Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47322 * 2 1 4 4 C 1.53000 * 109.47157 * 60.00006 * 3 2 1 5 5 O 1.42908 * 109.46445 * 57.78358 * 4 3 2 6 6 C 1.53001 * 109.47049 * 300.00260 * 3 2 1 7 7 O 1.42894 * 109.47428 * 300.45749 * 6 3 2 8 8 N 1.46494 * 109.47203 * 180.02562 * 3 2 1 9 9 C 1.39681 * 119.99945 * 179.36666 * 8 3 2 10 10 C 1.39288 * 119.93995 * 0.62520 * 9 8 3 11 11 C 1.38694 * 120.40210 * 180.02562 * 10 9 8 12 12 F 1.35107 * 119.86630 * 180.02562 * 11 10 9 13 13 C 1.37924 * 120.27242 * 0.02562 * 11 10 9 14 14 C 1.40708 * 119.86683 * 359.97438 * 13 11 10 15 15 C 1.41414 * 120.19298 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99836 * 29.55603 * 15 14 13 17 17 C 1.39928 * 119.99921 * 209.55666 * 15 14 13 18 18 N 1.30832 * 119.99760 * 11.05349 * 17 15 14 19 19 Si 1.86797 * 119.99679 * 191.05442 * 17 15 14 20 20 H 1.48494 * 109.47412 * 90.00031 * 19 17 15 21 21 H 1.48504 * 109.46851 * 209.99982 * 19 17 15 22 22 H 1.48504 * 109.47615 * 329.99837 * 19 17 15 23 23 C 1.38299 * 119.93434 * 180.65223 * 9 8 3 24 24 H 1.08996 * 109.47792 * 59.99601 * 1 2 3 25 25 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 26 26 H 1.09013 * 109.46767 * 299.99910 * 1 2 3 27 27 H 1.09002 * 109.46735 * 240.00585 * 2 1 3 28 28 H 1.08992 * 109.47376 * 120.00151 * 2 1 3 29 29 H 1.08994 * 109.47295 * 177.78121 * 4 3 2 30 30 H 1.09003 * 109.47219 * 297.79012 * 4 3 2 31 31 H 0.96705 * 113.99435 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47106 * 60.45532 * 6 3 2 33 33 H 1.08996 * 109.47457 * 180.45573 * 6 3 2 34 34 H 0.96696 * 114.00693 * 179.97438 * 7 6 3 35 35 H 0.97002 * 120.00027 * 359.37409 * 8 3 2 36 36 H 1.08001 * 119.79605 * 0.02666 * 10 9 8 37 37 H 1.07997 * 120.06365 * 180.02562 * 13 11 10 38 38 H 0.96998 * 119.99232 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.13984 * 0.25280 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 8 1.9635 1.4606 2.4154 6 6 1.5300 2.1638 -1.2492 7 8 1.9974 1.4840 -2.4160 8 7 3.5050 1.4425 -0.0006 9 6 4.2034 2.6521 -0.0141 10 6 3.5058 3.8576 -0.0138 11 6 4.1895 5.0642 -0.0276 12 9 3.5019 6.2273 -0.0267 13 6 5.5686 5.0818 -0.0424 14 6 6.2848 3.8706 -0.0429 15 6 7.6988 3.8806 -0.0575 16 1 8.2377 4.7006 0.3938 17 6 8.3997 2.8280 -0.6565 18 7 7.7623 1.9501 -1.3877 19 14 10.2454 2.6765 -0.4121 20 1 10.5193 1.8466 0.7884 21 1 10.8518 2.0349 -1.6062 22 1 10.8326 4.0275 -0.2243 23 6 5.5863 2.6504 -0.0283 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.9255 3.1792 1.2694 30 1 0.4408 2.1983 1.2297 31 1 1.6760 1.8627 3.2466 32 1 0.4400 2.1709 -1.2451 33 1 1.9000 3.1890 -1.2534 34 1 1.7113 1.8869 -3.2471 35 1 3.9900 0.6025 0.0082 36 1 2.4258 3.8528 -0.0027 37 1 6.0976 6.0233 -0.0528 38 1 8.2482 1.2203 -1.8026 39 1 6.1274 1.7158 -0.0331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167972386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = -112.833969 kcal Electronic energy + Delta-G solvation = -23277.305402 eV Core-core repulsion = 19713.566377 eV Total energy + Delta-G solvation = -3563.739025 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.71824 -39.47553 -37.00396 -36.12264 -34.58014 -33.59604 -32.28321 -29.53880 -28.88752 -27.22522 -25.28430 -25.09778 -23.74953 -21.08995 -20.45008 -19.03356 -17.48683 -17.24794 -17.03320 -16.64237 -15.43939 -15.09094 -14.89091 -14.83923 -14.41783 -14.18986 -13.93941 -13.90067 -13.56558 -12.97382 -12.78317 -12.71359 -12.06472 -11.92521 -11.89374 -11.54600 -11.50553 -11.13559 -11.09424 -10.67349 -10.58018 -10.45309 -10.27504 -10.06951 -9.84379 -9.63686 -9.30006 -9.08787 -8.65316 -7.26481 -6.73702 -6.19708 -4.42986 2.77055 3.00882 3.09793 3.13198 3.24431 3.94774 3.96462 4.25390 4.64446 4.94633 5.04247 5.10385 5.36595 5.39389 5.47792 5.60078 5.63249 5.65921 5.69158 5.81535 5.84854 6.07485 6.08509 6.35637 6.36307 6.47789 6.66512 6.83570 7.06515 7.23246 7.36296 7.57854 7.72250 7.82403 7.90975 8.01019 8.10366 8.39937 8.67182 8.77177 8.92095 8.99469 10.24313 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.005560 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.447760 B = 5034.395603 C = 5683.418517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.199 3.801 4 C 0.050 3.950 5 O -0.557 6.557 6 C 0.050 3.950 7 O -0.555 6.555 8 N -0.728 5.728 9 C 0.253 3.747 10 C -0.349 4.349 11 C 0.137 3.863 12 F -0.170 7.170 13 C -0.288 4.288 14 C 0.161 3.839 15 C -0.460 4.460 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.791 5.791 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.233 4.233 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.373 0.627 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.373 0.627 35 H 0.395 0.605 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.279 0.721 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 -3.100 1.768 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.110 3.890 4 C -0.029 4.029 5 O -0.361 6.361 6 C -0.029 4.029 7 O -0.359 6.359 8 N -0.359 5.359 9 C 0.153 3.847 10 C -0.372 4.372 11 C 0.117 3.883 12 F -0.149 7.149 13 C -0.309 4.309 14 C 0.157 3.843 15 C -0.490 4.490 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.417 5.417 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.257 4.257 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.218 0.782 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.218 0.782 35 H 0.229 0.771 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.101 -3.997 1.608 11.908 hybrid contribution 0.297 0.589 -0.059 0.662 sum -10.804 -3.408 1.549 11.434 Atomic orbital electron populations 1.21817 0.95624 1.01570 1.01518 1.21520 0.95761 0.95312 1.02850 1.19926 0.82915 0.95453 0.90725 1.22953 0.96663 0.97078 0.86176 1.86477 1.79559 1.54644 1.15440 1.22943 0.96243 0.97449 0.86253 1.86487 1.78065 1.56017 1.15321 1.44211 1.02309 1.05723 1.83619 1.17238 0.91096 0.84178 0.92213 1.20087 0.97597 0.90584 1.28899 1.17266 0.89817 0.79654 1.01516 1.91319 1.80636 1.48466 1.94522 1.20874 0.90905 0.98729 1.20400 1.17080 0.92978 0.89366 0.84884 1.19547 0.91178 1.05466 1.32805 0.90331 1.25889 1.00978 0.94404 0.92954 1.69837 1.38106 1.11421 1.22297 0.86271 0.82058 0.79513 0.78598 1.19349 1.20343 1.18662 1.20774 0.89828 0.99352 1.15716 0.92670 0.92744 0.92691 0.90911 0.90936 0.90827 0.93961 0.78177 0.94026 0.90873 0.78163 0.77108 0.87111 0.88187 0.90999 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.21 37.16 0.34 -1.32 16 2 C -0.12 -1.64 4.79 -26.73 -0.13 -1.77 16 3 C 0.20 3.16 0.40 -131.82 -0.05 3.11 16 4 C 0.05 0.74 5.22 37.16 0.19 0.93 16 5 O -0.56 -8.20 12.80 -35.23 -0.45 -8.65 16 6 C 0.05 0.76 5.25 37.16 0.20 0.95 16 7 O -0.56 -8.71 12.84 -35.23 -0.45 -9.16 16 8 N -0.73 -14.26 5.03 -46.05 -0.23 -14.49 16 9 C 0.25 5.83 6.24 -83.87 -0.52 5.30 16 10 C -0.35 -7.76 6.77 -39.02 -0.26 -8.02 16 11 C 0.14 3.27 7.28 -39.53 -0.29 2.98 16 12 F -0.17 -3.81 17.26 2.25 0.04 -3.77 16 13 C -0.29 -7.35 9.76 -38.76 -0.38 -7.73 16 14 C 0.16 4.32 5.54 -106.86 -0.59 3.73 16 15 C -0.46 -12.26 9.06 -37.74 -0.34 -12.60 16 16 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 17 C 0.08 1.90 5.24 -17.34 -0.09 1.81 16 18 N -0.79 -20.51 10.91 55.55 0.61 -19.91 16 19 Si 0.91 18.80 29.57 -169.99 -5.03 13.77 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.23 -6.02 8.50 -38.66 -0.33 -6.35 16 24 H 0.05 0.59 6.44 -51.93 -0.33 0.26 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.58 6.48 -51.92 -0.34 0.25 16 27 H 0.07 1.09 7.67 -51.93 -0.40 0.69 16 28 H 0.07 1.06 7.62 -51.93 -0.40 0.67 16 29 H 0.07 1.22 4.69 -51.93 -0.24 0.98 16 30 H 0.04 0.51 6.55 -51.93 -0.34 0.17 16 31 H 0.37 3.81 9.12 45.56 0.42 4.23 16 32 H 0.04 0.51 6.45 -51.93 -0.34 0.18 16 33 H 0.07 1.25 4.65 -51.93 -0.24 1.01 16 34 H 0.37 4.22 9.12 45.56 0.42 4.64 16 35 H 0.39 7.77 8.48 -40.82 -0.35 7.42 16 36 H 0.11 2.18 3.33 -52.49 -0.17 2.00 16 37 H 0.10 2.46 8.06 -52.49 -0.42 2.03 16 38 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 39 H 0.12 3.28 6.28 -52.49 -0.33 2.95 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -30.14 312.22 -6.11 -36.25 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -3.04 Total: 20.22 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -2.26 Total: -18.97 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.37 Total: -34.40 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.90 Total: -17.81 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.14 -6.11 -36.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167972386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.586 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds