Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46778 * 2 1 4 4 C 1.53004 * 109.46895 * 184.76752 * 3 2 1 5 5 N 1.46905 * 109.47096 * 183.93346 * 4 3 2 6 6 C 1.46895 * 111.00066 * 199.71440 * 5 4 3 7 7 C 1.50705 * 109.47051 * 66.04694 * 6 5 4 8 8 H 1.07991 * 119.99747 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00019 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99964 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00024 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47066 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47332 * 120.00008 * 11 9 7 14 14 H 1.48497 * 109.47139 * 239.99917 * 11 9 7 15 15 C 1.46904 * 110.99786 * 75.76241 * 5 4 3 16 16 C 1.50693 * 109.47271 * 199.97873 * 15 5 4 17 17 S 1.75873 * 125.19952 * 265.89881 * 16 15 5 18 18 C 1.75867 * 91.02193 * 180.02562 * 17 16 15 19 19 C 1.33435 * 109.65591 * 359.73190 * 18 17 16 20 20 C 1.33638 * 125.19582 * 85.91728 * 16 15 5 21 21 O 1.36229 * 122.58257 * 359.97438 * 20 16 15 22 22 C 1.42895 * 117.00010 * 185.46061 * 21 20 16 23 23 H 1.08999 * 109.47506 * 304.87861 * 1 2 3 24 24 H 1.08998 * 109.47344 * 64.87823 * 1 2 3 25 25 H 1.09000 * 109.47326 * 184.87347 * 1 2 3 26 26 H 1.09004 * 109.47039 * 239.99811 * 2 1 3 27 27 H 1.09003 * 109.47352 * 119.99915 * 2 1 3 28 28 H 1.09001 * 109.47734 * 64.76904 * 3 2 1 29 29 H 1.08998 * 109.47151 * 304.76299 * 3 2 1 30 30 H 1.08998 * 109.47073 * 63.93782 * 4 3 2 31 31 H 1.08997 * 109.47200 * 303.93612 * 4 3 2 32 32 H 1.09000 * 109.47702 * 186.05032 * 6 5 4 33 33 H 1.09010 * 109.47262 * 306.05041 * 6 5 4 34 34 H 0.97006 * 119.99751 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47011 * 79.97977 * 15 5 4 36 36 H 1.09000 * 109.47184 * 319.98455 * 15 5 4 37 37 H 1.08003 * 125.16912 * 179.97438 * 18 17 16 38 38 H 1.07999 * 122.55376 * 180.26206 * 19 18 17 39 39 H 1.09002 * 109.46876 * 55.38236 * 22 21 20 40 40 H 1.08997 * 109.47485 * 175.38196 * 22 21 20 41 41 H 1.09000 * 109.47414 * 295.38945 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5652 1.4442 -0.1199 5 7 4.0623 2.8233 -0.0253 6 6 5.4150 2.9351 -0.5871 7 6 5.3661 2.6725 -2.0703 8 1 4.4244 2.4458 -2.5478 9 6 6.5236 2.7229 -2.8178 10 7 7.6704 2.9995 -2.2364 11 14 6.4629 2.3981 -4.6564 12 1 5.0633 2.1132 -5.0628 13 1 6.9563 3.5933 -5.3867 14 1 7.3208 1.2304 -4.9814 15 6 4.0279 3.3012 1.3634 16 6 4.0616 4.8077 1.3773 17 16 5.5132 5.7879 1.5359 18 6 4.5632 7.2653 1.4474 19 6 3.2720 6.9608 1.3045 20 6 2.9928 5.6030 1.2712 21 8 1.7274 5.1172 1.1354 22 6 0.6870 6.0707 0.9116 23 1 -0.3634 0.5876 0.8430 24 1 -0.3634 0.4363 -0.9304 25 1 -0.3634 -1.0239 0.0873 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7480 1.9312 0.9296 29 1 1.6085 1.9803 -0.8442 30 1 3.8546 1.0189 -1.0808 31 1 3.9936 0.8475 0.6854 32 1 5.8010 3.9386 -0.4083 33 1 6.0681 2.2042 -0.1101 34 1 8.4846 3.0352 -2.7624 35 1 4.8923 2.9135 1.9025 36 1 3.1138 2.9537 1.8447 37 1 4.9645 8.2668 1.4969 38 1 2.5026 7.7144 1.2243 39 1 0.9307 6.6762 0.0386 40 1 -0.2541 5.5482 0.7401 41 1 0.5907 6.7153 1.7853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141324769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = -11.224305 kcal Electronic energy + Delta-G solvation = -20671.770657 eV Core-core repulsion = 17678.650934 eV Total energy + Delta-G solvation = -2993.119723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.42108 -37.11967 -35.40303 -34.19624 -32.49146 -30.41987 -28.50626 -27.37027 -26.08770 -24.52269 -22.85672 -22.61795 -20.66221 -19.96174 -19.07595 -17.11533 -16.35927 -16.19418 -15.44405 -15.08919 -14.70703 -14.61851 -14.24376 -13.84139 -13.49459 -13.32365 -13.03709 -12.52819 -12.35328 -12.14294 -12.02782 -11.79639 -11.62811 -11.25520 -10.98257 -10.80293 -10.69799 -10.67133 -10.62712 -10.58670 -10.31467 -10.19786 -9.89578 -9.62542 -9.09961 -8.38688 -8.17884 -7.48454 -7.11392 -5.96004 -3.95872 1.38616 2.03623 2.34075 3.10402 3.34156 3.41499 3.46820 3.98101 4.48506 4.97916 5.06368 5.28717 5.31909 5.33205 5.36776 5.39478 5.49094 5.51813 5.61152 5.80278 5.83084 5.95426 6.07144 6.09132 6.14189 6.18812 6.26043 6.27167 6.31353 6.47496 6.57192 6.81061 6.88345 6.97556 7.41316 7.43094 7.70255 7.89185 8.19686 8.32831 8.64411 9.11990 9.67278 11.14861 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.007348 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.720861 B = 3809.882965 C = 5709.601072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.111 4.111 4 C 0.063 3.937 5 N -0.528 5.528 6 C 0.188 3.812 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.134 3.866 16 C -0.194 4.194 17 S 0.149 5.851 18 C -0.210 4.210 19 C -0.189 4.189 20 C 0.099 3.901 21 O -0.298 6.298 22 C 0.033 3.967 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.016 0.984 32 H 0.038 0.962 33 H -0.013 1.013 34 H 0.259 0.741 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 4.260 8.960 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.065 4.065 5 N -0.252 5.252 6 C 0.063 3.937 7 C -0.540 4.540 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.212 1.212 15 C 0.004 3.996 16 C -0.312 4.312 17 S 0.412 5.588 18 C -0.346 4.346 19 C -0.222 4.222 20 C 0.044 3.956 21 O -0.212 6.212 22 C -0.063 4.063 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.005 0.995 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.179 0.821 38 H 0.154 0.846 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.988 4.063 8.806 13.921 hybrid contribution -0.856 0.147 -0.857 1.221 sum -10.844 4.210 7.948 14.089 Atomic orbital electron populations 1.21745 0.96457 1.00740 1.01608 1.21514 0.95237 0.97917 1.01588 1.21589 0.96239 0.94975 1.02052 1.22010 0.93585 0.89497 1.01393 1.62050 1.28237 1.20418 1.14510 1.19848 0.82225 0.96918 0.94738 1.21195 0.93690 1.46551 0.92553 0.91880 1.24965 0.95447 0.95684 0.98489 1.69977 0.98412 1.49746 1.35630 0.86509 0.78038 0.77704 0.85593 1.19698 1.21105 1.21177 1.20276 1.00127 0.87150 0.92011 1.23520 0.93406 0.99864 1.14413 1.84471 1.08335 0.94838 1.71138 1.25369 0.97111 1.02575 1.09583 1.20096 0.97405 0.95431 1.09268 1.17463 0.85205 0.90599 1.02373 1.86183 1.12796 1.34180 1.88006 1.22913 0.89987 0.93355 1.00021 0.93040 0.92907 0.93443 0.92109 0.92691 0.92562 0.91648 0.89648 0.96576 0.94376 0.99513 0.93116 0.95127 0.90229 0.82068 0.84567 0.93153 0.88928 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.89 16 3 C -0.11 -1.84 5.36 -26.73 -0.14 -1.99 16 4 C 0.06 1.27 4.79 -3.82 -0.02 1.25 16 5 N -0.53 -11.84 4.34 -237.51 -1.03 -12.87 16 6 C 0.19 4.99 4.54 -4.98 -0.02 4.97 16 7 C -0.50 -14.33 8.23 -34.44 -0.28 -14.62 16 8 H 0.06 1.80 7.31 -52.49 -0.38 1.42 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 11 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.13 2.64 5.12 -4.98 -0.03 2.61 16 16 C -0.19 -3.68 5.50 -35.92 -0.20 -3.88 16 17 S 0.15 2.59 22.19 -107.50 -2.39 0.21 16 18 C -0.21 -3.07 11.22 29.05 0.33 -2.75 16 19 C -0.19 -2.82 9.16 -41.11 -0.38 -3.20 16 20 C 0.10 1.73 6.59 -41.04 -0.27 1.46 16 21 O -0.30 -4.91 10.23 -20.47 -0.21 -5.12 16 22 C 0.03 0.39 9.93 101.05 1.00 1.39 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.92 6.68 -51.93 -0.35 0.58 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.89 6.58 -51.93 -0.34 1.55 16 31 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 32 H 0.04 1.07 6.40 -51.93 -0.33 0.73 16 33 H -0.01 -0.37 8.12 -51.92 -0.42 -0.79 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.03 0.61 7.99 -51.93 -0.42 0.19 16 36 H 0.08 1.45 6.36 -51.93 -0.33 1.12 16 37 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.14 1.63 6.93 -52.49 -0.36 1.27 16 39 H 0.05 0.57 7.80 -51.93 -0.40 0.16 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.43 7.90 -51.93 -0.41 0.02 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -31.41 346.10 -9.27 -40.68 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.68 Total: -2.38 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 0.10 Total: -16.53 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.30 Total: -39.08 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.21 Total: -5.12 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.39 Total: 0.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.41 -9.27 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141324769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.456 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds