Wall clock time and date at job start Tue Mar 31 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35974 * 117.00085 * 2 1 4 4 C 1.38515 * 120.08771 * 0.23322 * 3 2 1 5 5 C 1.38272 * 120.02488 * 180.24969 * 4 3 2 6 6 C 1.38303 * 120.19457 * 359.78883 * 5 4 3 7 7 C 1.50705 * 119.91053 * 179.97438 * 6 5 4 8 8 C 1.38164 * 120.17526 * 359.95859 * 6 5 4 9 9 C 1.38818 * 119.97541 * 0.02562 * 8 6 5 10 10 N 1.39796 * 120.10022 * 179.97438 * 9 8 6 11 11 C 1.38741 * 119.99789 * 353.39500 * 10 9 8 12 12 C 1.39633 * 119.84548 * 320.46562 * 11 10 9 13 13 C 1.36298 * 120.15553 * 179.76593 * 12 11 10 14 14 C 1.40913 * 119.84177 * 0.51105 * 13 12 11 15 15 C 1.41093 * 120.15271 * 179.72738 * 14 13 12 16 16 H 1.07995 * 120.00560 * 161.61453 * 15 14 13 17 17 C 1.39839 * 119.99832 * 341.60369 * 15 14 13 18 18 N 1.30917 * 120.00270 * 328.53157 * 17 15 14 19 19 Si 1.86797 * 119.99848 * 148.52684 * 17 15 14 20 20 H 1.48502 * 109.47108 * 94.99226 * 19 17 15 21 21 H 1.48506 * 109.47244 * 214.99252 * 19 17 15 22 22 H 1.48506 * 109.47116 * 334.99116 * 19 17 15 23 23 C 1.40914 * 119.69587 * 359.73897 * 14 13 12 24 24 C 1.36300 * 119.83907 * 0.02562 * 23 14 13 25 25 H 1.09004 * 109.46941 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47247 * 299.99822 * 1 2 3 27 27 H 1.08996 * 109.46638 * 60.00317 * 1 2 3 28 28 H 1.07997 * 119.98945 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.90383 * 179.76984 * 5 4 3 30 30 H 1.08999 * 109.47463 * 269.98508 * 7 6 5 31 31 H 1.09009 * 109.46978 * 29.97995 * 7 6 5 32 32 H 1.09000 * 109.47065 * 149.97456 * 7 6 5 33 33 H 1.08003 * 120.01240 * 180.02562 * 8 6 5 34 34 H 0.96998 * 120.00104 * 173.66564 * 10 9 8 35 35 H 1.08000 * 119.92158 * 0.02562 * 12 11 10 36 36 H 1.07998 * 120.07984 * 180.27622 * 13 12 11 37 37 H 0.97001 * 120.00397 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.07613 * 179.97438 * 23 14 13 39 39 H 1.08000 * 119.91500 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2938 2.3744 0.0049 5 6 1.9229 3.6057 -0.0003 6 6 3.3038 3.6812 -0.0060 7 6 3.9828 5.0266 -0.0123 8 6 4.0625 2.5265 -0.0057 9 6 3.4384 1.2866 -0.0001 10 7 4.2035 0.1166 -0.0003 11 6 5.5815 0.1889 -0.1442 12 6 6.1398 1.1056 -1.0374 13 6 7.4929 1.1853 -1.1803 14 6 8.3285 0.3325 -0.4318 15 6 9.7298 0.4055 -0.5788 16 1 10.3749 -0.0134 0.1793 17 6 10.2835 1.0200 -1.7063 18 7 9.6520 0.9762 -2.8522 19 14 11.9242 1.9036 -1.5773 20 1 13.0160 0.9817 -1.9815 21 1 11.9201 3.0886 -2.4725 22 1 12.1409 2.3431 -0.1754 23 6 7.7580 -0.5938 0.4639 24 6 6.4035 -0.6594 0.6003 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 0.2152 2.3193 0.0091 29 1 1.3341 4.5111 -0.0003 30 1 4.1427 5.3482 -1.0414 31 1 3.3538 5.7535 0.5019 32 1 4.9429 4.9515 0.4983 33 1 5.1407 2.5886 -0.0097 34 1 3.7706 -0.7460 0.0963 35 1 5.4980 1.7558 -1.6134 36 1 7.9235 1.8978 -1.8682 37 1 10.0358 1.4028 -3.6343 38 1 8.3926 -1.2506 1.0403 39 1 5.9649 -1.3691 1.2861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173986157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:41 Heat of formation + Delta-G solvation = 8.897776 kcal Electronic energy + Delta-G solvation = -21304.881796 eV Core-core repulsion = 18177.190680 eV Total energy + Delta-G solvation = -3127.691115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.07458 -38.17350 -37.11297 -35.18135 -33.29846 -31.47159 -29.96881 -29.58458 -28.19145 -27.65373 -25.66898 -24.69489 -21.97691 -21.57627 -20.50430 -20.05071 -17.78676 -17.43706 -16.71296 -16.04716 -15.56469 -15.28329 -14.99501 -14.23728 -13.90110 -13.75881 -13.60974 -13.50484 -13.25751 -12.68903 -12.31833 -12.20574 -12.00575 -11.82018 -11.68332 -11.39588 -11.21881 -11.15641 -11.04445 -10.82023 -10.59427 -10.58640 -9.93334 -9.88018 -9.42353 -9.00833 -8.11493 -7.63766 -7.58554 -6.99088 -6.41086 -4.24787 1.75822 1.87594 2.74339 3.01216 3.04337 3.06802 3.21001 3.48759 3.87281 4.17345 4.19568 4.49031 5.02403 5.15329 5.18638 5.24757 5.43080 5.52524 5.60409 5.65062 5.81207 5.88329 6.05636 6.18012 6.20262 6.24926 6.30670 6.52761 6.65179 6.85086 6.93585 6.99310 7.08444 7.18518 7.21049 7.39323 7.53803 7.67103 7.79373 7.98315 8.15795 8.35599 8.51175 8.60736 8.81991 8.96728 10.00737 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.004219 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.034736 B = 6634.537487 C = 7481.354279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.324 6.324 3 C 0.032 3.968 4 C -0.161 4.161 5 C -0.158 4.158 6 C -0.074 4.074 7 C -0.109 4.109 8 C -0.167 4.167 9 C 0.206 3.794 10 N -0.659 5.659 11 C 0.002 3.998 12 C -0.111 4.111 13 C -0.165 4.165 14 C 0.104 3.896 15 C -0.462 4.462 16 H 0.081 0.919 17 C 0.086 3.914 18 N -0.769 5.769 19 Si 0.897 3.103 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.218 4.218 24 C -0.101 4.101 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.147 0.853 34 H 0.399 0.601 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.283 0.717 38 H 0.094 0.906 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 3.828 2.991 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C -0.016 4.016 4 C -0.181 4.181 5 C -0.179 4.179 6 C -0.075 4.075 7 C -0.166 4.166 8 C -0.190 4.190 9 C 0.102 3.898 10 N -0.278 5.278 11 C -0.091 4.091 12 C -0.131 4.131 13 C -0.185 4.185 14 C 0.101 3.899 15 C -0.490 4.490 16 H 0.099 0.901 17 C -0.136 4.136 18 N -0.392 5.392 19 Si 0.720 3.280 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.238 4.238 24 C -0.121 4.121 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.020 3.699 2.711 12.865 hybrid contribution 0.195 0.106 -0.098 0.243 sum -11.825 3.805 2.613 12.694 Atomic orbital electron populations 1.22887 0.79293 1.03097 1.00769 1.85952 1.20523 1.27027 1.90313 1.18413 0.90322 0.84549 1.08305 1.20806 0.98843 0.91967 1.06460 1.20433 0.93760 0.96363 1.07324 1.19583 0.93238 0.94872 0.99786 1.20723 1.00377 0.93505 1.01994 1.20991 1.01276 0.89405 1.07326 1.17283 0.86688 0.88300 0.97566 1.41488 1.04381 1.05117 1.76830 1.17050 0.80973 1.06780 1.04343 1.20428 0.95457 0.99923 0.97317 1.20772 0.91642 1.02078 1.03994 1.17570 0.93233 0.88928 0.90124 1.19491 0.92128 1.32847 1.04499 0.90119 1.25944 0.99417 0.94045 0.94183 1.69963 1.38816 1.30651 0.99756 0.86487 0.81766 0.79738 0.79968 1.19482 1.19850 1.18105 1.20463 0.93150 1.03243 1.06937 1.20114 0.93796 0.99956 0.98274 0.88917 0.93255 0.93221 0.86262 0.86885 0.91523 0.92118 0.91549 0.83572 0.76635 0.88531 0.86974 0.90572 0.88762 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -4.91 9.76 -19.66 -0.19 -5.10 16 3 C 0.03 0.53 6.71 -39.05 -0.26 0.27 16 4 C -0.16 -2.33 9.04 -39.47 -0.36 -2.69 16 5 C -0.16 -2.28 9.69 -39.54 -0.38 -2.66 16 6 C -0.07 -1.17 5.88 -104.62 -0.62 -1.78 16 7 C -0.11 -1.42 10.01 36.01 0.36 -1.06 16 8 C -0.17 -3.09 7.59 -39.39 -0.30 -3.39 16 9 C 0.21 3.88 6.45 -83.58 -0.54 3.34 16 10 N -0.66 -13.01 5.43 -8.20 -0.04 -13.05 16 11 C 0.00 0.05 5.97 -83.70 -0.50 -0.45 16 12 C -0.11 -2.59 7.24 -39.76 -0.29 -2.88 16 13 C -0.17 -4.19 8.74 -39.27 -0.34 -4.54 16 14 C 0.10 2.72 5.61 -106.79 -0.60 2.12 16 15 C -0.46 -11.96 8.95 -37.90 -0.34 -12.30 16 16 H 0.08 2.01 8.01 -52.49 -0.42 1.59 16 17 C 0.09 2.09 4.84 -17.34 -0.08 2.00 16 18 N -0.77 -19.30 11.46 55.54 0.64 -18.66 16 19 Si 0.90 17.96 29.66 -169.99 -5.04 12.92 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.22 -5.28 9.74 -39.27 -0.38 -5.66 16 24 C -0.10 -2.27 9.90 -39.76 -0.39 -2.66 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 27 H 0.05 0.46 7.67 -51.93 -0.40 0.07 16 28 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 29 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.66 8.08 -51.92 -0.42 0.24 16 32 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.15 2.93 5.13 -52.48 -0.27 2.66 16 34 H 0.40 7.31 8.20 -40.82 -0.33 6.98 16 35 H 0.10 2.16 6.35 -52.49 -0.33 1.82 16 36 H 0.11 2.92 6.23 -52.49 -0.33 2.59 16 37 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 38 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 324.28 15.07 4.89 4.89 Total: -1.00 -27.63 324.28 -8.69 -36.31 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.90 Total: 13.67 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -4.03 Total: -30.98 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.59 Total: -31.71 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.04 Total: 12.92 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.63 -8.69 -36.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173986157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.210 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds