 * 89.71357 * 19 18 17 21 21 C 1.42901 * 113.99912 * 179.97438 * 20 19 18 22 22 S 1.75881 * 125.20091 * 265.54219 * 15 14 5 23 23 H 1.08998 * 109.47221 * 299.99908 * 1 2 3 24 24 H 1.09001 * 109.47200 * 60.00039 * 1 2 3 25 25 H 1.09004 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47221 * 240.00092 * 2 1 3 27 27 H 1.09001 * 109.47200 * 119.99961 * 2 1 3 28 28 H 1.09005 * 109.47301 * 60.00075 * 3 2 1 29 29 H 1.09001 * 109.47040 * 300.00059 * 3 2 1 30 30 H 1.08991 * 109.47090 * 59.99637 * 4 3 2 31 31 H 1.09003 * 109.47035 * 299.99323 * 4 3 2 32 32 H 0.97010 * 120.00240 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.46856 * 329.03404 * 14 5 4 34 34 H 1.09003 * 109.46851 * 209.03337 * 14 5 4 35 35 H 1.07997 * 122.53744 * 0.02562 * 16 15 14 36 36 H 1.07998 * 122.54249 * 180.27277 * 17 16 15 37 37 H 1.09000 * 109.46897 * 329.71663 * 19 18 17 38 38 H 1.08997 * 109.47534 * 209.72050 * 19 18 17 39 39 H 1.09000 * 109.46936 * 60.00419 * 21 20 19 40 40 H 1.08999 * 109.47166 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.47853 * 300.00837 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2860 3.4698 -1.1858 7 1 4.6876 2.9266 -2.0283 8 6 4.0009 4.8232 -1.3046 9 7 4.6080 5.5455 -2.2222 10 14 2.7554 5.6191 -0.1624 11 1 3.4629 6.2401 0.9860 12 1 2.0014 6.6628 -0.9023 13 1 1.8115 4.5871 0.3371 14 6 4.3029 3.5137 1.2689 15 6 5.7193 3.2572 1.7153 16 6 6.7859 3.9600 1.3308 17 6 7.9873 3.5420 1.8764 18 6 7.8977 2.4943 2.6970 19 6 9.0568 1.8494 3.4125 20 8 9.2465 2.4828 4.6793 21 6 10.3270 1.9429 5.4430 22 16 6.2189 1.9851 2.8224 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9329 0.9288 -0.8908 31 1 3.9337 0.9286 0.8892 32 1 4.4085 6.4912 -2.3055 33 1 3.6109 3.1413 2.0242 34 1 4.1525 4.5850 1.1349 35 1 6.7167 4.7943 0.6485 36 1 8.9266 4.0259 1.6526 37 1 9.9603 1.9589 2.8127 38 1 8.8470 0.7905 3.5634 39 1 11.2570 2.0540 4.8855 40 1 10.4048 2.4768 6.3901 41 1 10.1432 0.8861 5.6361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139828748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:21 Heat of formation + Delta-G solvation = -1.978047 kcal Electronic energy + Delta-G solvation = -20111.197454 eV Core-core repulsion = 17118.478679 eV Total energy + Delta-G solvation = -2992.718775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.23534 -37.35489 -36.21628 -34.14822 -31.79415 -30.93314 -28.73288 -27.39892 -26.11506 -24.29265 -23.70055 -22.21757 -21.09921 -20.11907 -18.48579 -17.24308 -16.46274 -16.33417 -15.66514 -15.26627 -15.02224 -14.74829 -14.37274 -14.07404 -13.57939 -13.05259 -12.86350 -12.61671 -12.44521 -12.21503 -12.17594 -11.87505 -11.84802 -11.41919 -11.31900 -11.06614 -10.87927 -10.72193 -10.57074 -10.41401 -10.34451 -9.89536 -9.87608 -9.74745 -9.58910 -8.58708 -8.00670 -7.87757 -6.95831 -6.06525 -3.44852 1.46237 2.13333 2.56112 3.24489 3.31130 3.44495 3.47876 3.99278 4.46216 4.97446 4.98613 5.11804 5.19622 5.25562 5.27424 5.34608 5.40023 5.49153 5.50664 5.54202 5.63407 5.88133 5.95363 6.10385 6.11499 6.23641 6.26175 6.27801 6.29915 6.41735 6.49236 6.59165 6.74982 6.87900 7.03249 7.05546 7.07356 7.16909 7.96736 8.32801 8.89354 9.63367 10.03151 11.08516 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.005268 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.603893 B = 5313.642024 C = 6613.843585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.150 3.850 5 N -0.591 5.591 6 C -0.264 4.264 7 H 0.080 0.920 8 C 0.041 3.959 9 N -0.892 5.892 10 Si 0.864 3.136 11 H -0.283 1.283 12 H -0.299 1.299 13 H -0.264 1.264 14 C 0.195 3.805 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.095 4.095 18 C -0.216 4.216 19 C 0.143 3.857 20 O -0.385 6.385 21 C 0.031 3.969 22 S 0.070 5.930 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.085 0.915 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 -8.881 11.143 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.025 3.975 5 N -0.311 5.311 6 C -0.392 4.392 7 H 0.097 0.903 8 C -0.161 4.161 9 N -0.532 5.532 10 Si 0.694 3.306 11 H -0.211 1.211 12 H -0.227 1.227 13 H -0.188 1.188 14 C 0.067 3.933 15 C -0.262 4.262 16 C -0.172 4.172 17 C -0.127 4.127 18 C -0.334 4.334 19 C 0.065 3.935 20 O -0.305 6.305 21 C -0.066 4.066 22 S 0.333 5.667 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.278 -9.720 11.859 15.680 hybrid contribution 0.349 1.527 -0.339 1.603 sum 3.627 -8.193 11.520 14.594 Atomic orbital electron populations 1.21766 0.96668 1.00651 1.01644 1.21495 0.95175 0.98053 1.01294 1.22207 0.98879 0.94839 1.02019 1.20945 0.91319 0.85971 0.99296 1.44183 1.73803 1.11706 1.01411 1.18771 1.37604 0.92855 0.90016 0.90262 1.25413 0.97608 0.96671 0.96372 1.69887 1.40467 1.06892 1.35998 0.87118 0.83956 0.79165 0.80364 1.21148 1.22678 1.18830 1.19959 0.87052 0.98111 0.88173 1.25995 1.02647 0.97827 0.99705 1.20101 0.90872 1.03459 1.02788 1.20098 0.99269 0.95775 0.97525 1.23763 0.97113 1.04757 1.07718 1.20658 0.94273 0.94678 0.83916 1.88020 1.52031 1.60203 1.30197 1.22729 0.89445 0.98429 0.96009 1.83867 1.00185 1.35980 1.46684 0.93174 0.92861 0.93473 0.92303 0.92710 0.93198 0.91570 0.92883 0.94341 0.92597 0.93112 0.90712 0.83924 0.85115 0.91891 0.92709 0.94122 0.89691 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.74 5.93 -26.74 -0.16 -1.90 16 3 C -0.14 -2.49 5.54 -26.73 -0.15 -2.64 16 4 C 0.15 2.94 5.67 -4.04 -0.02 2.92 16 5 N -0.59 -13.63 2.07 -174.60 -0.36 -13.99 16 6 C -0.26 -7.10 9.91 -15.06 -0.15 -7.25 16 7 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.04 1.13 5.29 -17.43 -0.09 1.03 16 9 N -0.89 -26.31 13.97 55.49 0.78 -25.53 16 10 Si 0.86 21.39 25.07 -169.99 -4.26 17.13 16 11 H -0.28 -6.87 6.66 56.52 0.38 -6.50 16 12 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 13 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.20 4.25 4.97 -5.19 -0.03 4.23 16 15 C -0.14 -2.88 6.09 -36.00 -0.22 -3.10 16 16 C -0.14 -2.92 10.05 -41.21 -0.41 -3.34 16 17 C -0.09 -1.67 10.05 -41.21 -0.41 -2.09 16 18 C -0.22 -3.61 6.14 -36.00 -0.22 -3.83 16 19 C 0.14 1.91 6.43 36.01 0.23 2.15 16 20 O -0.39 -5.37 10.69 -35.23 -0.38 -5.75 16 21 C 0.03 0.29 11.01 101.05 1.11 1.40 16 22 S 0.07 1.21 23.31 -107.50 -2.51 -1.30 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.08 1.77 3.28 -51.93 -0.17 1.60 16 35 H 0.14 3.15 8.06 -52.49 -0.42 2.73 16 36 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -29.54 350.64 -8.53 -38.07 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.93 Total: 0.05 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.15 Total: -13.95 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.41 Total: -39.53 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.26 Total: 17.13 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.54 -8.53 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139828748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.088 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds