Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36124 * 120.17210 * 2 1 4 4 C 1.39329 * 120.98736 * 179.97438 * 3 2 1 5 5 C 1.36128 * 120.99368 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.17572 * 179.97438 * 5 4 3 7 7 N 1.46491 * 109.47069 * 260.00026 * 6 5 4 8 8 C 1.34783 * 120.00141 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99895 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99852 * 179.97438 * 8 7 6 11 11 C 1.50704 * 109.46856 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00153 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99989 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99918 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99949 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47287 * 90.00018 * 15 13 11 17 17 H 1.48502 * 109.47109 * 210.00006 * 15 13 11 18 18 H 1.48507 * 109.46975 * 329.99761 * 15 13 11 19 19 C 1.40504 * 119.64980 * 359.97438 * 5 4 3 20 20 C 1.40550 * 121.28889 * 179.97438 * 19 5 4 21 21 C 1.36084 * 119.65263 * 180.02562 * 20 19 5 22 22 C 1.39387 * 120.99356 * 0.02562 * 21 20 19 23 23 C 1.36085 * 120.99233 * 359.96564 * 22 21 20 24 24 C 1.40501 * 120.17362 * 179.71724 * 2 1 3 25 25 H 1.09002 * 109.47152 * 90.00200 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00300 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00281 * 1 2 3 28 28 H 1.08005 * 119.50772 * 359.97438 * 3 2 1 29 29 H 1.08008 * 119.50319 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47073 * 20.00308 * 6 5 4 31 31 H 1.09000 * 109.47304 * 139.99419 * 6 5 4 32 32 H 0.96996 * 120.00583 * 359.97438 * 7 6 5 33 33 H 1.09000 * 109.47202 * 299.99537 * 10 8 7 34 34 H 1.08996 * 109.47604 * 60.00264 * 10 8 7 35 35 H 0.97004 * 119.99942 * 180.02562 * 14 13 11 36 36 H 1.08002 * 120.17079 * 0.04150 * 20 19 5 37 37 H 1.08000 * 119.50173 * 180.02562 * 21 20 19 38 38 H 1.07993 * 119.50029 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.17556 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1768 0.0000 4 6 3.5843 1.1966 0.0005 5 6 4.3018 0.0398 0.0005 6 6 5.8082 0.0828 0.0005 7 7 6.3031 -0.1431 -1.3596 8 6 7.6290 -0.1486 -1.6021 9 8 8.4122 0.0339 -0.6943 10 6 8.1380 -0.3815 -3.0013 11 6 9.6445 -0.3384 -3.0013 12 1 10.1797 -0.1606 -2.0802 13 6 10.3395 -0.5270 -4.1770 14 7 9.6878 -0.7440 -5.2985 15 14 12.2067 -0.4743 -4.1770 16 1 12.7404 -1.8384 -3.9329 17 1 12.6881 0.0174 -5.4929 18 1 12.6761 0.4400 -3.1050 19 6 3.6305 -1.1945 0.0006 20 6 4.3369 -2.4096 0.0000 21 6 3.6528 -3.5860 -0.0005 22 6 2.2591 -3.6058 -0.0010 23 6 1.5418 -2.4494 -0.0003 24 6 2.2132 -1.2146 0.0060 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6459 2.1091 -0.0004 29 1 4.1028 2.1441 0.0009 30 1 6.1439 1.0584 0.3521 31 1 6.1938 -0.6937 0.6612 32 1 5.6768 -0.2894 -2.0856 33 1 7.8021 -1.3571 -3.3524 34 1 7.7528 0.3950 -3.6621 35 1 10.1768 -0.8771 -6.1257 36 1 5.4169 -2.4096 0.0003 37 1 4.1981 -4.5183 -0.0004 38 1 1.7407 -4.5532 -0.0018 39 1 0.4622 -2.4801 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = -9.940992 kcal Electronic energy + Delta-G solvation = -20933.250609 eV Core-core repulsion = 17804.742583 eV Total energy + Delta-G solvation = -3128.508026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75809 -38.57870 -36.77057 -35.29615 -32.90007 -32.82908 -30.43783 -30.16259 -29.32574 -27.84070 -24.81671 -23.40221 -23.16864 -22.98093 -20.17307 -19.62063 -17.58642 -17.14165 -16.40234 -16.31928 -15.47687 -15.13284 -14.84085 -14.50510 -14.31152 -14.19119 -14.00641 -13.58389 -13.35771 -12.90735 -12.73661 -12.54029 -12.27879 -12.20927 -12.07367 -11.91838 -11.29132 -11.14205 -10.96122 -10.78333 -10.69382 -10.57929 -9.93804 -9.85160 -9.24821 -8.70294 -8.68374 -8.48221 -8.38228 -7.85069 -6.03586 -4.03047 0.39622 0.93482 1.90769 2.87306 3.36363 3.41484 3.48761 3.73866 3.85848 4.22332 4.41935 4.52513 4.61597 4.70608 4.78614 4.84576 4.97029 5.11948 5.27680 5.31926 5.34636 5.37687 5.40311 5.48494 5.59906 5.75124 5.87047 5.93898 6.06217 6.14557 6.16465 6.34890 6.39942 6.47299 6.61089 6.74610 6.92186 7.03863 7.21930 7.35708 7.98050 8.08255 8.46199 9.07908 9.24772 9.61943 11.08817 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.003456 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.962620 B = 8099.047241 C = 8531.152658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.119 4.119 4 C -0.096 4.096 5 C -0.089 4.089 6 C 0.160 3.840 7 N -0.744 5.744 8 C 0.515 3.485 9 O -0.546 6.546 10 C 0.005 3.995 11 C -0.507 4.507 12 H 0.075 0.925 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.901 3.099 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.272 1.272 19 C -0.036 4.036 20 C -0.099 4.099 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.112 4.112 24 C -0.051 4.051 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.397 0.603 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.261 0.739 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.411 -1.382 10.309 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.090 4.090 6 C 0.036 3.964 7 N -0.399 5.399 8 C 0.305 3.695 9 O -0.422 6.422 10 C -0.034 4.034 11 C -0.546 4.546 12 H 0.093 0.907 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.729 3.271 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.036 4.036 20 C -0.117 4.117 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.051 4.051 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.769 -1.273 10.794 23.441 hybrid contribution 0.607 -0.077 -0.508 0.795 sum -20.162 -1.350 10.286 22.675 Atomic orbital electron populations 1.20823 0.91031 1.02852 1.02523 1.19736 0.95868 0.92355 0.99478 1.20701 0.94054 0.97602 1.01301 1.20805 0.93853 0.98040 0.98726 1.19833 0.95412 0.92491 1.01237 1.20033 0.87817 1.02130 0.86432 1.46397 1.08213 1.76401 1.08871 1.22042 0.80103 0.73763 0.93615 1.90535 1.55614 1.48659 1.47403 1.19239 0.98069 0.99145 0.86937 1.21173 0.90023 1.48296 0.95099 0.90684 1.25010 0.99007 0.95256 0.95374 1.69963 1.35651 1.49544 0.98925 0.86433 0.85069 0.78392 0.77217 1.20627 1.21290 1.19661 1.17938 0.92291 0.93362 1.00005 1.21220 1.00490 0.91519 0.98464 1.20902 0.94307 0.98342 1.00016 1.20864 0.94247 0.98226 1.00007 1.21011 0.99675 0.91595 1.00748 1.17912 0.92340 0.93403 1.01412 0.90917 0.91343 0.91326 0.85921 0.85614 0.91145 0.91171 0.76955 0.93471 0.93463 0.92931 0.85002 0.85891 0.86120 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.54 36.01 0.34 -0.48 16 2 C -0.07 -0.76 5.89 -104.53 -0.62 -1.38 16 3 C -0.12 -1.22 9.59 -39.94 -0.38 -1.60 16 4 C -0.10 -1.11 9.57 -39.93 -0.38 -1.49 16 5 C -0.09 -1.18 5.25 -104.53 -0.55 -1.73 16 6 C 0.16 2.44 5.06 -5.20 -0.03 2.41 16 7 N -0.74 -13.09 5.55 -61.48 -0.34 -13.43 16 8 C 0.51 11.80 7.82 -10.98 -0.09 11.71 16 9 O -0.55 -14.29 15.46 5.56 0.09 -14.21 16 10 C 0.01 0.14 5.46 -29.03 -0.16 -0.02 16 11 C -0.51 -14.88 8.92 -34.44 -0.31 -15.19 16 12 H 0.08 2.29 6.75 -52.49 -0.35 1.94 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 15 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.04 -0.47 5.74 -106.83 -0.61 -1.08 16 20 C -0.10 -1.28 9.29 -39.48 -0.37 -1.65 16 21 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16 22 C -0.12 -1.15 9.95 -39.93 -0.40 -1.54 16 23 C -0.11 -1.14 9.28 -39.48 -0.37 -1.50 16 24 C -0.05 -0.60 5.74 -106.83 -0.61 -1.21 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 28 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 29 H 0.13 1.31 8.00 -52.48 -0.42 0.89 16 30 H 0.07 1.09 7.98 -51.93 -0.41 0.67 16 31 H 0.07 1.11 6.99 -51.93 -0.36 0.74 16 32 H 0.40 6.32 8.46 -40.82 -0.35 5.97 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 1.80 6.61 -52.49 -0.35 1.46 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 0.95 6.37 -52.49 -0.33 0.62 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -33.25 330.25 -9.58 -42.83 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.00 Total: 3.47 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -5.02 Total: -15.00 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.40 Total: -39.37 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.09 Total: -14.21 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.25 -9.58 -42.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.889 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds